Wall clock time and date at job start Tue Mar 31 2020 06:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29390 * 124.70367 * 2 1 4 4 C 1.30920 * 117.46345 * 179.97438 * 3 2 1 5 5 C 1.36749 * 113.93313 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.18054 * 179.97438 * 5 4 3 7 7 O 1.21615 * 119.99878 * 0.02562 * 6 5 4 8 8 O 1.34876 * 120.00655 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00554 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.47058 * 29.99713 * 9 8 6 11 11 C 1.50699 * 109.47296 * 269.99999 * 9 8 6 12 12 H 1.07993 * 120.00083 * 125.08343 * 11 9 8 13 13 C 1.37881 * 119.99692 * 305.08835 * 11 9 8 14 14 N 1.31509 * 119.99841 * 7.27723 * 13 11 9 15 15 Si 1.86795 * 119.99657 * 187.27770 * 13 11 9 16 16 H 1.48499 * 109.47267 * 84.99064 * 15 13 11 17 17 H 1.48509 * 109.47005 * 204.99177 * 15 13 11 18 18 H 1.48502 * 109.47288 * 324.98850 * 15 13 11 19 19 C 1.50699 * 109.47418 * 149.99715 * 9 8 6 20 20 C 1.34512 * 125.79090 * 213.45232 * 19 9 8 21 21 C 1.41391 * 106.84098 * 180.02562 * 20 19 9 22 22 C 1.34513 * 106.83759 * 359.97438 * 21 20 19 23 23 O 1.34299 * 108.42234 * 359.73903 * 22 21 20 24 24 S 1.70924 * 124.70747 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47054 * 270.04201 * 1 2 3 26 26 H 1.09007 * 109.47274 * 30.04382 * 1 2 3 27 27 H 1.09004 * 109.46810 * 150.04151 * 1 2 3 28 28 H 1.08004 * 123.03253 * 180.26784 * 4 3 2 29 29 H 0.97006 * 119.99821 * 179.97438 * 14 13 11 30 30 H 1.08002 * 126.58135 * 0.02909 * 20 19 9 31 31 H 1.07998 * 126.57833 * 179.97438 * 21 20 19 32 32 H 1.08000 * 125.78961 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0637 0.0000 4 6 3.5424 0.8987 0.0005 5 6 3.9352 -0.4111 0.0016 6 6 5.3163 -0.8999 0.0018 7 8 6.2409 -0.1098 0.0015 8 8 5.5625 -2.2260 0.0023 9 6 6.9548 -2.6380 0.0031 10 1 7.5555 -1.8875 0.5170 11 6 7.4372 -2.7810 -1.4174 12 1 8.3131 -2.2422 -1.7470 13 6 6.7601 -3.5998 -2.2962 14 7 5.6162 -4.1427 -1.9407 15 14 7.4677 -3.9380 -3.9915 16 1 8.4334 -5.0631 -3.9095 17 1 6.3688 -4.2958 -4.9242 18 1 8.1633 -2.7238 -4.4888 19 6 7.0870 -3.9602 0.7141 20 6 8.1388 -4.3534 1.4547 21 6 7.8429 -5.6519 1.9296 22 6 6.6277 -5.9741 1.4512 23 8 6.1721 -4.9433 0.7207 24 16 2.4802 -1.4051 0.0006 25 1 -0.3633 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 4.2406 1.7228 0.0048 29 1 5.1397 -4.7184 -2.5591 30 1 9.0370 -3.7861 1.6493 31 1 8.4718 -6.2668 2.5561 32 1 6.1048 -6.9023 1.6286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350312701.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:40 Heat of formation + Delta-G solvation = -39.631674 kcal Electronic energy + Delta-G solvation = -20793.038491 eV Core-core repulsion = 17426.106081 eV Total energy + Delta-G solvation = -3366.932410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.12040 -41.23422 -40.35481 -37.32378 -34.93136 -33.64133 -33.27510 -31.80033 -29.85696 -28.38460 -25.88130 -24.95373 -23.31048 -22.30919 -21.26146 -20.41457 -19.66226 -18.80399 -18.28527 -17.73786 -17.15286 -16.92967 -16.51922 -16.35281 -15.78176 -15.62195 -15.02276 -14.61456 -14.46523 -13.69380 -13.63578 -13.43235 -13.42593 -13.19457 -13.11700 -12.98645 -12.85376 -12.59473 -12.25877 -11.90493 -11.61349 -11.13568 -10.82634 -10.73507 -10.57653 -10.53884 -9.92068 -9.13085 -8.25196 -6.53842 -0.87243 0.16448 0.64294 1.11406 1.29120 1.36441 1.36698 1.45907 1.84678 1.96564 2.11085 2.31859 2.50755 3.04734 3.10791 3.85190 3.97204 4.15047 4.30864 4.36720 4.45181 4.61808 4.63889 4.70148 4.93287 5.09350 5.17792 5.19854 5.39884 5.53493 5.71789 5.78271 5.87892 6.47030 6.49180 6.61572 6.97287 7.22555 8.73426 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.005776 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.445114 B = 4846.322469 C = 5475.603595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.053 3.947 3 N -0.500 5.500 4 C 0.129 3.871 5 C -0.316 4.316 6 C 0.531 3.469 7 O -0.546 6.546 8 O -0.330 6.330 9 C 0.279 3.721 10 H 0.060 0.940 11 C -0.580 4.580 12 H 0.063 0.937 13 C 0.044 3.956 14 N -0.840 5.840 15 Si 0.953 3.047 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.272 1.272 19 C 0.034 3.966 20 C -0.258 4.258 21 C -0.215 4.215 22 C -0.079 4.079 23 O -0.159 6.159 24 S 0.238 5.762 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.194 0.806 29 H 0.269 0.731 30 H 0.147 0.853 31 H 0.173 0.827 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.088 0.320 5.159 11.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.219 4.219 3 N -0.216 5.216 4 C -0.031 4.031 5 C -0.438 4.438 6 C 0.377 3.623 7 O -0.440 6.440 8 O -0.244 6.244 9 C 0.226 3.774 10 H 0.078 0.922 11 C -0.616 4.616 12 H 0.081 0.919 13 C -0.165 4.165 14 N -0.472 5.472 15 Si 0.777 3.223 16 H -0.195 1.195 17 H -0.198 1.198 18 H -0.197 1.197 19 C -0.018 4.018 20 C -0.277 4.277 21 C -0.234 4.234 22 C -0.146 4.146 23 O -0.053 6.053 24 S 0.496 5.504 25 H 0.131 0.869 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.211 0.789 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.190 0.810 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.798 -0.254 4.973 11.891 hybrid contribution 1.877 0.588 -0.894 2.161 sum -8.920 0.334 4.080 9.815 Atomic orbital electron populations 1.20807 0.81156 1.06089 1.06022 1.28505 1.04214 0.91271 0.97940 1.66324 1.03952 1.32082 1.19203 1.22622 0.91566 0.94489 0.94405 1.25147 0.96454 0.98748 1.23498 1.19803 0.87758 0.82364 0.72412 1.90731 1.46261 1.57707 1.49338 1.86823 1.34530 1.21849 1.81231 1.18724 0.77412 0.85943 0.95290 0.92230 1.21377 1.14465 1.30547 0.95180 0.91923 1.25760 0.94534 0.94052 1.02130 1.70185 1.12625 1.27743 1.36683 0.85656 0.78619 0.78793 0.79219 1.19451 1.19764 1.19723 1.22783 0.89973 0.91182 0.97842 1.21576 1.00995 0.99436 1.05711 1.21941 0.98289 0.96685 1.06491 1.24757 0.97698 0.94046 0.98129 1.84276 1.42072 1.22702 1.56287 1.84304 0.93716 1.09194 1.63139 0.86865 0.87885 0.87627 0.78933 0.92177 0.83488 0.80963 0.75510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.46 71.24 0.74 -0.40 16 2 C 0.05 1.36 7.37 88.47 0.65 2.02 16 3 N -0.50 -15.20 10.50 -189.53 -1.99 -17.19 16 4 C 0.13 4.45 11.16 84.48 0.94 5.39 16 5 C -0.32 -12.60 6.52 24.08 0.16 -12.44 16 6 C 0.53 26.11 7.90 69.97 0.55 26.66 16 7 O -0.55 -28.60 16.14 19.46 0.31 -28.28 16 8 O -0.33 -17.48 8.66 -54.97 -0.48 -17.96 16 9 C 0.28 15.04 2.59 29.10 0.08 15.11 16 10 H 0.06 3.22 7.16 -2.38 -0.02 3.20 16 11 C -0.58 -32.91 8.87 25.60 0.23 -32.68 16 12 H 0.06 3.58 7.82 -2.91 -0.02 3.56 16 13 C 0.04 2.42 5.23 84.66 0.44 2.86 16 14 N -0.84 -46.18 11.21 21.45 0.24 -45.94 16 15 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 C 0.03 1.72 5.74 24.83 0.14 1.86 16 20 C -0.26 -11.07 10.81 22.19 0.24 -10.83 16 21 C -0.22 -7.71 10.91 22.19 0.24 -7.47 16 22 C -0.08 -2.92 12.09 66.97 0.81 -2.11 16 23 O -0.16 -7.71 9.66 1.96 0.02 -7.69 16 24 S 0.24 7.56 23.04 -56.49 -1.30 6.26 16 25 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.19 6.15 8.06 -2.91 -0.02 6.12 16 29 H 0.27 13.93 8.31 -92.70 -0.77 13.15 16 30 H 0.15 5.74 8.06 -2.91 -0.02 5.72 16 31 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.23 6.05 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -70.84 309.66 5.22 -65.62 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.16 Total: 12.15 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 5.23 Total: -12.02 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -1.75 Total: -63.12 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -0.14 Total: -53.93 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 7.56 SS G_CDS: -1.30 Total: 6.26 kcal Total: -70.84 5.22 -65.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312701.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.991 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds