Wall clock time and date at job start Tue Mar 31 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47190 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47497 * 256.96131 * 3 2 1 5 5 C 1.35895 * 117.00389 * 180.02562 * 4 3 2 6 6 C 1.38794 * 120.02484 * 0.02562 * 5 4 3 7 7 C 1.38162 * 120.05037 * 179.97438 * 6 5 4 8 8 C 1.38192 * 120.10917 * 359.74748 * 7 6 5 9 9 C 1.38753 * 120.05582 * 0.50466 * 8 7 6 10 10 O 1.35922 * 120.02726 * 179.77219 * 9 8 7 11 11 C 1.34266 * 116.99899 * 248.72597 * 10 9 8 12 12 O 1.20821 * 120.00191 * 5.77052 * 11 10 9 13 13 C 1.50702 * 119.99689 * 185.77667 * 11 10 9 14 14 S 1.81001 * 109.46730 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99721 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00571 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99862 * 179.97438 * 15 14 13 18 18 N 1.31633 * 120.00009 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99878 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46969 * 90.00150 * 19 17 15 21 21 H 1.48496 * 109.46986 * 209.99817 * 19 17 15 22 22 H 1.48501 * 109.47331 * 329.99925 * 19 17 15 23 23 C 1.38608 * 120.02626 * 180.02562 * 5 4 3 24 24 H 1.09006 * 109.47188 * 136.96418 * 3 2 1 25 25 H 1.09003 * 109.47683 * 16.96431 * 3 2 1 26 26 H 1.08001 * 119.97489 * 359.97438 * 6 5 4 27 27 H 1.07998 * 119.94160 * 179.97438 * 7 6 5 28 28 H 1.08004 * 119.97316 * 180.27577 * 8 7 6 29 29 H 1.09000 * 109.47108 * 299.99153 * 13 11 10 30 30 H 1.08998 * 109.47670 * 59.99969 * 13 11 10 31 31 H 0.96990 * 119.99928 * 179.97438 * 18 17 15 32 32 H 1.08000 * 120.05636 * 0.04190 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0842 0.3048 1.3125 5 6 4.4315 0.3461 1.4859 6 6 5.2775 0.0993 0.4137 7 6 6.6473 0.1417 0.5892 8 6 7.1784 0.4349 1.8308 9 6 6.3367 0.6772 2.9070 10 8 6.8597 0.9610 4.1291 11 6 6.6999 0.0370 5.0900 12 8 6.2061 -1.0329 4.8232 13 6 7.1365 0.3345 6.5014 14 16 6.7907 -1.0967 7.5541 15 6 7.3833 -0.4906 9.0988 16 1 7.8022 0.5027 9.1644 17 6 7.3117 -1.2898 10.2315 18 7 7.7549 -0.8372 11.3854 19 14 6.5865 -3.0075 10.1183 20 1 7.6638 -3.9799 9.8036 21 1 5.9592 -3.3664 11.4155 22 1 5.5600 -3.0418 9.0457 23 6 4.9617 0.6348 2.7336 24 1 2.9710 0.7520 -0.7014 25 1 2.9718 -0.9821 -0.2998 26 1 4.8648 -0.1261 -0.5586 27 1 7.3040 -0.0511 -0.2462 28 1 8.2495 0.4718 1.9646 29 1 8.2058 0.5453 6.5141 30 1 6.5909 1.2006 6.8757 31 1 7.7046 -1.3955 12.1769 32 1 4.3050 0.8265 3.5693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525863091.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:15 Heat of formation + Delta-G solvation = -48.181134 kcal Electronic energy + Delta-G solvation = -19271.094618 eV Core-core repulsion = 15903.791475 eV Total energy + Delta-G solvation = -3367.303142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37708 -40.29055 -37.99730 -36.90503 -36.30968 -32.53003 -31.43314 -30.74883 -29.37136 -28.83873 -25.73526 -23.83501 -22.88801 -21.26675 -18.99044 -18.76014 -18.02624 -17.18355 -16.81119 -16.74806 -16.41057 -16.22083 -15.20146 -15.04956 -14.39584 -14.15214 -14.05040 -13.96345 -13.47153 -13.42247 -12.95333 -12.89829 -12.79898 -12.50332 -12.14673 -11.70220 -11.53567 -11.36811 -11.08833 -11.04490 -10.79840 -10.40058 -9.92020 -9.12638 -9.09110 -8.68534 -8.62576 -7.08144 -6.37106 -4.12366 0.75736 1.04943 1.60637 2.16925 2.30724 2.35712 2.88747 3.02110 3.26591 3.41049 3.42883 3.48002 3.59110 4.24365 4.26426 4.46753 4.48896 4.53016 4.62919 4.84018 4.90205 5.01647 5.11961 5.15687 5.55017 5.57726 5.79048 5.86038 5.99700 6.02703 6.17882 6.56135 6.83002 6.92800 7.85589 7.92656 8.34376 9.07668 10.71846 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.003127 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.273956 B = 8950.974354 C = 9827.346624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.209 3.791 3 C 0.160 3.840 4 O -0.306 6.306 5 C 0.144 3.856 6 C -0.210 4.210 7 C -0.064 4.064 8 C -0.150 4.150 9 C 0.135 3.865 10 O -0.295 6.295 11 C 0.477 3.523 12 O -0.466 6.466 13 C -0.098 4.098 14 S -0.136 6.136 15 C -0.524 4.524 16 H 0.093 0.907 17 C 0.098 3.902 18 N -0.875 5.875 19 Si 0.856 3.144 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.236 1.236 23 C -0.152 4.152 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.272 0.728 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 3.554 -24.933 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.110 4.110 3 C 0.082 3.918 4 O -0.219 6.219 5 C 0.099 3.901 6 C -0.229 4.229 7 C -0.082 4.082 8 C -0.169 4.169 9 C 0.093 3.907 10 O -0.211 6.211 11 C 0.318 3.682 12 O -0.348 6.348 13 C -0.246 4.246 14 S 0.090 5.910 15 C -0.671 4.671 16 H 0.111 0.889 17 C -0.111 4.111 18 N -0.511 5.511 19 Si 0.680 3.320 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.160 1.160 23 C -0.171 4.171 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.179 2.200 -24.924 25.552 hybrid contribution 0.821 0.446 0.425 1.026 sum -4.358 2.646 -24.499 25.024 Atomic orbital electron populations 1.81277 1.12415 1.08168 1.05381 1.28314 0.94203 0.93680 0.94821 1.19764 0.82119 1.04434 0.85500 1.86089 1.20031 1.86109 1.29621 1.18438 0.81021 0.96917 0.93724 1.21273 0.94475 1.08731 0.98399 1.20776 0.94315 0.96488 0.96654 1.21098 1.00572 1.02774 0.92443 1.18196 0.90513 0.97816 0.84168 1.84667 1.71894 1.46614 1.17970 1.23744 0.75806 0.81860 0.86780 1.90716 1.38864 1.23814 1.81452 1.23046 1.06333 1.06311 0.88892 1.84863 1.82572 1.18477 1.05120 1.22247 1.47516 1.05754 0.91595 0.88927 1.24693 0.93835 0.98497 0.94121 1.69925 1.44178 1.37573 0.99471 0.86758 0.81396 0.84234 0.79594 1.19080 1.19728 1.15959 1.20520 0.94359 1.05563 0.96696 0.87020 0.86985 0.84627 0.84542 0.84581 0.86759 0.86711 0.91752 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.39 18.54 42.15 0.78 -3.61 16 2 C 0.21 1.66 15.82 -20.76 -0.33 1.33 16 3 C 0.16 0.73 5.21 34.37 0.18 0.91 16 4 O -0.31 -2.77 10.09 -19.41 -0.20 -2.97 16 5 C 0.14 1.42 6.68 -39.24 -0.26 1.15 16 6 C -0.21 -1.48 9.04 -39.40 -0.36 -1.84 16 7 C -0.06 -0.49 10.04 -39.63 -0.40 -0.88 16 8 C -0.15 -1.56 9.98 -39.41 -0.39 -1.95 16 9 C 0.14 1.78 5.27 -39.24 -0.21 1.58 16 10 O -0.29 -4.39 10.04 -23.62 -0.24 -4.63 16 11 C 0.48 8.34 7.75 36.01 0.28 8.62 16 12 O -0.47 -9.39 15.27 -18.74 -0.29 -9.68 16 13 C -0.10 -1.82 6.27 36.01 0.23 -1.59 16 14 S -0.14 -3.29 18.55 -107.50 -1.99 -5.28 16 15 C -0.52 -14.53 10.04 30.94 0.31 -14.22 16 16 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 17 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 18 N -0.88 -25.75 13.97 55.49 0.78 -24.98 16 19 Si 0.86 21.06 27.74 -169.99 -4.71 16.35 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.24 -5.77 6.74 56.52 0.38 -5.38 16 23 C -0.15 -1.93 9.26 -39.29 -0.36 -2.29 16 24 H 0.11 0.15 7.66 -51.93 -0.40 -0.25 16 25 H 0.11 0.22 7.66 -51.93 -0.40 -0.18 16 26 H 0.14 0.41 6.29 -52.49 -0.33 0.08 16 27 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 28 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.11 1.94 8.14 -51.92 -0.42 1.52 16 30 H 0.11 1.96 8.14 -51.92 -0.42 1.54 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -34.25 314.42 -5.36 -39.61 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -2.82 Total: -3.05 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.41 Total: -6.50 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 1.56 Total: -28.59 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.72 Total: -17.27 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.35 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.99 Total: -5.28 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.25 -5.36 -39.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525863091.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.572 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds