Wall clock time and date at job start Tue Mar 31 2020 06:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29494 * 121.53208 * 2 1 4 4 S 1.69474 * 107.86746 * 180.02562 * 3 2 1 5 5 C 1.72017 * 96.03829 * 359.81679 * 4 3 2 6 6 C 1.37978 * 105.35752 * 0.30314 * 5 4 3 7 7 C 1.47193 * 123.09958 * 179.91787 * 6 5 4 8 8 O 1.21532 * 120.00443 * 179.71129 * 7 6 5 9 9 O 1.34768 * 119.99800 * 359.70499 * 7 6 5 10 10 C 1.45202 * 116.99973 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46991 * 30.00163 * 10 9 7 12 12 C 1.50702 * 109.46955 * 270.00364 * 10 9 7 13 13 H 1.08002 * 120.00299 * 120.00381 * 12 10 9 14 14 C 1.37884 * 119.99942 * 299.71940 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.50700 * 109.47226 * 150.00299 * 10 9 7 21 21 C 1.34508 * 125.79061 * 219.71454 * 20 10 9 22 22 C 1.41382 * 106.84185 * 179.89080 * 21 20 10 23 23 C 1.34509 * 106.84098 * 0.36939 * 22 21 20 24 24 O 1.34302 * 125.78713 * 40.02556 * 20 10 9 25 25 H 1.09004 * 109.46871 * 269.97470 * 1 2 3 26 26 H 1.08997 * 109.47347 * 29.97364 * 1 2 3 27 27 H 1.09002 * 109.47302 * 149.97912 * 1 2 3 28 28 H 1.07999 * 127.31912 * 180.22835 * 5 4 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 30 30 H 1.08000 * 126.57921 * 0.02562 * 21 20 10 31 31 H 1.07998 * 126.57893 * 180.16910 * 22 21 20 32 32 H 1.08002 * 125.79278 * 179.75024 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1842 1.1037 0.0000 4 16 3.8310 0.7034 -0.0007 5 6 3.6027 -1.0016 0.0044 6 6 2.2355 -1.1872 -0.0005 7 6 1.6049 -2.5172 -0.0001 8 8 0.3935 -2.6155 0.0007 9 8 2.3708 -3.6261 -0.0007 10 6 1.6809 -4.9038 -0.0009 11 1 0.7250 -4.8005 -0.5144 12 6 1.4427 -5.3461 1.4199 13 1 0.4351 -5.5078 1.7735 14 6 2.5115 -5.5501 2.2668 15 7 3.7385 -5.3533 1.8363 16 14 2.2166 -6.1059 4.0256 17 1 0.7578 -6.2550 4.2597 18 1 2.8898 -7.4101 4.2521 19 1 2.7680 -5.0949 4.9633 20 6 2.5247 -5.9302 -0.7118 21 6 2.0692 -6.8814 -1.5466 22 6 3.1952 -7.6158 -1.9844 23 6 4.2706 -7.0746 -1.3845 24 8 3.8585 -6.0540 -0.6148 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 4.3671 -1.7645 0.0092 29 1 4.4904 -5.4964 2.4322 30 1 1.0408 -7.0503 -1.8301 31 1 3.1921 -8.4529 -2.6667 32 1 5.2922 -7.4050 -1.5015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344938571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:50 Heat of formation + Delta-G solvation = -37.129345 kcal Electronic energy + Delta-G solvation = -21125.376022 eV Core-core repulsion = 17758.552121 eV Total energy + Delta-G solvation = -3366.823901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.01607 -41.37748 -39.56958 -37.18577 -34.95364 -33.55506 -32.91499 -31.50906 -30.54604 -28.39800 -26.11219 -24.85477 -22.87512 -22.16687 -21.19466 -20.56133 -19.12758 -18.95700 -18.20006 -17.83447 -17.09682 -16.70787 -16.43841 -16.22051 -15.56735 -15.45824 -14.87536 -14.53123 -14.38890 -13.61178 -13.55581 -13.39505 -13.34180 -13.30990 -13.06827 -12.95707 -12.83248 -12.41340 -12.21275 -11.87017 -11.80104 -11.18447 -10.92355 -10.83056 -10.77850 -10.47116 -9.75116 -9.07489 -8.22772 -6.51523 -0.66548 0.26404 0.65467 0.65732 1.18371 1.36473 1.38938 1.49209 1.89600 2.06272 2.21810 2.33553 2.62265 3.08252 3.46476 3.92512 3.96333 4.31953 4.35342 4.41995 4.46497 4.52085 4.62356 4.70690 4.71757 5.14961 5.17989 5.23854 5.45135 5.51822 5.60295 5.79985 5.90463 5.96701 6.52293 6.73177 7.08021 7.25960 8.74995 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.005851 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.857215 B = 4784.144132 C = 5378.071373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.163 3.837 3 N -0.496 5.496 4 S 0.352 5.648 5 C -0.132 4.132 6 C -0.228 4.228 7 C 0.523 3.477 8 O -0.536 6.536 9 O -0.340 6.340 10 C 0.279 3.721 11 H 0.064 0.936 12 C -0.573 4.573 13 H 0.062 0.938 14 C 0.043 3.957 15 N -0.840 5.840 16 Si 0.952 3.048 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.275 1.275 20 C 0.040 3.960 21 C -0.265 4.265 22 C -0.220 4.220 23 C -0.083 4.083 24 O -0.140 6.140 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.205 0.795 29 H 0.269 0.731 30 H 0.146 0.854 31 H 0.169 0.831 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 5.906 -4.890 8.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.013 4.013 3 N -0.317 5.317 4 S 0.507 5.493 5 C -0.281 4.281 6 C -0.247 4.247 7 C 0.367 3.633 8 O -0.430 6.430 9 O -0.255 6.255 10 C 0.227 3.773 11 H 0.082 0.918 12 C -0.609 4.609 13 H 0.080 0.920 14 C -0.165 4.165 15 N -0.473 5.473 16 Si 0.776 3.224 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.013 4.013 21 C -0.284 4.284 22 C -0.239 4.239 23 C -0.151 4.151 24 O -0.032 6.032 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.222 0.778 29 H 0.078 0.922 30 H 0.164 0.836 31 H 0.186 0.814 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.155 8.089 -4.688 10.231 hybrid contribution -1.109 -2.513 0.940 2.903 sum 3.046 5.575 -3.748 7.376 Atomic orbital electron populations 1.20905 0.84751 1.05161 1.04583 1.21462 1.00226 0.86207 0.93442 1.76312 1.01906 1.25835 1.27675 1.83592 1.08626 0.93472 1.63622 1.27880 0.99251 1.05750 0.95219 1.19816 0.93529 0.92939 1.18402 1.20383 0.85190 0.85339 0.72387 1.90638 1.15751 1.87878 1.48713 1.86761 1.41988 1.15357 1.81430 1.18671 0.87871 0.75618 0.95144 0.91841 1.21437 0.93820 1.49743 0.95929 0.92026 1.25747 0.94868 0.93599 1.02330 1.70132 0.98259 1.42595 1.36337 0.85604 0.78655 0.78278 0.79825 1.19469 1.19873 1.20007 1.22683 0.81716 1.00145 0.96780 1.21586 1.00966 1.01034 1.04832 1.21895 0.91488 1.04346 1.06135 1.24725 1.01425 0.92378 0.96571 1.84402 1.22484 1.43344 1.53012 0.89461 0.88744 0.88738 0.77824 0.92201 0.83626 0.81399 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.74 9.51 71.24 0.68 -2.07 16 2 C 0.16 5.38 6.75 43.16 0.29 5.67 16 3 N -0.50 -14.97 11.97 -51.05 -0.61 -15.58 16 4 S 0.35 8.71 23.69 -56.49 -1.34 7.37 16 5 C -0.13 -4.08 11.06 67.76 0.75 -3.33 16 6 C -0.23 -8.40 5.86 -20.73 -0.12 -8.52 16 7 C 0.52 23.61 7.87 70.17 0.55 24.16 16 8 O -0.54 -25.26 13.01 19.73 0.26 -25.00 16 9 O -0.34 -16.96 8.95 -54.84 -0.49 -17.45 16 10 C 0.28 14.42 2.59 29.10 0.08 14.49 16 11 H 0.06 3.26 7.15 -2.39 -0.02 3.24 16 12 C -0.57 -31.48 8.91 25.60 0.23 -31.25 16 13 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 14 C 0.04 2.30 5.24 84.66 0.44 2.74 16 15 N -0.84 -44.76 10.44 21.45 0.22 -44.54 16 16 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C 0.04 1.93 5.67 24.83 0.14 2.07 16 21 C -0.26 -11.22 10.80 22.19 0.24 -10.98 16 22 C -0.22 -7.90 10.91 22.19 0.24 -7.65 16 23 C -0.08 -3.08 12.09 66.97 0.81 -2.27 16 24 O -0.14 -6.66 8.61 -1.36 -0.01 -6.67 16 25 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.09 3.14 5.63 -2.39 -0.01 3.13 16 28 H 0.20 6.07 8.06 -2.91 -0.02 6.04 16 29 H 0.27 13.50 8.31 -92.70 -0.77 12.73 16 30 H 0.15 5.59 8.06 -2.91 -0.02 5.56 16 31 H 0.17 4.64 8.06 -2.91 -0.02 4.62 16 32 H 0.22 6.08 8.06 -2.91 -0.02 6.05 16 Total: -1.00 -64.10 302.22 5.55 -58.55 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.16 Total: 16.12 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.33 Total: -16.94 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.39 Total: -60.12 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -0.25 Total: -49.12 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 8.71 SS G_CDS: -1.34 Total: 7.37 kcal Total: -64.10 5.55 -58.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344938571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.418 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds