Wall clock time and date at job start Tue Mar 31 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29394 * 124.70302 * 2 1 4 4 C 1.30923 * 117.46728 * 180.02562 * 3 2 1 5 5 C 1.36761 * 113.92909 * 0.02562 * 4 3 2 6 6 C 1.46497 * 126.17488 * 179.97438 * 5 4 3 7 7 O 1.21614 * 120.00173 * 359.97438 * 6 5 4 8 8 O 1.34883 * 119.99846 * 179.97438 * 6 5 4 9 9 C 1.45200 * 116.99893 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47059 * 30.00468 * 9 8 6 11 11 C 1.50700 * 109.46963 * 149.99828 * 9 8 6 12 12 H 1.07998 * 119.99852 * 0.02562 * 11 9 8 13 13 C 1.37879 * 120.00119 * 179.97438 * 11 9 8 14 14 N 1.31511 * 119.99570 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00023 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47139 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46779 * 120.00569 * 15 13 11 18 18 H 1.48502 * 109.47111 * 240.00413 * 15 13 11 19 19 C 1.50696 * 109.47394 * 270.00134 * 9 8 6 20 20 C 1.34512 * 125.79261 * 144.99949 * 19 9 8 21 21 C 1.41379 * 106.84086 * 180.02562 * 20 19 9 22 22 C 1.34512 * 106.84332 * 0.02562 * 21 20 19 23 23 O 1.34301 * 108.41872 * 359.97438 * 22 21 20 24 24 S 1.70923 * 124.70835 * 180.32882 * 2 1 3 25 25 H 1.09008 * 109.47269 * 89.97572 * 1 2 3 26 26 H 1.08998 * 109.47430 * 209.97284 * 1 2 3 27 27 H 1.09001 * 109.47832 * 329.97479 * 1 2 3 28 28 H 1.07996 * 123.03174 * 180.02562 * 4 3 2 29 29 H 0.97003 * 119.99617 * 179.97438 * 14 13 11 30 30 H 1.07996 * 126.57559 * 359.97438 * 20 19 9 31 31 H 1.08007 * 126.57622 * 179.97438 * 21 20 19 32 32 H 1.08004 * 125.79431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2436 1.0638 0.0000 4 6 3.5424 0.8989 -0.0005 5 6 3.9352 -0.4111 -0.0016 6 6 5.3163 -0.8997 -0.0029 7 8 6.2408 -0.1096 -0.0036 8 8 5.5625 -2.2259 -0.0033 9 6 6.9548 -2.6378 -0.0051 10 1 7.5564 -1.8875 0.5080 11 6 7.0883 -3.9602 0.7050 12 1 6.2141 -4.4430 1.1162 13 6 8.3264 -4.5544 0.8289 14 7 9.3908 -3.9667 0.3277 15 14 8.4917 -6.1940 1.7086 16 1 7.1554 -6.6416 2.1766 17 1 9.0520 -7.2028 0.7740 18 1 9.3992 -6.0411 2.8741 19 6 7.4347 -2.7802 -1.4265 20 6 8.6712 -2.4935 -1.8719 21 6 8.6819 -2.7713 -3.2581 22 6 7.4512 -3.2105 -3.5771 23 8 6.7001 -3.2140 -2.4638 24 16 2.4801 -1.4051 -0.0081 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3635 0.8897 0.5142 28 1 4.2404 1.7229 -0.0002 29 1 10.2618 -4.3845 0.4152 30 1 9.4969 -2.1217 -1.2836 31 1 9.5177 -2.6526 -3.9318 32 1 7.1229 -3.5103 -4.5614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350312700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:38 Heat of formation + Delta-G solvation = -23.300487 kcal Electronic energy + Delta-G solvation = -20598.926069 eV Core-core repulsion = 17232.701832 eV Total energy + Delta-G solvation = -3366.224237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37703 -39.99718 -39.09651 -35.80589 -33.37207 -32.35037 -31.71555 -29.88774 -28.72295 -26.69477 -24.64706 -23.31599 -21.89216 -20.57466 -19.62585 -19.13075 -18.39664 -17.09905 -16.71115 -16.31912 -15.66947 -15.40502 -14.99302 -14.71844 -14.57070 -14.32968 -13.66783 -13.24204 -12.92608 -12.70153 -12.52864 -12.08746 -11.84514 -11.62176 -11.51172 -11.35340 -11.15704 -11.00542 -10.42236 -10.24363 -10.09505 -9.72181 -9.50594 -9.45973 -8.89008 -8.86180 -8.67335 -7.28126 -6.25732 -4.45296 0.21057 1.19188 1.66538 2.45083 2.83299 3.17415 3.22100 3.27144 3.28645 3.38789 3.91518 4.01764 4.15424 4.24122 4.83716 5.01857 5.18237 5.19031 5.23008 5.51867 5.63147 5.81727 6.04565 6.06956 6.33735 6.60114 6.95510 7.09320 7.20675 7.28723 7.55983 7.63373 7.68446 7.77250 8.25010 8.40845 8.69523 9.21833 10.71766 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.004990 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.976876 B = 5609.775407 C = 6343.134894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.032 3.968 3 N -0.483 5.483 4 C 0.119 3.881 5 C -0.273 4.273 6 C 0.535 3.465 7 O -0.499 6.499 8 O -0.342 6.342 9 C 0.301 3.699 10 H 0.081 0.919 11 C -0.530 4.530 12 H 0.079 0.921 13 C 0.070 3.930 14 N -0.867 5.867 15 Si 0.915 3.085 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.017 3.983 20 C -0.172 4.172 21 C -0.218 4.218 22 C -0.088 4.088 23 O -0.179 6.179 24 S 0.227 5.773 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.190 0.810 29 H 0.269 0.731 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 4.364 -2.384 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.241 4.241 3 N -0.198 5.198 4 C -0.040 4.040 5 C -0.396 4.396 6 C 0.377 3.623 7 O -0.389 6.389 8 O -0.258 6.258 9 C 0.248 3.752 10 H 0.098 0.902 11 C -0.567 4.567 12 H 0.097 0.903 13 C -0.136 4.136 14 N -0.501 5.501 15 Si 0.741 3.259 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.205 1.205 19 C -0.034 4.034 20 C -0.192 4.192 21 C -0.238 4.238 22 C -0.156 4.156 23 O -0.076 6.076 24 S 0.484 5.516 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.207 0.793 29 H 0.079 0.921 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.223 3.831 -2.386 13.972 hybrid contribution 1.494 -0.191 0.088 1.509 sum -11.729 3.639 -2.298 12.494 Atomic orbital electron populations 1.20490 0.84895 1.04442 1.04095 1.27583 1.02422 0.92393 1.01696 1.66205 1.04621 1.31476 1.17472 1.22475 0.90749 0.94986 0.95772 1.25262 0.96732 0.97462 1.20121 1.19369 0.86628 0.82865 0.73460 1.90856 1.44764 1.57105 1.46195 1.86652 1.35314 1.21675 1.82201 1.19272 0.73272 0.97540 0.85102 0.90186 1.20918 0.94948 1.04296 1.36584 0.90284 1.24937 0.95043 0.98553 0.95043 1.70036 0.99165 1.38675 1.42233 0.86159 0.78573 0.82063 0.79076 1.19246 1.20625 1.20481 1.23532 0.92000 0.99117 0.88719 1.21294 0.97926 1.07117 0.92841 1.21722 0.97663 1.07586 0.96826 1.23610 0.92002 1.09528 0.90425 1.83983 1.40667 1.66802 1.16111 1.84242 0.94972 1.09116 1.63241 0.89299 0.89790 0.89121 0.79347 0.92114 0.83579 0.85096 0.79872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.46 36.00 0.38 -0.20 16 2 C 0.03 0.38 7.37 -13.31 -0.10 0.29 16 3 N -0.48 -6.82 10.50 -11.26 -0.12 -6.93 16 4 C 0.12 1.82 11.16 -18.47 -0.21 1.61 16 5 C -0.27 -4.72 6.52 -36.79 -0.24 -4.96 16 6 C 0.53 11.54 7.90 34.06 0.27 11.81 16 7 O -0.50 -11.74 16.14 -19.35 -0.31 -12.05 16 8 O -0.34 -8.16 9.73 -43.81 -0.43 -8.58 16 9 C 0.30 7.94 2.42 -29.04 -0.07 7.87 16 10 H 0.08 2.24 7.16 -51.93 -0.37 1.87 16 11 C -0.53 -14.45 8.89 -34.44 -0.31 -14.76 16 12 H 0.08 2.12 7.81 -52.49 -0.41 1.71 16 13 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 14 N -0.87 -23.55 10.48 55.43 0.58 -22.97 16 15 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.02 0.45 5.67 -35.63 -0.20 0.24 16 20 C -0.17 -4.29 9.04 -39.70 -0.36 -4.65 16 21 C -0.22 -4.68 10.91 -39.70 -0.43 -5.11 16 22 C -0.09 -1.82 12.09 29.41 0.36 -1.46 16 23 O -0.18 -4.39 10.63 2.02 0.02 -4.37 16 24 S 0.23 3.09 23.04 -107.50 -2.48 0.61 16 25 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.19 2.63 8.06 -52.49 -0.42 2.21 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.15 3.73 7.49 -52.49 -0.39 3.34 16 31 H 0.13 2.37 8.06 -52.48 -0.42 1.94 16 32 H 0.18 2.85 8.06 -52.48 -0.42 2.43 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -31.46 308.48 -6.96 -38.42 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -2.85 Total: 3.18 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.01 Total: -7.54 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.46 Total: -29.90 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.72 Total: -25.00 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.48 Total: 0.61 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.46 -6.96 -38.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.121 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds