Wall clock time and date at job start Tue Mar 31 2020 06:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46992 * 179.48130 * 3 2 1 5 5 C 1.36942 * 119.99955 * 269.71533 * 4 3 2 6 6 H 1.07999 * 120.00263 * 189.27514 * 5 4 3 7 7 C 1.39000 * 119.99771 * 9.28516 * 5 4 3 8 8 N 1.31401 * 119.99835 * 25.04854 * 7 5 4 9 9 Si 1.86796 * 119.99745 * 205.05175 * 7 5 4 10 10 H 1.48504 * 109.47200 * 89.99501 * 9 7 5 11 11 H 1.48503 * 109.47076 * 209.99595 * 9 7 5 12 12 H 1.48497 * 109.47295 * 329.99785 * 9 7 5 13 13 C 1.34776 * 120.00490 * 89.71733 * 4 3 2 14 14 O 1.21662 * 120.00254 * 180.02562 * 13 4 3 15 15 C 1.47107 * 119.99585 * 359.72434 * 13 4 3 16 16 C 1.39924 * 120.95250 * 269.99878 * 15 13 4 17 17 C 1.50702 * 120.46365 * 359.97438 * 16 15 13 18 18 N 1.32065 * 119.06488 * 179.97438 * 16 15 13 19 19 C 1.32594 * 121.16735 * 359.97438 * 18 16 15 20 20 O 1.35302 * 118.94412 * 180.02562 * 19 18 16 21 21 N 1.32239 * 122.11071 * 0.02562 * 19 18 16 22 22 C 1.32927 * 120.79665 * 359.72132 * 21 19 18 23 23 S 1.76195 * 120.62253 * 180.26437 * 22 21 19 24 24 H 4.40643 * 5.51453 * 180.02562 * 4 1 2 25 25 H 1.08995 * 109.46915 * 59.47634 * 3 2 1 26 26 H 1.09002 * 109.46560 * 299.47731 * 3 2 1 27 27 H 0.96999 * 119.99667 * 180.02562 * 8 7 5 28 28 H 1.09008 * 109.46630 * 90.00561 * 17 16 15 29 29 H 1.08997 * 109.46959 * 209.99960 * 17 16 15 30 30 H 1.08992 * 109.47691 * 330.00385 * 17 16 15 31 31 H 0.96703 * 113.99630 * 90.00786 * 20 19 18 32 32 H 1.40998 * 100.00303 * 270.26467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3820 -0.0125 5 6 3.3672 2.0149 -1.2042 6 1 3.8654 2.9730 -1.2183 7 6 2.9628 1.4242 -2.3957 8 7 1.9695 0.5641 -2.3986 9 14 3.8317 1.8532 -3.9927 10 1 4.9676 0.9203 -4.2044 11 1 2.8763 1.7344 -5.1234 12 1 4.3420 3.2458 -3.9201 13 6 3.3526 2.0300 1.1488 14 8 3.7572 3.1773 1.1384 15 6 3.0961 1.3521 2.4289 16 6 1.8408 1.4246 3.0427 17 6 0.7207 2.2029 2.4018 18 7 1.6514 0.8013 4.1915 19 6 2.6269 0.1122 4.7674 20 8 2.3832 -0.5094 5.9441 21 7 3.8304 0.0130 4.2284 22 6 4.1085 0.6042 3.0707 23 16 5.7116 0.4633 2.3533 24 1 -1.0502 -0.0004 0.0002 25 1 3.0096 -0.5211 -0.8852 26 1 3.0095 -0.5049 0.8947 27 1 1.6875 0.1517 -3.2301 28 1 0.1542 1.5469 1.7408 29 1 0.0616 2.5955 3.1762 30 1 1.1360 3.0292 1.8250 31 1 2.0575 -1.4152 5.8504 32 1 6.3409 1.5811 2.9385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521553333.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:22 Heat of formation + Delta-G solvation = 64.832363 kcal Electronic energy + Delta-G solvation = -21524.997266 eV Core-core repulsion = 18194.887508 eV Total energy + Delta-G solvation = -3330.109758 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14049 -38.77780 -37.22199 -35.33223 -34.40264 -32.46678 -31.57322 -31.30600 -28.64093 -26.61918 -25.49294 -24.06143 -23.06089 -20.07703 -19.15868 -18.26190 -18.02328 -17.28639 -16.91282 -16.49357 -16.16122 -15.03592 -14.47447 -14.33734 -14.03772 -13.94102 -13.33293 -13.22097 -12.78227 -12.46561 -12.37903 -12.13073 -11.99368 -11.77002 -11.54714 -11.32398 -11.09246 -10.58551 -10.42796 -10.29696 -9.48200 -9.44503 -9.23057 -9.13904 -8.99683 -8.63760 -8.10735 -8.03234 -6.52152 -3.96439 0.49611 0.86192 1.44540 2.54759 3.02307 3.08772 3.20436 3.24206 3.42436 3.56785 3.67366 3.91904 4.05395 4.18189 4.47490 4.79530 4.85157 5.09110 5.30208 5.41029 5.55871 5.83539 5.91223 5.93252 6.11738 6.38789 6.63497 6.68979 6.89018 7.36117 7.41512 7.80426 7.90759 8.23321 8.66520 8.92466 9.15233 9.66602 10.47060 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.006495 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.534471 B = 4309.907960 C = 4974.501471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.110 4.110 3 C 0.229 3.771 4 N -0.407 5.407 5 C -0.314 4.314 6 H 0.113 0.887 7 C 0.037 3.963 8 N -0.850 5.850 9 Si 0.923 3.077 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.490 3.510 14 O -0.573 6.573 15 C -0.152 4.152 16 C 0.231 3.769 17 C -0.118 4.118 18 N -0.512 5.512 19 C 0.487 3.513 20 O -0.457 6.457 21 N -0.497 5.497 22 C 0.191 3.809 23 S -0.078 6.078 24 H 0.201 0.799 25 H 0.118 0.882 26 H 0.053 0.947 27 H 0.272 0.728 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.410 0.590 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -4.689 6.727 8.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.111 4.111 3 C 0.106 3.894 4 N -0.122 5.122 5 C -0.441 4.441 6 H 0.130 0.870 7 C -0.169 4.169 8 N -0.487 5.487 9 Si 0.749 3.251 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.276 3.724 14 O -0.459 6.459 15 C -0.164 4.164 16 C 0.081 3.919 17 C -0.175 4.175 18 N -0.237 5.237 19 C 0.179 3.821 20 O -0.260 6.260 21 N -0.224 5.224 22 C -0.067 4.067 23 S 0.078 5.922 24 H 0.219 0.781 25 H 0.136 0.864 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.269 0.731 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.065 -4.532 7.274 8.571 hybrid contribution -0.528 0.632 -0.701 1.082 sum -0.463 -3.900 6.573 7.657 Atomic orbital electron populations 1.24235 0.95312 1.01609 1.06328 1.23007 0.94143 0.98629 0.95369 1.18347 0.84556 0.84967 1.01505 1.43590 1.53526 1.10226 1.04826 1.19748 1.36801 1.06623 0.80947 0.86955 1.25307 0.94966 0.96902 0.99733 1.70123 1.21186 1.28817 1.28574 0.85977 0.79256 0.79501 0.80371 1.20019 1.21072 1.19197 1.16828 0.87327 0.86331 0.81927 1.90681 1.52182 1.17067 1.85937 1.22472 0.94999 0.98530 1.00442 1.21799 0.92996 0.89658 0.87398 1.21091 0.95202 1.00197 1.00997 1.67754 1.34575 1.10883 1.10521 1.20313 0.84502 0.91445 0.85800 1.84674 1.86855 1.32482 1.21976 1.68435 1.21892 1.21680 1.10372 1.22997 0.98188 0.93884 0.91610 1.87044 1.04755 1.40906 1.59511 0.78150 0.86447 0.92868 0.91724 0.87825 0.89806 0.88919 0.73139 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.81 17.26 29.55 0.51 -4.30 16 2 C -0.11 -2.29 10.69 -37.12 -0.40 -2.68 16 3 C 0.23 4.89 4.98 -6.83 -0.03 4.86 16 4 N -0.41 -9.53 2.58 -119.27 -0.31 -9.84 16 5 C -0.31 -7.94 9.41 -14.99 -0.14 -8.09 16 6 H 0.11 3.01 7.31 -52.49 -0.38 2.62 16 7 C 0.04 0.88 4.88 -17.45 -0.09 0.80 16 8 N -0.85 -20.36 9.19 55.50 0.51 -19.85 16 9 Si 0.92 19.05 29.62 -169.99 -5.04 14.01 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.49 11.29 4.74 -12.66 -0.06 11.23 16 14 O -0.57 -14.99 16.70 5.22 0.09 -14.90 16 15 C -0.15 -3.07 3.96 -104.51 -0.41 -3.48 16 16 C 0.23 4.28 6.86 -81.86 -0.56 3.72 16 17 C -0.12 -1.99 9.68 36.01 0.35 -1.64 16 18 N -0.51 -8.94 10.38 -10.66 -0.11 -9.05 16 19 C 0.49 8.12 8.69 -91.08 -0.79 7.33 16 20 O -0.46 -6.07 13.63 -17.60 -0.24 -6.31 16 21 N -0.50 -8.79 10.45 -13.11 -0.14 -8.93 16 22 C 0.19 3.57 6.71 -15.92 -0.11 3.46 16 23 S -0.08 -1.34 25.14 -107.50 -2.70 -4.04 16 24 H 0.20 3.02 7.80 -54.08 -0.42 2.60 16 25 H 0.12 2.62 6.34 -51.93 -0.33 2.29 16 26 H 0.05 1.05 6.56 -51.93 -0.34 0.71 16 27 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 28 H 0.10 1.74 5.18 -51.92 -0.27 1.48 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.73 7.17 -51.93 -0.37 1.36 16 31 H 0.41 3.14 9.06 45.56 0.41 3.55 16 32 H 0.12 1.83 9.55 96.90 0.93 2.76 16 LS Contribution 302.29 15.07 4.56 4.56 Total: -1.00 -29.53 302.29 -5.45 -34.98 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -0.34 Total: 8.17 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -1.73 Total: 11.21 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.05 Total: -47.68 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.15 Total: -21.21 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.04 Total: 14.01 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.70 Total: -4.04 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.53 -5.45 -34.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521553333.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.810 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds