Wall clock time and date at job start Tue Mar 31 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99438 * 3 2 1 6 6 H 1.48496 * 109.47496 * 59.99848 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 N 1.31129 * 126.55239 * 89.71695 * 15 14 13 17 17 C 1.34499 * 105.61359 * 179.91464 * 16 15 14 18 18 C 1.50701 * 126.28561 * 180.12246 * 17 16 15 19 19 F 1.39905 * 109.46900 * 210.23496 * 18 17 16 20 20 F 1.39901 * 109.47286 * 330.23710 * 18 17 16 21 21 N 1.29948 * 107.42266 * 0.34375 * 17 16 15 22 22 O 1.21297 * 110.25259 * 359.77933 * 21 17 16 23 23 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 25 25 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.08999 * 109.47033 * 90.23728 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.4851 -8.6836 -0.0086 16 7 4.0874 -9.1861 1.0422 17 6 5.0467 -9.9947 0.5575 18 6 6.0183 -10.8121 1.3692 19 9 7.2157 -10.9532 0.6595 20 9 6.2697 -10.1662 2.5845 21 7 4.9848 -9.9380 -0.7393 22 8 4.0943 -9.1903 -1.0848 23 1 -0.4849 0.8400 -0.0004 24 1 3.1246 -3.7313 0.8905 25 1 3.1246 -3.7313 -0.8894 26 1 3.8011 -6.1834 0.0015 27 1 1.7226 -7.8789 0.8860 28 1 1.7214 -7.8714 -0.8939 29 1 5.5923 -11.7966 1.5623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351996063.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:50 Heat of formation + Delta-G solvation = -60.318621 kcal Electronic energy + Delta-G solvation = -19749.993539 eV Core-core repulsion = 15860.227297 eV Total energy + Delta-G solvation = -3889.766242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.69027 -47.70801 -46.37782 -39.44714 -36.72665 -35.42679 -33.06474 -32.47115 -30.03501 -28.54057 -27.22006 -25.50677 -24.26828 -22.42621 -20.78505 -19.07945 -18.92216 -18.05851 -17.92024 -17.66334 -17.06832 -16.57920 -16.32928 -15.54464 -14.84051 -14.61551 -14.40722 -14.05632 -14.03203 -13.98343 -13.62464 -13.28176 -13.02523 -12.65092 -12.61857 -12.17939 -11.97553 -11.81101 -11.09739 -11.07202 -10.96159 -10.78527 -9.86810 -9.66585 -9.32677 -9.10894 -8.31256 -6.56256 -6.26351 -3.97602 0.30597 1.26889 1.98906 2.23236 2.83661 2.88307 3.02070 3.19472 3.25310 3.29052 3.29778 3.57101 3.85775 4.08221 4.15743 4.37495 4.61904 4.89200 4.95965 5.09445 5.17881 5.20036 5.55848 5.78104 6.03199 6.13424 7.31476 7.32879 7.56218 8.30365 8.31577 9.19566 10.81135 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.002632 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.284508 B =10636.347322 C =11121.128488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.541 3.459 12 O -0.508 6.508 13 N -0.738 5.738 14 C 0.217 3.783 15 C 0.183 3.817 16 N -0.438 5.438 17 C 0.087 3.913 18 C 0.379 3.621 19 F -0.181 7.181 20 F -0.174 7.174 21 N -0.339 5.339 22 O 0.108 5.892 23 H 0.268 0.732 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.404 0.596 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.489 -21.755 0.757 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.304 4.304 11 C 0.328 3.672 12 O -0.381 6.381 13 N -0.397 5.397 14 C 0.091 3.909 15 C -0.038 4.038 16 N -0.171 5.171 17 C -0.187 4.187 18 C 0.324 3.676 19 F -0.162 7.162 20 F -0.155 7.155 21 N -0.039 5.039 22 O 0.041 5.959 23 H 0.078 0.922 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.238 0.762 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.999 -22.523 0.716 24.264 hybrid contribution 2.498 1.456 -0.032 2.892 sum 11.497 -21.066 0.684 24.009 Atomic orbital electron populations 1.70018 1.05954 1.27451 1.46802 1.24993 0.95034 0.99067 0.94433 0.86107 0.79590 0.81809 0.77939 1.19606 1.20538 1.20529 1.22903 0.94980 0.91523 1.59067 0.90775 1.85401 1.04490 0.96376 1.96758 1.23539 1.06955 0.94503 1.05378 1.20367 0.86255 0.85954 0.74642 1.90740 1.15091 1.85290 1.46946 1.45976 1.10781 1.03731 1.79188 1.19695 0.86851 0.77461 1.06902 1.28965 0.97440 0.97558 0.79848 1.71929 1.06766 1.09794 1.28651 1.26462 1.00469 1.02130 0.89660 1.19186 0.78936 0.94397 0.75116 1.93094 1.47806 1.96408 1.78862 1.93107 1.94415 1.84056 1.43911 1.74713 1.05413 1.09356 1.14456 1.85397 1.32742 1.42102 1.35684 0.92167 0.88821 0.88817 0.76172 0.86225 0.86990 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.56 13.22 55.49 0.73 -24.83 15 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 15 3 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.54 -14.84 9.50 30.94 0.29 -14.55 15 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 15 9 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 15 10 C -0.15 -2.85 6.16 36.01 0.22 -2.63 15 11 C 0.54 8.87 7.85 -10.98 -0.09 8.78 15 12 O -0.51 -10.17 15.86 5.55 0.09 -10.08 15 13 N -0.74 -8.32 5.55 -61.47 -0.34 -8.67 15 14 C 0.22 1.94 6.30 -5.19 -0.03 1.91 15 15 C 0.18 1.65 7.88 -13.06 -0.10 1.55 15 16 N -0.44 -4.52 11.51 -9.87 -0.11 -4.64 15 17 C 0.09 0.84 7.71 -156.37 -1.21 -0.36 15 18 C 0.38 2.75 5.86 36.01 0.21 2.96 15 19 F -0.18 -1.59 17.28 2.25 0.04 -1.55 15 20 F -0.17 -1.60 17.29 2.25 0.04 -1.56 15 21 N -0.34 -3.50 12.10 30.90 0.37 -3.13 15 22 O 0.11 1.02 11.31 18.10 0.20 1.23 15 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 24 H 0.09 1.62 8.14 -51.92 -0.42 1.19 15 25 H 0.09 1.59 8.14 -51.91 -0.42 1.17 15 26 H 0.40 3.77 8.46 -40.82 -0.35 3.43 15 27 H 0.12 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.11 0.86 8.14 -51.93 -0.42 0.44 15 29 H 0.15 0.43 8.14 -51.93 -0.42 0.00 15 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -34.28 297.59 -4.53 -38.80 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -2.00 Total: -2.01 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.80 Total: -0.37 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.65 Total: -41.26 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.29 Total: -8.85 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.28 -4.53 -38.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351996063.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.514 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds