Wall clock time and date at job start Tue Mar 31 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99438 * 3 2 1 6 6 H 1.48496 * 109.47496 * 59.99848 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 N 1.31129 * 126.55239 * 89.71695 * 15 14 13 17 17 C 1.34499 * 105.61359 * 179.91464 * 16 15 14 18 18 C 1.50701 * 126.28561 * 180.12246 * 17 16 15 19 19 F 1.39905 * 109.46900 * 210.23496 * 18 17 16 20 20 F 1.39901 * 109.47286 * 330.23710 * 18 17 16 21 21 N 1.29948 * 107.42266 * 0.34375 * 17 16 15 22 22 O 1.21297 * 110.25259 * 359.77933 * 21 17 16 23 23 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 25 25 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.08999 * 109.47033 * 90.23728 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.4851 -8.6836 -0.0086 16 7 4.0874 -9.1861 1.0422 17 6 5.0467 -9.9947 0.5575 18 6 6.0183 -10.8121 1.3692 19 9 7.2157 -10.9532 0.6595 20 9 6.2697 -10.1662 2.5845 21 7 4.9848 -9.9380 -0.7393 22 8 4.0943 -9.1903 -1.0848 23 1 -0.4849 0.8400 -0.0004 24 1 3.1246 -3.7313 0.8905 25 1 3.1246 -3.7313 -0.8894 26 1 3.8011 -6.1834 0.0015 27 1 1.7226 -7.8789 0.8860 28 1 1.7214 -7.8714 -0.8939 29 1 5.5923 -11.7966 1.5623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351996063.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:49 Heat of formation + Delta-G solvation = -87.270281 kcal Electronic energy + Delta-G solvation = -19751.162250 eV Core-core repulsion = 15860.227297 eV Total energy + Delta-G solvation = -3890.934954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.30414 -48.33529 -47.12681 -40.71400 -37.50059 -36.42974 -34.56738 -33.97913 -31.33585 -29.17992 -28.29844 -27.55370 -25.01361 -23.15723 -21.99584 -20.05838 -19.77888 -19.46994 -18.52358 -18.45432 -17.91207 -17.73607 -17.42618 -16.86295 -16.71594 -15.87228 -15.48773 -15.13663 -14.93114 -14.65869 -14.57357 -14.46952 -14.32647 -13.88274 -13.34480 -13.32544 -13.14188 -12.90330 -12.80091 -12.60990 -12.56153 -11.75976 -11.67080 -11.14277 -11.03229 -10.37592 -10.25846 -8.63515 -8.33622 -6.10369 -0.43892 0.51837 1.18607 1.33519 1.42423 1.49712 1.53750 1.58764 1.63228 2.20402 2.28194 2.34429 2.81267 3.01111 3.18231 3.31607 3.59270 3.75701 3.84490 3.99889 4.17433 4.32628 4.45066 4.46585 4.54922 5.08541 5.44663 6.21614 6.25146 6.60018 7.07328 7.08882 8.75612 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.030451 B = 0.002632 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.284508 B =10636.347322 C =11121.128488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.143 6.143 10 C -0.133 4.133 11 C 0.549 3.451 12 O -0.549 6.549 13 N -0.716 5.716 14 C 0.219 3.781 15 C 0.194 3.806 16 N -0.454 5.454 17 C 0.084 3.916 18 C 0.376 3.624 19 F -0.191 7.191 20 F -0.186 7.186 21 N -0.353 5.353 22 O 0.110 5.890 23 H 0.271 0.729 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.416 0.584 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.277 -22.474 0.800 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.084 5.916 10 C -0.284 4.284 11 C 0.335 3.665 12 O -0.425 6.425 13 N -0.374 5.374 14 C 0.094 3.906 15 C -0.027 4.027 16 N -0.188 5.188 17 C -0.190 4.190 18 C 0.322 3.678 19 F -0.172 7.172 20 F -0.167 7.167 21 N -0.054 5.054 22 O 0.043 5.957 23 H 0.080 0.920 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.253 0.747 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.836 -23.277 0.755 25.687 hybrid contribution 2.004 1.536 -0.049 2.525 sum 12.840 -21.741 0.706 25.260 Atomic orbital electron populations 1.70170 1.07860 1.28531 1.48076 1.26066 0.95924 1.03162 0.93812 0.84949 0.78611 0.76632 0.78034 1.18197 1.19990 1.20038 1.23249 0.95386 0.92156 1.58690 0.89952 1.85514 1.10028 0.98960 1.97052 1.23381 1.03869 0.93988 1.07147 1.19865 0.85900 0.86029 0.74657 1.90737 1.16783 1.85709 1.49287 1.45609 1.10848 1.03826 1.77087 1.19823 0.86847 0.75746 1.08185 1.28805 0.96995 0.97232 0.79647 1.71943 1.07315 1.10334 1.29183 1.26914 1.00539 1.01905 0.89643 1.19797 0.78223 0.95785 0.74043 1.93071 1.48530 1.96433 1.79133 1.93078 1.94465 1.84568 1.44616 1.74714 1.05830 1.09962 1.14934 1.85390 1.32643 1.42015 1.35627 0.91993 0.87122 0.86832 0.74690 0.85642 0.85201 0.78851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.59 13.22 21.65 0.29 -54.31 15 2 C 0.02 0.85 5.49 84.86 0.47 1.32 15 3 Si 1.00 42.79 29.55 68.60 2.03 44.82 15 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 15 5 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 7 C -0.55 -30.27 9.50 67.96 0.65 -29.63 15 8 H 0.08 4.25 7.80 -2.91 -0.02 4.22 15 9 S -0.14 -7.51 20.57 -56.49 -1.16 -8.67 15 10 C -0.13 -4.77 6.16 71.24 0.44 -4.33 15 11 C 0.55 17.29 7.85 87.66 0.69 17.98 15 12 O -0.55 -21.83 15.86 -3.04 -0.05 -21.88 15 13 N -0.72 -14.54 5.55 -466.79 -2.59 -17.13 15 14 C 0.22 3.44 6.30 85.63 0.54 3.98 15 15 C 0.19 3.09 7.88 88.38 0.70 3.79 15 16 N -0.45 -8.47 11.51 -303.19 -3.49 -11.96 15 17 C 0.08 1.47 7.71 138.46 1.07 2.53 15 18 C 0.38 4.66 5.86 71.24 0.42 5.07 15 19 F -0.19 -3.03 17.28 44.97 0.78 -2.26 15 20 F -0.19 -3.11 17.29 44.97 0.78 -2.33 15 21 N -0.35 -6.68 12.10 -60.32 -0.73 -7.41 15 22 O 0.11 1.87 11.31 74.83 0.85 2.71 15 23 H 0.27 15.08 8.31 -92.72 -0.77 14.31 15 24 H 0.11 3.61 8.14 -2.40 -0.02 3.59 15 25 H 0.11 3.64 8.14 -2.39 -0.02 3.62 15 26 H 0.42 6.61 8.46 -92.71 -0.78 5.83 15 27 H 0.13 1.97 8.14 -2.38 -0.02 1.95 15 28 H 0.13 1.70 8.14 -2.39 -0.02 1.68 15 29 H 0.20 0.51 8.14 -2.39 -0.02 0.49 15 Total: -1.00 -75.39 297.59 2.10 -73.29 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.45 Total: 4.41 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 4.96 Total: 0.71 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -6.52 Total: -90.81 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.80 Total: -19.16 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.55 Total: -4.59 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.16 Total: -8.67 kcal Total: -75.39 2.10 -73.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351996063.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.982 kcal (2) G-P(sol) polarization free energy of solvation -75.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds