Wall clock time and date at job start Tue Mar 31 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46992 * 179.48130 * 3 2 1 5 5 C 1.36942 * 119.99955 * 269.71533 * 4 3 2 6 6 H 1.07999 * 120.00263 * 189.27514 * 5 4 3 7 7 C 1.39000 * 119.99771 * 9.28516 * 5 4 3 8 8 N 1.31401 * 119.99835 * 25.04854 * 7 5 4 9 9 Si 1.86796 * 119.99745 * 205.05175 * 7 5 4 10 10 H 1.48504 * 109.47200 * 89.99501 * 9 7 5 11 11 H 1.48503 * 109.47076 * 209.99595 * 9 7 5 12 12 H 1.48497 * 109.47295 * 329.99785 * 9 7 5 13 13 C 1.34776 * 120.00490 * 89.71733 * 4 3 2 14 14 O 1.21662 * 120.00254 * 180.02562 * 13 4 3 15 15 C 1.47107 * 119.99585 * 359.72434 * 13 4 3 16 16 C 1.39924 * 120.95250 * 269.99878 * 15 13 4 17 17 C 1.50702 * 120.46365 * 359.97438 * 16 15 13 18 18 N 1.32065 * 119.06488 * 179.97438 * 16 15 13 19 19 C 1.32594 * 121.16735 * 359.97438 * 18 16 15 20 20 O 1.35302 * 118.94412 * 180.02562 * 19 18 16 21 21 N 1.32239 * 122.11071 * 0.02562 * 19 18 16 22 22 C 1.32927 * 120.79665 * 359.72132 * 21 19 18 23 23 S 1.76195 * 120.62253 * 180.26437 * 22 21 19 24 24 H 4.40643 * 5.51453 * 180.02562 * 4 1 2 25 25 H 1.08995 * 109.46915 * 59.47634 * 3 2 1 26 26 H 1.09002 * 109.46560 * 299.47731 * 3 2 1 27 27 H 0.96999 * 119.99667 * 180.02562 * 8 7 5 28 28 H 1.09008 * 109.46630 * 90.00561 * 17 16 15 29 29 H 1.08997 * 109.46959 * 209.99960 * 17 16 15 30 30 H 1.08992 * 109.47691 * 330.00385 * 17 16 15 31 31 H 0.96703 * 113.99630 * 90.00786 * 20 19 18 32 32 H 1.40998 * 100.00303 * 270.26467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3820 -0.0125 5 6 3.3672 2.0149 -1.2042 6 1 3.8654 2.9730 -1.2183 7 6 2.9628 1.4242 -2.3957 8 7 1.9695 0.5641 -2.3986 9 14 3.8317 1.8532 -3.9927 10 1 4.9676 0.9203 -4.2044 11 1 2.8763 1.7344 -5.1234 12 1 4.3420 3.2458 -3.9201 13 6 3.3526 2.0300 1.1488 14 8 3.7572 3.1773 1.1384 15 6 3.0961 1.3521 2.4289 16 6 1.8408 1.4246 3.0427 17 6 0.7207 2.2029 2.4018 18 7 1.6514 0.8013 4.1915 19 6 2.6269 0.1122 4.7674 20 8 2.3832 -0.5094 5.9441 21 7 3.8304 0.0130 4.2284 22 6 4.1085 0.6042 3.0707 23 16 5.7116 0.4633 2.3533 24 1 -1.0502 -0.0004 0.0002 25 1 3.0096 -0.5211 -0.8852 26 1 3.0095 -0.5049 0.8947 27 1 1.6875 0.1517 -3.2301 28 1 0.1542 1.5469 1.7408 29 1 0.0616 2.5955 3.1762 30 1 1.1360 3.0292 1.8250 31 1 2.0575 -1.4152 5.8504 32 1 6.3409 1.5811 2.9385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521553333.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:21 Heat of formation + Delta-G solvation = 41.219383 kcal Electronic energy + Delta-G solvation = -21526.021202 eV Core-core repulsion = 18194.887508 eV Total energy + Delta-G solvation = -3331.133694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.54985 -40.43895 -38.46933 -37.13381 -35.78979 -34.16103 -33.16529 -32.88500 -30.06227 -28.30558 -27.12701 -25.63859 -24.45019 -21.72801 -20.43653 -19.81759 -19.51553 -18.74449 -18.51630 -18.09857 -17.52568 -16.83504 -16.10117 -15.71017 -15.67476 -15.32639 -14.95655 -14.72478 -14.20128 -14.06743 -13.95592 -13.58425 -13.49946 -13.24872 -13.00134 -12.79641 -12.64866 -12.40853 -12.11818 -11.67220 -11.21137 -11.06249 -10.72194 -10.69966 -10.54540 -10.31402 -9.92109 -9.39726 -8.35191 -5.87302 -0.91866 -0.53451 0.05197 1.23672 1.35181 1.50213 1.59317 1.72526 1.83853 2.04638 2.20024 2.34045 2.39396 2.77899 2.88257 3.05599 3.28329 3.66971 3.82118 3.90663 4.08438 4.49467 4.52030 4.56174 4.61966 4.93100 5.04055 5.31712 5.41185 5.50736 5.96618 6.38370 6.39531 6.52117 7.07736 7.13319 7.32863 7.86501 8.62144 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.006495 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.534471 B = 4309.907960 C = 4974.501471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.154 4.154 3 C 0.237 3.763 4 N -0.410 5.410 5 C -0.348 4.348 6 H 0.086 0.914 7 C 0.014 3.986 8 N -0.856 5.856 9 Si 0.981 3.019 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.495 3.505 14 O -0.616 6.616 15 C -0.179 4.179 16 C 0.233 3.767 17 C -0.112 4.112 18 N -0.511 5.511 19 C 0.498 3.502 20 O -0.452 6.452 21 N -0.501 5.501 22 C 0.193 3.807 23 S -0.083 6.083 24 H 0.237 0.763 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.276 0.724 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.436 0.564 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 -5.847 7.270 9.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.156 4.156 3 C 0.115 3.885 4 N -0.124 5.124 5 C -0.475 4.475 6 H 0.104 0.896 7 C -0.191 4.191 8 N -0.491 5.491 9 Si 0.805 3.195 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.201 1.201 13 C 0.282 3.718 14 O -0.505 6.505 15 C -0.191 4.191 16 C 0.084 3.916 17 C -0.169 4.169 18 N -0.237 5.237 19 C 0.191 3.809 20 O -0.259 6.259 21 N -0.228 5.228 22 C -0.065 4.065 23 S 0.073 5.927 24 H 0.254 0.746 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.300 0.700 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.028 -5.757 7.834 9.776 hybrid contribution -0.257 0.930 -0.773 1.236 sum -1.285 -4.827 7.061 8.649 Atomic orbital electron populations 1.25069 0.96120 0.99401 1.04157 1.23084 0.94505 1.00644 0.97355 1.18206 0.85456 0.83662 1.01206 1.43653 1.53331 1.10933 1.04519 1.19615 1.38629 1.06722 0.82524 0.89579 1.25890 0.94984 0.96624 1.01621 1.70189 1.21018 1.28590 1.29344 0.85128 0.78448 0.78808 0.77149 1.19228 1.20316 1.20058 1.17093 0.86141 0.85824 0.82735 1.90631 1.53969 1.19018 1.86856 1.22187 0.96540 1.00660 0.99683 1.21959 0.92711 0.89374 0.87599 1.21056 0.95045 0.99264 1.01517 1.67869 1.34578 1.11181 1.10053 1.20563 0.84014 0.90502 0.85832 1.84645 1.86881 1.34374 1.19977 1.68545 1.22406 1.21845 1.10002 1.23067 0.98371 0.93232 0.91787 1.87001 1.04150 1.41508 1.60024 0.74634 0.87992 0.91829 0.91333 0.87591 0.86993 0.91329 0.69985 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.11 17.26 74.32 1.28 -6.83 16 2 C -0.15 -6.30 10.69 31.13 0.33 -5.97 16 3 C 0.24 10.20 4.98 84.58 0.42 10.63 16 4 N -0.41 -19.71 2.58 -649.48 -1.68 -21.39 16 5 C -0.35 -18.13 9.41 84.08 0.79 -17.34 16 6 H 0.09 4.85 7.31 -2.91 -0.02 4.83 16 7 C 0.01 0.69 4.88 84.94 0.41 1.11 16 8 N -0.86 -40.62 9.19 21.67 0.20 -40.42 16 9 Si 0.98 39.10 29.62 68.60 2.03 41.13 16 10 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 11 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 13 C 0.49 23.43 4.74 86.57 0.41 23.84 16 14 O -0.62 -33.58 16.70 -4.23 -0.07 -33.65 16 15 C -0.18 -7.20 3.96 -19.79 -0.08 -7.27 16 16 C 0.23 8.42 6.86 42.93 0.29 8.71 16 17 C -0.11 -3.67 9.68 71.24 0.69 -2.98 16 18 N -0.51 -16.81 10.38 -300.55 -3.12 -19.93 16 19 C 0.50 15.48 8.69 180.51 1.57 17.04 16 20 O -0.45 -10.57 13.63 -85.88 -1.17 -11.74 16 21 N -0.50 -16.93 10.45 -308.46 -3.22 -20.15 16 22 C 0.19 7.13 6.71 85.28 0.57 7.70 16 23 S -0.08 -2.81 25.14 -56.49 -1.42 -4.23 16 24 H 0.24 6.24 7.80 -4.41 -0.03 6.20 16 25 H 0.10 4.62 6.34 -2.39 -0.02 4.61 16 26 H 0.06 2.53 6.56 -2.39 -0.02 2.52 16 27 H 0.28 12.40 8.31 -92.71 -0.77 11.63 16 28 H 0.11 3.42 5.18 -2.38 -0.01 3.41 16 29 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.07 2.60 7.17 -2.39 -0.02 2.59 16 31 H 0.44 5.10 9.06 -74.05 -0.67 4.43 16 32 H 0.13 4.09 9.55 73.80 0.70 4.79 16 Total: -1.00 -63.49 302.29 -0.50 -63.99 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.25 Total: 17.77 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 6.70 Total: 28.63 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -7.82 Total: -101.89 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.24 Total: -45.39 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -1.42 Total: -4.23 kcal Total: -63.49 -0.50 -63.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521553333.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.205 kcal (2) G-P(sol) polarization free energy of solvation -63.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds