Wall clock time and date at job start Tue Mar 31 2020 06:28:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.29390 * 124.70367 * 2 1
4 4 C 1.30920 * 117.46345 * 179.97438 * 3 2 1
5 5 C 1.36749 * 113.93313 * 359.97438 * 4 3 2
6 6 C 1.46499 * 126.18054 * 179.97438 * 5 4 3
7 7 O 1.21615 * 119.99878 * 0.02562 * 6 5 4
8 8 O 1.34876 * 120.00655 * 180.02562 * 6 5 4
9 9 C 1.45196 * 117.00554 * 180.02562 * 8 6 5
10 10 H 1.09005 * 109.47058 * 29.99713 * 9 8 6
11 11 C 1.50699 * 109.47296 * 269.99999 * 9 8 6
12 12 H 1.07993 * 120.00083 * 125.08343 * 11 9 8
13 13 C 1.37881 * 119.99692 * 305.08835 * 11 9 8
14 14 N 1.31509 * 119.99841 * 7.27723 * 13 11 9
15 15 Si 1.86795 * 119.99657 * 187.27770 * 13 11 9
16 16 H 1.48499 * 109.47267 * 84.99064 * 15 13 11
17 17 H 1.48509 * 109.47005 * 204.99177 * 15 13 11
18 18 H 1.48502 * 109.47288 * 324.98850 * 15 13 11
19 19 C 1.50699 * 109.47418 * 149.99715 * 9 8 6
20 20 C 1.34512 * 125.79090 * 213.45232 * 19 9 8
21 21 C 1.41391 * 106.84098 * 180.02562 * 20 19 9
22 22 C 1.34513 * 106.83759 * 359.97438 * 21 20 19
23 23 O 1.34299 * 108.42234 * 359.73903 * 22 21 20
24 24 S 1.70924 * 124.70747 * 179.97438 * 2 1 3
25 25 H 1.09000 * 109.47054 * 270.04201 * 1 2 3
26 26 H 1.09007 * 109.47274 * 30.04382 * 1 2 3
27 27 H 1.09004 * 109.46810 * 150.04151 * 1 2 3
28 28 H 1.08004 * 123.03253 * 180.26784 * 4 3 2
29 29 H 0.97006 * 119.99821 * 179.97438 * 14 13 11
30 30 H 1.08002 * 126.58135 * 0.02909 * 20 19 9
31 31 H 1.07998 * 126.57833 * 179.97438 * 21 20 19
32 32 H 1.08000 * 125.78961 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2437 1.0637 0.0000
4 6 3.5424 0.8987 0.0005
5 6 3.9352 -0.4111 0.0016
6 6 5.3163 -0.8999 0.0018
7 8 6.2409 -0.1098 0.0015
8 8 5.5625 -2.2260 0.0023
9 6 6.9548 -2.6380 0.0031
10 1 7.5555 -1.8875 0.5170
11 6 7.4372 -2.7810 -1.4174
12 1 8.3131 -2.2422 -1.7470
13 6 6.7601 -3.5998 -2.2962
14 7 5.6162 -4.1427 -1.9407
15 14 7.4677 -3.9380 -3.9915
16 1 8.4334 -5.0631 -3.9095
17 1 6.3688 -4.2958 -4.9242
18 1 8.1633 -2.7238 -4.4888
19 6 7.0870 -3.9602 0.7141
20 6 8.1388 -4.3534 1.4547
21 6 7.8429 -5.6519 1.9296
22 6 6.6277 -5.9741 1.4512
23 8 6.1721 -4.9433 0.7207
24 16 2.4802 -1.4051 0.0006
25 1 -0.3633 0.0008 1.0277
26 1 -0.3634 0.8896 -0.5145
27 1 -0.3633 -0.8904 -0.5132
28 1 4.2406 1.7228 0.0048
29 1 5.1397 -4.7184 -2.5591
30 1 9.0370 -3.7861 1.6493
31 1 8.4718 -6.2668 2.5561
32 1 6.1048 -6.9023 1.6286
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001350312701.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 06:28:40
Heat of formation + Delta-G solvation = -39.631674 kcal
Electronic energy + Delta-G solvation = -20793.038491 eV
Core-core repulsion = 17426.106081 eV
Total energy + Delta-G solvation = -3366.932410 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 293.055 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-43.12040 -41.23422 -40.35481 -37.32378 -34.93136 -33.64133 -33.27510 -31.80033
-29.85696 -28.38460 -25.88130 -24.95373 -23.31048 -22.30919 -21.26146 -20.41457
-19.66226 -18.80399 -18.28527 -17.73786 -17.15286 -16.92967 -16.51922 -16.35281
-15.78176 -15.62195 -15.02276 -14.61456 -14.46523 -13.69380 -13.63578 -13.43235
-13.42593 -13.19457 -13.11700 -12.98645 -12.85376 -12.59473 -12.25877 -11.90493
-11.61349 -11.13568 -10.82634 -10.73507 -10.57653 -10.53884 -9.92068 -9.13085
-8.25196 -6.53842 -0.87243 0.16448 0.64294 1.11406 1.29120 1.36441
1.36698 1.45907 1.84678 1.96564 2.11085 2.31859 2.50755 3.04734
3.10791 3.85190 3.97204 4.15047 4.30864 4.36720 4.45181 4.61808
4.63889 4.70148 4.93287 5.09350 5.17792 5.19854 5.39884 5.53493
5.71789 5.78271 5.87892 6.47030 6.49180 6.61572 6.97287 7.22555
8.73426
Molecular weight = 293.06amu
Principal moments of inertia in cm(-1)
A = 0.015411 B = 0.005776 C = 0.005112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1816.445114 B = 4846.322469 C = 5475.603595
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.053 3.947
3 N -0.500 5.500
4 C 0.129 3.871
5 C -0.316 4.316
6 C 0.531 3.469
7 O -0.546 6.546
8 O -0.330 6.330
9 C 0.279 3.721
10 H 0.060 0.940
11 C -0.580 4.580
12 H 0.063 0.937
13 C 0.044 3.956
14 N -0.840 5.840
15 Si 0.953 3.047
16 H -0.269 1.269
17 H -0.273 1.273
18 H -0.272 1.272
19 C 0.034 3.966
20 C -0.258 4.258
21 C -0.215 4.215
22 C -0.079 4.079
23 O -0.159 6.159
24 S 0.238 5.762
25 H 0.113 0.887
26 H 0.103 0.897
27 H 0.105 0.895
28 H 0.194 0.806
29 H 0.269 0.731
30 H 0.147 0.853
31 H 0.173 0.827
32 H 0.229 0.771
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.088 0.320 5.159 11.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.219 4.219
3 N -0.216 5.216
4 C -0.031 4.031
5 C -0.438 4.438
6 C 0.377 3.623
7 O -0.440 6.440
8 O -0.244 6.244
9 C 0.226 3.774
10 H 0.078 0.922
11 C -0.616 4.616
12 H 0.081 0.919
13 C -0.165 4.165
14 N -0.472 5.472
15 Si 0.777 3.223
16 H -0.195 1.195
17 H -0.198 1.198
18 H -0.197 1.197
19 C -0.018 4.018
20 C -0.277 4.277
21 C -0.234 4.234
22 C -0.146 4.146
23 O -0.053 6.053
24 S 0.496 5.504
25 H 0.131 0.869
26 H 0.121 0.879
27 H 0.124 0.876
28 H 0.211 0.789
29 H 0.078 0.922
30 H 0.165 0.835
31 H 0.190 0.810
32 H 0.245 0.755
Dipole moment (debyes) X Y Z Total
from point charges -10.798 -0.254 4.973 11.891
hybrid contribution 1.877 0.588 -0.894 2.161
sum -8.920 0.334 4.080 9.815
Atomic orbital electron populations
1.20807 0.81156 1.06089 1.06022 1.28505 1.04214 0.91271 0.97940
1.66324 1.03952 1.32082 1.19203 1.22622 0.91566 0.94489 0.94405
1.25147 0.96454 0.98748 1.23498 1.19803 0.87758 0.82364 0.72412
1.90731 1.46261 1.57707 1.49338 1.86823 1.34530 1.21849 1.81231
1.18724 0.77412 0.85943 0.95290 0.92230 1.21377 1.14465 1.30547
0.95180 0.91923 1.25760 0.94534 0.94052 1.02130 1.70185 1.12625
1.27743 1.36683 0.85656 0.78619 0.78793 0.79219 1.19451 1.19764
1.19723 1.22783 0.89973 0.91182 0.97842 1.21576 1.00995 0.99436
1.05711 1.21941 0.98289 0.96685 1.06491 1.24757 0.97698 0.94046
0.98129 1.84276 1.42072 1.22702 1.56287 1.84304 0.93716 1.09194
1.63139 0.86865 0.87885 0.87627 0.78933 0.92177 0.83488 0.80963
0.75510
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.14 10.46 71.24 0.74 -0.40 16
2 C 0.05 1.36 7.37 88.47 0.65 2.02 16
3 N -0.50 -15.20 10.50 -189.53 -1.99 -17.19 16
4 C 0.13 4.45 11.16 84.48 0.94 5.39 16
5 C -0.32 -12.60 6.52 24.08 0.16 -12.44 16
6 C 0.53 26.11 7.90 69.97 0.55 26.66 16
7 O -0.55 -28.60 16.14 19.46 0.31 -28.28 16
8 O -0.33 -17.48 8.66 -54.97 -0.48 -17.96 16
9 C 0.28 15.04 2.59 29.10 0.08 15.11 16
10 H 0.06 3.22 7.16 -2.38 -0.02 3.20 16
11 C -0.58 -32.91 8.87 25.60 0.23 -32.68 16
12 H 0.06 3.58 7.82 -2.91 -0.02 3.56 16
13 C 0.04 2.42 5.23 84.66 0.44 2.86 16
14 N -0.84 -46.18 11.21 21.45 0.24 -45.94 16
15 Si 0.95 43.00 29.54 68.60 2.03 45.03 16
16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16
19 C 0.03 1.72 5.74 24.83 0.14 1.86 16
20 C -0.26 -11.07 10.81 22.19 0.24 -10.83 16
21 C -0.22 -7.71 10.91 22.19 0.24 -7.47 16
22 C -0.08 -2.92 12.09 66.97 0.81 -2.11 16
23 O -0.16 -7.71 9.66 1.96 0.02 -7.69 16
24 S 0.24 7.56 23.04 -56.49 -1.30 6.26 16
25 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
26 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16
27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16
28 H 0.19 6.15 8.06 -2.91 -0.02 6.12 16
29 H 0.27 13.93 8.31 -92.70 -0.77 13.15 16
30 H 0.15 5.74 8.06 -2.91 -0.02 5.72 16
31 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16
32 H 0.23 6.05 8.06 -2.91 -0.02 6.02 16
Total: -1.00 -70.84 309.66 5.22 -65.62
By element:
Atomic # 1 Polarization: 11.00 SS G_CDS: 1.16 Total: 12.15 kcal
Atomic # 6 Polarization: -17.24 SS G_CDS: 5.23 Total: -12.02 kcal
Atomic # 7 Polarization: -61.37 SS G_CDS: -1.75 Total: -63.12 kcal
Atomic # 8 Polarization: -53.78 SS G_CDS: -0.14 Total: -53.93 kcal
Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal
Atomic # 16 Polarization: 7.56 SS G_CDS: -1.30 Total: 6.26 kcal
Total: -70.84 5.22 -65.62 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001350312701.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.991 kcal
(2) G-P(sol) polarization free energy of solvation -70.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.632 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds