Wall clock time and date at job start Tue Mar 31 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29394 * 124.70302 * 2 1 4 4 C 1.30923 * 117.46728 * 180.02562 * 3 2 1 5 5 C 1.36761 * 113.92909 * 0.02562 * 4 3 2 6 6 C 1.46497 * 126.17488 * 179.97438 * 5 4 3 7 7 O 1.21614 * 120.00173 * 359.97438 * 6 5 4 8 8 O 1.34883 * 119.99846 * 179.97438 * 6 5 4 9 9 C 1.45200 * 116.99893 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47059 * 30.00468 * 9 8 6 11 11 C 1.50700 * 109.46963 * 149.99828 * 9 8 6 12 12 H 1.07998 * 119.99852 * 0.02562 * 11 9 8 13 13 C 1.37879 * 120.00119 * 179.97438 * 11 9 8 14 14 N 1.31511 * 119.99570 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00023 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47139 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46779 * 120.00569 * 15 13 11 18 18 H 1.48502 * 109.47111 * 240.00413 * 15 13 11 19 19 C 1.50696 * 109.47394 * 270.00134 * 9 8 6 20 20 C 1.34512 * 125.79261 * 144.99949 * 19 9 8 21 21 C 1.41379 * 106.84086 * 180.02562 * 20 19 9 22 22 C 1.34512 * 106.84332 * 0.02562 * 21 20 19 23 23 O 1.34301 * 108.41872 * 359.97438 * 22 21 20 24 24 S 1.70923 * 124.70835 * 180.32882 * 2 1 3 25 25 H 1.09008 * 109.47269 * 89.97572 * 1 2 3 26 26 H 1.08998 * 109.47430 * 209.97284 * 1 2 3 27 27 H 1.09001 * 109.47832 * 329.97479 * 1 2 3 28 28 H 1.07996 * 123.03174 * 180.02562 * 4 3 2 29 29 H 0.97003 * 119.99617 * 179.97438 * 14 13 11 30 30 H 1.07996 * 126.57559 * 359.97438 * 20 19 9 31 31 H 1.08007 * 126.57622 * 179.97438 * 21 20 19 32 32 H 1.08004 * 125.79431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2436 1.0638 0.0000 4 6 3.5424 0.8989 -0.0005 5 6 3.9352 -0.4111 -0.0016 6 6 5.3163 -0.8997 -0.0029 7 8 6.2408 -0.1096 -0.0036 8 8 5.5625 -2.2259 -0.0033 9 6 6.9548 -2.6378 -0.0051 10 1 7.5564 -1.8875 0.5080 11 6 7.0883 -3.9602 0.7050 12 1 6.2141 -4.4430 1.1162 13 6 8.3264 -4.5544 0.8289 14 7 9.3908 -3.9667 0.3277 15 14 8.4917 -6.1940 1.7086 16 1 7.1554 -6.6416 2.1766 17 1 9.0520 -7.2028 0.7740 18 1 9.3992 -6.0411 2.8741 19 6 7.4347 -2.7802 -1.4265 20 6 8.6712 -2.4935 -1.8719 21 6 8.6819 -2.7713 -3.2581 22 6 7.4512 -3.2105 -3.5771 23 8 6.7001 -3.2140 -2.4638 24 16 2.4801 -1.4051 -0.0081 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3635 0.8897 0.5142 28 1 4.2404 1.7229 -0.0002 29 1 10.2618 -4.3845 0.4152 30 1 9.4969 -2.1217 -1.2836 31 1 9.5177 -2.6526 -3.9318 32 1 7.1229 -3.5103 -4.5614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350312700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:38 Heat of formation + Delta-G solvation = -42.641701 kcal Electronic energy + Delta-G solvation = -20599.764767 eV Core-core repulsion = 17232.701832 eV Total energy + Delta-G solvation = -3367.062935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.20321 -41.46214 -40.52527 -37.61396 -35.35838 -33.54871 -33.36582 -31.68676 -29.93545 -28.58359 -25.93625 -24.94843 -23.44549 -22.37288 -21.37942 -20.59062 -19.71534 -18.93952 -18.43388 -17.85876 -17.39683 -16.97475 -16.79176 -16.37251 -15.90020 -15.64937 -14.96519 -14.73709 -14.49571 -14.00632 -13.59644 -13.52549 -13.41282 -13.27617 -13.16183 -13.04006 -12.84655 -12.67794 -12.25300 -12.11993 -11.80857 -11.42864 -10.86458 -10.84432 -10.65628 -10.52645 -9.99142 -9.13719 -8.25631 -6.55969 -0.98297 0.06662 0.53459 1.06769 1.13964 1.38805 1.40503 1.52675 1.71704 1.82001 2.07317 2.36080 2.39453 2.98716 3.04378 3.70946 3.91225 4.08207 4.21348 4.38916 4.54844 4.59947 4.61953 4.70026 4.89203 5.12840 5.17211 5.25660 5.37013 5.44149 5.61053 5.74295 5.90168 6.42881 6.45216 6.48034 6.74922 7.15441 8.70542 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.004990 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.976876 B = 5609.775407 C = 6343.134894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.065 3.935 3 N -0.501 5.501 4 C 0.141 3.859 5 C -0.325 4.325 6 C 0.532 3.468 7 O -0.534 6.534 8 O -0.350 6.350 9 C 0.304 3.696 10 H 0.045 0.955 11 C -0.556 4.556 12 H 0.075 0.925 13 C 0.026 3.974 14 N -0.889 5.889 15 Si 0.982 3.018 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.270 1.270 19 C -0.013 4.013 20 C -0.186 4.186 21 C -0.228 4.228 22 C -0.070 4.070 23 O -0.196 6.196 24 S 0.243 5.757 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.194 0.806 29 H 0.272 0.728 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.204 3.524 -3.439 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.207 4.207 3 N -0.216 5.216 4 C -0.019 4.019 5 C -0.447 4.447 6 C 0.377 3.623 7 O -0.427 6.427 8 O -0.266 6.266 9 C 0.250 3.750 10 H 0.063 0.937 11 C -0.593 4.593 12 H 0.093 0.907 13 C -0.177 4.177 14 N -0.524 5.524 15 Si 0.805 3.195 16 H -0.185 1.185 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.064 4.064 20 C -0.206 4.206 21 C -0.247 4.247 22 C -0.136 4.136 23 O -0.094 6.094 24 S 0.501 5.499 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.211 0.789 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.184 0.816 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -15.547 2.991 -3.442 16.202 hybrid contribution 2.053 0.183 0.346 2.090 sum -13.493 3.174 -3.096 14.203 Atomic orbital electron populations 1.20855 0.80984 1.06378 1.06114 1.28533 1.04255 0.90996 0.96959 1.66363 1.03858 1.32049 1.19362 1.22668 0.91619 0.94452 0.93170 1.24955 0.95717 0.99049 1.24979 1.19982 0.88329 0.81721 0.72236 1.90811 1.46449 1.57327 1.48078 1.86621 1.33889 1.23362 1.82739 1.18867 0.74024 0.96314 0.85754 0.93748 1.21153 0.95413 1.04951 1.37765 0.90666 1.25818 0.94440 1.01980 0.95480 1.70165 0.99511 1.39964 1.42727 0.85140 0.78822 0.77482 0.78046 1.18542 1.20180 1.19540 1.23331 0.92626 1.01335 0.89064 1.21365 0.97115 1.07269 0.94854 1.22073 0.99453 1.07745 0.95461 1.24694 0.91252 1.06656 0.91028 1.83955 1.41421 1.67142 1.16869 1.84120 0.93192 1.09238 1.63335 0.86893 0.87198 0.87759 0.78890 0.91897 0.85452 0.81613 0.74356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.46 71.23 0.74 -0.11 16 2 C 0.07 1.38 7.37 88.46 0.65 2.03 16 3 N -0.50 -13.29 10.50 -189.54 -1.99 -15.28 16 4 C 0.14 4.33 11.16 84.48 0.94 5.28 16 5 C -0.32 -11.50 6.52 24.08 0.16 -11.34 16 6 C 0.53 24.41 7.90 69.97 0.55 24.97 16 7 O -0.53 -27.07 16.14 19.46 0.31 -26.75 16 8 O -0.35 -17.67 9.73 -55.28 -0.54 -18.21 16 9 C 0.30 17.04 2.42 29.10 0.07 17.11 16 10 H 0.04 2.74 7.16 -2.39 -0.02 2.72 16 11 C -0.56 -31.59 8.89 25.60 0.23 -31.37 16 12 H 0.08 4.18 7.81 -2.91 -0.02 4.16 16 13 C 0.03 1.43 5.30 84.66 0.45 1.88 16 14 N -0.89 -49.92 10.48 21.45 0.22 -49.70 16 15 Si 0.98 42.64 29.54 68.60 2.03 44.66 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 19 C -0.01 -0.71 5.67 24.83 0.14 -0.57 16 20 C -0.19 -9.58 9.04 22.19 0.20 -9.38 16 21 C -0.23 -9.52 10.91 22.19 0.24 -9.28 16 22 C -0.07 -2.74 12.09 66.97 0.81 -1.93 16 23 O -0.20 -9.68 10.63 1.06 0.01 -9.66 16 24 S 0.24 6.37 23.04 -56.49 -1.30 5.06 16 25 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.19 5.52 8.06 -2.91 -0.02 5.50 16 29 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.13 6.91 7.49 -2.91 -0.02 6.89 16 31 H 0.17 5.58 8.06 -2.91 -0.02 5.56 16 32 H 0.24 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -72.56 308.48 5.10 -67.46 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.16 Total: 15.13 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.19 Total: -12.72 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -1.77 Total: -64.98 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -0.21 Total: -54.62 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 6.37 SS G_CDS: -1.30 Total: 5.06 kcal Total: -72.56 5.10 -67.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.821 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds