Wall clock time and date at job start Tue Mar 31 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29390 * 124.70367 * 2 1 4 4 C 1.30920 * 117.46345 * 179.97438 * 3 2 1 5 5 C 1.36749 * 113.93313 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.18054 * 179.97438 * 5 4 3 7 7 O 1.21615 * 119.99878 * 0.02562 * 6 5 4 8 8 O 1.34876 * 120.00655 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00554 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.47058 * 29.99713 * 9 8 6 11 11 C 1.50699 * 109.47296 * 269.99999 * 9 8 6 12 12 H 1.07993 * 120.00083 * 125.08343 * 11 9 8 13 13 C 1.37881 * 119.99692 * 305.08835 * 11 9 8 14 14 N 1.31509 * 119.99841 * 7.27723 * 13 11 9 15 15 Si 1.86795 * 119.99657 * 187.27770 * 13 11 9 16 16 H 1.48499 * 109.47267 * 84.99064 * 15 13 11 17 17 H 1.48509 * 109.47005 * 204.99177 * 15 13 11 18 18 H 1.48502 * 109.47288 * 324.98850 * 15 13 11 19 19 C 1.50699 * 109.47418 * 149.99715 * 9 8 6 20 20 C 1.34512 * 125.79090 * 213.45232 * 19 9 8 21 21 C 1.41391 * 106.84098 * 180.02562 * 20 19 9 22 22 C 1.34513 * 106.83759 * 359.97438 * 21 20 19 23 23 O 1.34299 * 108.42234 * 359.73903 * 22 21 20 24 24 S 1.70924 * 124.70747 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47054 * 270.04201 * 1 2 3 26 26 H 1.09007 * 109.47274 * 30.04382 * 1 2 3 27 27 H 1.09004 * 109.46810 * 150.04151 * 1 2 3 28 28 H 1.08004 * 123.03253 * 180.26784 * 4 3 2 29 29 H 0.97006 * 119.99821 * 179.97438 * 14 13 11 30 30 H 1.08002 * 126.58135 * 0.02909 * 20 19 9 31 31 H 1.07998 * 126.57833 * 179.97438 * 21 20 19 32 32 H 1.08000 * 125.78961 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0637 0.0000 4 6 3.5424 0.8987 0.0005 5 6 3.9352 -0.4111 0.0016 6 6 5.3163 -0.8999 0.0018 7 8 6.2409 -0.1098 0.0015 8 8 5.5625 -2.2260 0.0023 9 6 6.9548 -2.6380 0.0031 10 1 7.5555 -1.8875 0.5170 11 6 7.4372 -2.7810 -1.4174 12 1 8.3131 -2.2422 -1.7470 13 6 6.7601 -3.5998 -2.2962 14 7 5.6162 -4.1427 -1.9407 15 14 7.4677 -3.9380 -3.9915 16 1 8.4334 -5.0631 -3.9095 17 1 6.3688 -4.2958 -4.9242 18 1 8.1633 -2.7238 -4.4888 19 6 7.0870 -3.9602 0.7141 20 6 8.1388 -4.3534 1.4547 21 6 7.8429 -5.6519 1.9296 22 6 6.6277 -5.9741 1.4512 23 8 6.1721 -4.9433 0.7207 24 16 2.4802 -1.4051 0.0006 25 1 -0.3633 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 4.2406 1.7228 0.0048 29 1 5.1397 -4.7184 -2.5591 30 1 9.0370 -3.7861 1.6493 31 1 8.4718 -6.2668 2.5561 32 1 6.1048 -6.9023 1.6286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350312701.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:40 Heat of formation + Delta-G solvation = -20.811250 kcal Electronic energy + Delta-G solvation = -20792.222376 eV Core-core repulsion = 17426.106081 eV Total energy + Delta-G solvation = -3366.116295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44600 -39.70962 -38.75560 -35.46052 -32.97021 -32.12494 -31.95396 -30.05823 -28.57448 -26.56904 -24.45641 -23.31213 -21.71940 -20.68578 -19.55596 -18.92025 -18.19929 -16.99202 -16.58548 -16.13754 -15.49395 -15.10621 -14.93957 -14.60242 -14.36691 -14.18058 -13.56638 -13.25982 -12.79792 -12.52747 -12.36720 -11.99268 -11.87366 -11.74245 -11.45623 -11.22123 -11.10764 -11.02057 -10.42153 -9.92315 -9.83106 -9.50635 -9.25204 -9.17448 -8.94076 -8.75333 -8.63369 -7.44819 -6.27332 -4.47951 0.47103 1.45622 1.94197 2.70353 2.78637 3.18005 3.24806 3.28436 3.47187 3.61551 3.77810 4.12798 4.22907 4.23080 5.03268 5.04946 5.34039 5.38876 5.43223 5.59939 5.76435 5.81994 5.88589 6.24526 6.31744 6.39938 6.71014 6.79856 7.09609 7.37082 7.54750 7.62412 7.74400 7.79213 8.27100 8.50527 8.83781 9.25225 10.72223 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.005776 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.445114 B = 4846.322469 C = 5475.603595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.017 3.983 3 N -0.484 5.484 4 C 0.106 3.894 5 C -0.264 4.264 6 C 0.537 3.463 7 O -0.515 6.515 8 O -0.319 6.319 9 C 0.281 3.719 10 H 0.074 0.926 11 C -0.551 4.551 12 H 0.076 0.924 13 C 0.082 3.918 14 N -0.823 5.823 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.075 3.925 20 C -0.259 4.259 21 C -0.217 4.217 22 C -0.081 4.081 23 O -0.130 6.130 24 S 0.241 5.759 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.187 0.813 29 H 0.267 0.733 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 1.299 4.921 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.256 4.256 3 N -0.199 5.199 4 C -0.052 4.052 5 C -0.387 4.387 6 C 0.380 3.620 7 O -0.408 6.408 8 O -0.234 6.234 9 C 0.229 3.771 10 H 0.091 0.909 11 C -0.587 4.587 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.455 5.455 15 Si 0.722 3.278 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.194 1.194 19 C 0.022 3.978 20 C -0.279 4.279 21 C -0.237 4.237 22 C -0.149 4.149 23 O -0.023 6.023 24 S 0.498 5.502 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.204 0.796 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.998 0.738 4.726 10.191 hybrid contribution 1.465 0.244 -0.931 1.753 sum -7.533 0.981 3.795 8.492 Atomic orbital electron populations 1.20442 0.85216 1.04215 1.03801 1.27547 1.02343 0.92923 1.02775 1.66167 1.04687 1.31683 1.17405 1.22400 0.90686 0.95038 0.97078 1.25435 0.97321 0.97249 1.18686 1.19228 0.86179 0.83142 0.73436 1.90781 1.44798 1.57513 1.47723 1.86854 1.35012 1.20662 1.80831 1.18860 0.77368 0.85134 0.95778 0.90873 1.21236 1.14262 1.29583 0.93629 0.90552 1.25146 0.94274 0.94381 0.99145 1.70094 1.12071 1.27545 1.35759 0.86534 0.79073 0.79156 0.83031 1.20011 1.20804 1.19411 1.22956 0.88513 0.91010 0.95281 1.21183 1.01536 0.98168 1.06974 1.21530 0.97996 0.97634 1.06523 1.23795 0.97218 0.94013 0.99921 1.84338 1.41292 1.21694 1.54977 1.84384 0.94816 1.08404 1.62564 0.89572 0.89394 0.89974 0.79649 0.92297 0.84689 0.84935 0.79809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.46 36.01 0.38 -0.32 16 2 C 0.02 0.24 7.37 -13.31 -0.10 0.14 16 3 N -0.48 -7.74 10.50 -11.26 -0.12 -7.86 16 4 C 0.11 1.83 11.16 -18.48 -0.21 1.63 16 5 C -0.26 -5.12 6.52 -36.79 -0.24 -5.36 16 6 C 0.54 12.50 7.90 34.06 0.27 12.77 16 7 O -0.52 -12.69 16.14 -19.35 -0.31 -13.00 16 8 O -0.32 -8.04 8.66 -44.03 -0.38 -8.42 16 9 C 0.28 7.18 2.59 -29.04 -0.08 7.11 16 10 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 11 C -0.55 -14.97 8.87 -34.44 -0.31 -15.27 16 12 H 0.08 2.06 7.82 -52.49 -0.41 1.65 16 13 C 0.08 2.18 5.23 -17.82 -0.09 2.09 16 14 N -0.82 -22.18 11.21 55.43 0.62 -21.56 16 15 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.08 1.83 5.74 -35.63 -0.20 1.63 16 20 C -0.26 -5.58 10.81 -39.70 -0.43 -6.01 16 21 C -0.22 -4.14 10.91 -39.70 -0.43 -4.57 16 22 C -0.08 -1.58 12.09 29.42 0.36 -1.22 16 23 O -0.13 -3.13 9.66 1.08 0.01 -3.12 16 24 S 0.24 3.88 23.04 -107.50 -2.48 1.41 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.19 2.91 8.06 -52.48 -0.42 2.49 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.14 2.63 8.06 -52.49 -0.42 2.20 16 31 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 32 H 0.18 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -31.34 309.66 -6.97 -38.31 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -2.88 Total: 1.34 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.08 Total: -7.39 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 0.50 Total: -29.42 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.68 Total: -24.55 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.48 Total: 1.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.34 -6.97 -38.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312701.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.500 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds