Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.44622 * 123.57974 * 224.11746 * 3 2 1 5 5 C 1.32591 * 113.14503 * 179.97438 * 4 3 2 6 6 S 1.75468 * 110.79184 * 359.76067 * 5 4 3 7 7 C 1.36991 * 123.58440 * 44.07864 * 3 2 1 8 8 N 1.38808 * 124.64936 * 0.02562 * 7 3 2 9 9 C 1.34772 * 120.00047 * 180.02562 * 8 7 3 10 10 O 1.21577 * 120.00381 * 359.97438 * 9 8 7 11 11 N 1.34785 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.47576 * 134.49390 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11846 * 155.36116 * 12 11 9 14 14 O 1.42894 * 113.74258 * 269.15648 * 13 12 11 15 15 C 1.50696 * 113.73834 * 137.95019 * 13 12 11 16 16 H 1.07999 * 120.00319 * 1.93267 * 15 13 12 17 17 C 1.37885 * 119.99717 * 181.92651 * 15 13 12 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47805 * 134.45494 * 359.86902 * 11 9 8 24 24 H 1.07997 * 123.42389 * 359.96127 * 4 3 2 25 25 H 1.08005 * 124.60054 * 179.97438 * 5 4 3 26 26 H 0.97004 * 120.00070 * 359.97438 * 8 7 3 27 27 H 1.08999 * 113.76805 * 41.06190 * 12 11 9 28 28 H 1.09001 * 113.77518 * 269.66882 * 12 11 9 29 29 H 0.96701 * 113.99575 * 178.07128 * 14 13 12 30 30 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 31 31 H 1.09008 * 113.77106 * 90.37414 * 23 11 9 32 32 H 1.08997 * 113.84172 * 318.91386 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3675 0.8660 0.8387 5 6 4.6715 0.6938 0.6720 6 16 4.9875 -0.5504 -0.5243 7 6 3.3261 -0.8189 -0.7939 8 7 2.8118 -1.7448 -1.6910 9 6 3.6462 -2.5054 -2.4270 10 8 4.8494 -2.3801 -2.3056 11 7 3.1467 -3.4048 -3.2978 12 6 3.7413 -4.3751 -4.2375 13 6 2.4217 -5.1563 -4.1021 14 8 2.4346 -6.1306 -3.0570 15 6 1.9029 -5.7018 -5.4076 16 1 2.4671 -5.5545 -6.3167 17 6 0.7081 -6.3890 -5.4414 18 7 0.2556 -6.8655 -6.5806 19 14 -0.2679 -6.6433 -3.8691 20 1 0.1570 -7.9106 -3.2221 21 1 -0.0208 -5.5081 -2.9440 22 1 -1.7159 -6.7132 -4.1912 23 6 1.7833 -3.8163 -3.6930 24 1 2.9452 1.5799 1.5304 25 1 5.4355 1.2423 1.2031 26 1 1.8518 -1.8450 -1.7877 27 1 4.6069 -4.9019 -3.8359 28 1 3.9127 -3.9718 -5.2355 29 1 1.5977 -6.6031 -2.9494 30 1 -0.5848 -7.3494 -6.6043 31 1 1.3784 -3.2485 -4.5309 32 1 1.0881 -3.8978 -2.8575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466998212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = 42.333079 kcal Electronic energy + Delta-G solvation = -20490.182393 eV Core-core repulsion = 17159.096992 eV Total energy + Delta-G solvation = -3331.085401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63795 -38.92095 -37.89102 -35.93510 -34.70960 -34.63656 -32.67564 -29.92529 -28.37261 -26.02604 -25.59120 -24.48555 -21.66495 -20.95717 -19.69066 -19.00133 -18.02729 -17.50429 -16.49817 -16.43072 -15.84376 -15.75477 -14.85759 -14.41016 -14.40043 -13.88511 -13.79283 -13.51196 -13.28996 -13.06099 -12.76783 -12.74189 -12.45682 -12.35216 -12.01924 -11.47709 -11.26217 -11.07130 -11.01213 -10.73148 -10.27187 -10.06614 -9.55518 -9.20299 -8.91568 -8.62558 -8.40391 -8.06001 -6.53854 -4.61650 0.69961 1.17099 1.86114 1.89241 2.39824 2.65609 2.89710 2.91279 3.04916 3.07128 3.46196 3.73456 3.91940 4.06431 4.52483 4.83689 4.90023 5.04954 5.34941 5.51143 5.65540 5.78834 5.82686 5.86066 6.04220 6.09591 6.12287 6.14230 6.40546 6.83955 7.05724 7.48688 7.89156 7.94834 8.30172 8.36155 8.49953 9.02634 10.58026 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023741 B = 0.004466 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.093147 B = 6268.291598 C = 7095.406497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.279 3.721 3 C -0.150 4.150 4 C -0.068 4.068 5 C -0.297 4.297 6 S 0.327 5.673 7 C 0.100 3.900 8 N -0.645 5.645 9 C 0.716 3.284 10 O -0.566 6.566 11 N -0.641 5.641 12 C 0.151 3.849 13 C 0.199 3.801 14 O -0.552 6.552 15 C -0.540 4.540 16 H 0.094 0.906 17 C 0.083 3.917 18 N -0.872 5.872 19 Si 0.857 3.143 20 H -0.265 1.265 21 H -0.258 1.258 22 H -0.281 1.281 23 C 0.056 3.944 24 H 0.146 0.854 25 H 0.169 0.831 26 H 0.415 0.585 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.354 0.646 30 H 0.272 0.728 31 H 0.100 0.900 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.585 11.790 11.089 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.036 4.036 3 C -0.171 4.171 4 C -0.098 4.098 5 C -0.433 4.433 6 S 0.587 5.413 7 C -0.124 4.124 8 N -0.289 5.289 9 C 0.419 3.581 10 O -0.445 6.445 11 N -0.376 5.376 12 C 0.029 3.971 13 C 0.158 3.842 14 O -0.363 6.363 15 C -0.577 4.577 16 H 0.112 0.888 17 C -0.123 4.123 18 N -0.507 5.507 19 Si 0.685 3.315 20 H -0.191 1.191 21 H -0.184 1.184 22 H -0.208 1.208 23 C -0.066 4.066 24 H 0.164 0.836 25 H 0.187 0.813 26 H 0.252 0.748 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.206 0.794 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.511 11.388 10.566 17.255 hybrid contribution -2.940 0.266 1.275 3.216 sum 4.570 11.654 11.841 17.231 Atomic orbital electron populations 1.81275 1.11689 1.09032 1.09151 1.24966 0.91744 0.93468 0.93445 1.15951 0.85449 1.07419 1.08275 1.20533 0.91795 0.98687 0.98769 1.25974 1.00069 1.08415 1.08825 1.84520 0.94614 1.29702 1.32496 1.21996 1.01998 0.93985 0.94452 1.42063 1.10943 1.36685 1.39230 1.15487 0.84455 0.78503 0.79696 1.90797 1.12319 1.70687 1.70742 1.49362 1.11864 1.37217 1.39181 1.23337 0.98218 0.84280 0.91217 1.20491 0.92211 0.84534 0.86992 1.86468 1.38725 1.54462 1.56659 1.21177 1.06917 1.36795 0.92825 0.88828 1.24995 0.96970 0.94233 0.96137 1.69843 1.21089 1.34680 1.25049 0.87375 0.80590 0.79785 0.83770 1.19128 1.18370 1.20769 1.24894 0.84156 0.98479 0.99119 0.83620 0.81346 0.74838 0.89955 0.88195 0.79394 0.91711 0.88162 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.77 18.54 41.84 0.78 -6.00 16 2 C 0.28 3.84 14.98 -22.48 -0.34 3.50 16 3 C -0.15 -1.82 5.88 -105.91 -0.62 -2.44 16 4 C -0.07 -0.64 10.35 -38.97 -0.40 -1.04 16 5 C -0.30 -2.57 11.10 28.83 0.32 -2.25 16 6 S 0.33 3.78 19.96 -107.50 -2.15 1.63 16 7 C 0.10 1.33 6.98 -14.84 -0.10 1.23 16 8 N -0.65 -9.58 5.37 -16.00 -0.09 -9.67 16 9 C 0.72 12.43 8.72 -86.91 -0.76 11.68 16 10 O -0.57 -10.50 14.49 5.30 0.08 -10.43 16 11 N -0.64 -11.57 3.61 -183.86 -0.66 -12.24 16 12 C 0.15 2.81 8.23 -2.97 -0.02 2.79 16 13 C 0.20 4.18 1.06 -90.84 -0.10 4.09 16 14 O -0.55 -12.16 13.35 -35.23 -0.47 -12.63 16 15 C -0.54 -13.09 9.19 -34.44 -0.32 -13.41 16 16 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 18 N -0.87 -23.52 13.96 55.43 0.77 -22.75 16 19 Si 0.86 18.12 24.31 -169.99 -4.13 13.99 16 20 H -0.27 -5.48 7.05 56.52 0.40 -5.08 16 21 H -0.26 -5.08 5.16 56.52 0.29 -4.79 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 C 0.06 1.03 6.93 -2.83 -0.02 1.01 16 24 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 25 H 0.17 0.98 8.06 -52.48 -0.42 0.55 16 26 H 0.41 5.83 7.76 -40.82 -0.32 5.51 16 27 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.10 1.71 8.09 -51.93 -0.42 1.29 16 29 H 0.35 7.50 3.57 45.56 0.16 7.66 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 32 H 0.07 1.22 6.83 -51.93 -0.35 0.87 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -28.39 296.76 -6.15 -34.54 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -2.29 Total: 11.96 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.46 Total: 7.12 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.80 Total: -50.65 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.39 Total: -23.06 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -4.13 Total: 13.99 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -2.15 Total: 1.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.39 -6.15 -34.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466998212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.872 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds