Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.44622 * 123.57974 * 224.11746 * 3 2 1 5 5 C 1.32591 * 113.14503 * 179.97438 * 4 3 2 6 6 S 1.75468 * 110.79184 * 359.76067 * 5 4 3 7 7 C 1.36991 * 123.58440 * 44.07864 * 3 2 1 8 8 N 1.38808 * 124.64936 * 0.02562 * 7 3 2 9 9 C 1.34772 * 120.00047 * 180.02562 * 8 7 3 10 10 O 1.21577 * 120.00381 * 359.97438 * 9 8 7 11 11 N 1.34785 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.47576 * 134.49390 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11846 * 155.36116 * 12 11 9 14 14 O 1.42894 * 113.74258 * 269.15648 * 13 12 11 15 15 C 1.50696 * 113.73834 * 137.95019 * 13 12 11 16 16 H 1.07999 * 120.00319 * 1.93267 * 15 13 12 17 17 C 1.37885 * 119.99717 * 181.92651 * 15 13 12 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47805 * 134.45494 * 359.86902 * 11 9 8 24 24 H 1.07997 * 123.42389 * 359.96127 * 4 3 2 25 25 H 1.08005 * 124.60054 * 179.97438 * 5 4 3 26 26 H 0.97004 * 120.00070 * 359.97438 * 8 7 3 27 27 H 1.08999 * 113.76805 * 41.06190 * 12 11 9 28 28 H 1.09001 * 113.77518 * 269.66882 * 12 11 9 29 29 H 0.96701 * 113.99575 * 178.07128 * 14 13 12 30 30 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 31 31 H 1.09008 * 113.77106 * 90.37414 * 23 11 9 32 32 H 1.08997 * 113.84172 * 318.91386 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3675 0.8660 0.8387 5 6 4.6715 0.6938 0.6720 6 16 4.9875 -0.5504 -0.5243 7 6 3.3261 -0.8189 -0.7939 8 7 2.8118 -1.7448 -1.6910 9 6 3.6462 -2.5054 -2.4270 10 8 4.8494 -2.3801 -2.3056 11 7 3.1467 -3.4048 -3.2978 12 6 3.7413 -4.3751 -4.2375 13 6 2.4217 -5.1563 -4.1021 14 8 2.4346 -6.1306 -3.0570 15 6 1.9029 -5.7018 -5.4076 16 1 2.4671 -5.5545 -6.3167 17 6 0.7081 -6.3890 -5.4414 18 7 0.2556 -6.8655 -6.5806 19 14 -0.2679 -6.6433 -3.8691 20 1 0.1570 -7.9106 -3.2221 21 1 -0.0208 -5.5081 -2.9440 22 1 -1.7159 -6.7132 -4.1912 23 6 1.7833 -3.8163 -3.6930 24 1 2.9452 1.5799 1.5304 25 1 5.4355 1.2423 1.2031 26 1 1.8518 -1.8450 -1.7877 27 1 4.6069 -4.9019 -3.8359 28 1 3.9127 -3.9718 -5.2355 29 1 1.5977 -6.6031 -2.9494 30 1 -0.5848 -7.3494 -6.6043 31 1 1.3784 -3.2485 -4.5309 32 1 1.0881 -3.8978 -2.8575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466998212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = 21.480844 kcal Electronic energy + Delta-G solvation = -20491.086613 eV Core-core repulsion = 17159.096992 eV Total energy + Delta-G solvation = -3331.989621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.97638 -40.26813 -39.02597 -37.03346 -36.33439 -35.73872 -34.57972 -31.22782 -29.60307 -27.51784 -27.19025 -25.57628 -22.88076 -22.04229 -21.09611 -20.12087 -19.56050 -19.07947 -18.11872 -17.60308 -17.15767 -16.97413 -15.96915 -15.74129 -15.50614 -15.32529 -15.13701 -14.98789 -14.65643 -14.32935 -14.28669 -13.98691 -13.73831 -13.55664 -13.09460 -12.90513 -12.74601 -12.51413 -12.33727 -12.01526 -12.00094 -11.34759 -11.12308 -10.95084 -10.61253 -9.95147 -9.36065 -9.10464 -8.45735 -6.58082 -0.27897 0.26841 0.86329 1.10022 1.21667 1.23762 1.31511 1.36761 1.62442 1.75306 2.13829 2.42152 2.43544 2.75685 3.05542 3.22550 3.75005 3.93983 4.15857 4.25759 4.31327 4.40102 4.61981 4.65685 4.78906 4.86935 4.94919 5.22099 5.24104 5.32064 5.63574 6.01011 6.42499 6.51390 6.56883 6.65048 7.00017 7.10584 8.69377 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023741 B = 0.004466 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.093147 B = 6268.291598 C = 7095.406497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.294 3.706 3 C -0.142 4.142 4 C -0.073 4.073 5 C -0.265 4.265 6 S 0.307 5.693 7 C 0.070 3.930 8 N -0.642 5.642 9 C 0.717 3.283 10 O -0.581 6.581 11 N -0.644 5.644 12 C 0.154 3.846 13 C 0.186 3.814 14 O -0.559 6.559 15 C -0.542 4.542 16 H 0.063 0.937 17 C 0.033 3.967 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.256 1.256 21 H -0.233 1.233 22 H -0.285 1.285 23 C 0.068 3.932 24 H 0.175 0.825 25 H 0.206 0.794 26 H 0.417 0.583 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.357 0.643 30 H 0.273 0.727 31 H 0.108 0.892 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 13.659 13.793 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.020 4.020 3 C -0.164 4.164 4 C -0.102 4.102 5 C -0.400 4.400 6 S 0.568 5.432 7 C -0.152 4.152 8 N -0.287 5.287 9 C 0.420 3.580 10 O -0.462 6.462 11 N -0.380 5.380 12 C 0.032 3.968 13 C 0.145 3.855 14 O -0.370 6.370 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.169 4.169 18 N -0.559 5.559 19 Si 0.737 3.263 20 H -0.181 1.181 21 H -0.157 1.157 22 H -0.212 1.212 23 C -0.054 4.054 24 H 0.192 0.808 25 H 0.223 0.777 26 H 0.254 0.746 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.209 0.791 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.052 13.296 13.307 20.462 hybrid contribution -2.970 -0.222 0.455 3.013 sum 5.081 13.074 13.762 19.650 Atomic orbital electron populations 1.81291 1.12786 1.10269 1.10387 1.25189 0.91967 0.92439 0.92420 1.16251 0.84682 1.07332 1.08135 1.20819 0.91698 0.98803 0.98881 1.26261 1.00605 1.06382 1.06757 1.84592 0.94015 1.30968 1.33636 1.22214 1.02906 0.94774 0.95348 1.41848 1.10681 1.36802 1.39358 1.15473 0.84515 0.78500 0.79557 1.90797 1.12974 1.71212 1.71197 1.49187 1.11355 1.37829 1.39616 1.23270 0.97101 0.84302 0.92145 1.20554 0.94236 0.85209 0.85502 1.86463 1.39137 1.54938 1.56469 1.21331 1.06554 1.36616 0.93454 0.91928 1.25749 0.98062 0.93943 0.99162 1.69982 1.21904 1.36424 1.27547 0.86448 0.78564 0.80906 0.80378 1.18123 1.15726 1.21206 1.24666 0.84493 0.96484 0.99775 0.80780 0.77704 0.74586 0.89948 0.87163 0.79117 0.91711 0.87376 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.99 18.54 19.00 0.35 -13.64 16 2 C 0.29 7.53 14.98 88.33 1.32 8.85 16 3 C -0.14 -3.07 5.88 -20.70 -0.12 -3.19 16 4 C -0.07 -1.09 10.35 22.74 0.24 -0.85 16 5 C -0.26 -3.45 11.10 66.66 0.74 -2.71 16 6 S 0.31 6.39 19.96 -56.49 -1.13 5.26 16 7 C 0.07 1.73 6.98 83.29 0.58 2.31 16 8 N -0.64 -18.14 5.37 -322.79 -1.73 -19.87 16 9 C 0.72 24.01 8.72 179.05 1.56 25.57 16 10 O -0.58 -20.96 14.49 -3.96 -0.06 -21.02 16 11 N -0.64 -22.49 3.61 -857.70 -3.10 -25.59 16 12 C 0.15 5.65 8.23 86.49 0.71 6.36 16 13 C 0.19 7.70 1.06 -10.88 -0.01 7.69 16 14 O -0.56 -23.86 13.35 -148.98 -1.99 -25.85 16 15 C -0.54 -26.73 9.19 25.60 0.24 -26.49 16 16 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 17 C 0.03 1.64 5.47 84.66 0.46 2.11 16 18 N -0.92 -51.12 13.96 21.45 0.30 -50.82 16 19 Si 0.91 36.85 24.31 68.60 1.67 38.52 16 20 H -0.26 -9.91 7.05 99.48 0.70 -9.21 16 21 H -0.23 -8.39 5.16 99.48 0.51 -7.87 16 22 H -0.29 -11.70 7.11 99.48 0.71 -11.00 16 23 C 0.07 2.41 6.93 86.45 0.60 3.01 16 24 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 25 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 26 H 0.42 11.11 7.76 -92.71 -0.72 10.39 16 27 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.11 3.77 8.09 -2.39 -0.02 3.75 16 29 H 0.36 14.43 3.57 -74.06 -0.26 14.16 16 30 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.11 3.63 8.09 -2.38 -0.02 3.61 16 32 H 0.08 2.65 6.83 -2.39 -0.02 2.63 16 Total: -1.00 -61.94 296.76 0.65 -61.29 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.02 Total: 29.06 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.32 Total: 22.66 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.18 Total: -109.93 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.05 Total: -46.86 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 1.67 Total: 38.52 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -1.13 Total: 5.26 kcal Total: -61.94 0.65 -61.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466998212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.766 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds