Wall clock time and date at job start Tue Mar 31 2020 06:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47190 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47497 * 256.96131 * 3 2 1 5 5 C 1.35895 * 117.00389 * 180.02562 * 4 3 2 6 6 C 1.38794 * 120.02484 * 0.02562 * 5 4 3 7 7 C 1.38162 * 120.05037 * 179.97438 * 6 5 4 8 8 C 1.38192 * 120.10917 * 359.74748 * 7 6 5 9 9 C 1.38753 * 120.05582 * 0.50466 * 8 7 6 10 10 O 1.35922 * 120.02726 * 179.77219 * 9 8 7 11 11 C 1.34266 * 116.99899 * 248.72597 * 10 9 8 12 12 O 1.20821 * 120.00191 * 5.77052 * 11 10 9 13 13 C 1.50702 * 119.99689 * 185.77667 * 11 10 9 14 14 S 1.81001 * 109.46730 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99721 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00571 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99862 * 179.97438 * 15 14 13 18 18 N 1.31633 * 120.00009 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99878 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46969 * 90.00150 * 19 17 15 21 21 H 1.48496 * 109.46986 * 209.99817 * 19 17 15 22 22 H 1.48501 * 109.47331 * 329.99925 * 19 17 15 23 23 C 1.38608 * 120.02626 * 180.02562 * 5 4 3 24 24 H 1.09006 * 109.47188 * 136.96418 * 3 2 1 25 25 H 1.09003 * 109.47683 * 16.96431 * 3 2 1 26 26 H 1.08001 * 119.97489 * 359.97438 * 6 5 4 27 27 H 1.07998 * 119.94160 * 179.97438 * 7 6 5 28 28 H 1.08004 * 119.97316 * 180.27577 * 8 7 6 29 29 H 1.09000 * 109.47108 * 299.99153 * 13 11 10 30 30 H 1.08998 * 109.47670 * 59.99969 * 13 11 10 31 31 H 0.96990 * 119.99928 * 179.97438 * 18 17 15 32 32 H 1.08000 * 120.05636 * 0.04190 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0842 0.3048 1.3125 5 6 4.4315 0.3461 1.4859 6 6 5.2775 0.0993 0.4137 7 6 6.6473 0.1417 0.5892 8 6 7.1784 0.4349 1.8308 9 6 6.3367 0.6772 2.9070 10 8 6.8597 0.9610 4.1291 11 6 6.6999 0.0370 5.0900 12 8 6.2061 -1.0329 4.8232 13 6 7.1365 0.3345 6.5014 14 16 6.7907 -1.0967 7.5541 15 6 7.3833 -0.4906 9.0988 16 1 7.8022 0.5027 9.1644 17 6 7.3117 -1.2898 10.2315 18 7 7.7549 -0.8372 11.3854 19 14 6.5865 -3.0075 10.1183 20 1 7.6638 -3.9799 9.8036 21 1 5.9592 -3.3664 11.4155 22 1 5.5600 -3.0418 9.0457 23 6 4.9617 0.6348 2.7336 24 1 2.9710 0.7520 -0.7014 25 1 2.9718 -0.9821 -0.2998 26 1 4.8648 -0.1261 -0.5586 27 1 7.3040 -0.0511 -0.2462 28 1 8.2495 0.4718 1.9646 29 1 8.2058 0.5453 6.5141 30 1 6.5909 1.2006 6.8757 31 1 7.7046 -1.3955 12.1769 32 1 4.3050 0.8265 3.5693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525863091.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:14 Heat of formation + Delta-G solvation = -69.962770 kcal Electronic energy + Delta-G solvation = -19272.039140 eV Core-core repulsion = 15903.791475 eV Total energy + Delta-G solvation = -3368.247665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.46933 -41.04484 -38.93447 -37.79164 -37.20380 -34.69817 -32.23047 -31.80082 -30.43171 -29.36484 -27.90552 -24.82174 -23.62454 -22.29292 -20.10069 -19.79637 -19.36333 -18.34800 -17.77882 -17.51908 -17.24316 -17.10556 -17.07284 -16.21604 -16.04989 -15.13836 -14.93799 -14.80618 -14.71061 -14.51444 -14.22565 -13.99387 -13.59339 -13.44334 -13.31328 -13.04147 -12.93781 -12.81395 -12.47106 -12.17103 -11.89948 -11.86025 -11.70340 -11.19085 -10.65176 -9.90903 -9.32235 -9.08353 -8.53322 -6.27227 -0.07754 0.33769 0.80692 0.92068 1.04545 1.31205 1.38716 1.49295 1.60043 1.83533 2.22629 2.37055 2.59711 2.73326 2.84886 3.01411 3.64952 3.76840 4.04327 4.06881 4.13045 4.15365 4.26593 4.36483 4.38227 4.48600 4.68457 5.11992 5.18089 5.33389 5.41392 5.63864 5.69147 6.11253 6.21148 6.35781 6.64325 6.90611 8.58935 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.003127 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.273956 B = 8950.974354 C = 9827.346624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.235 3.765 3 C 0.153 3.847 4 O -0.332 6.332 5 C 0.143 3.857 6 C -0.188 4.188 7 C -0.055 4.055 8 C -0.159 4.159 9 C 0.092 3.908 10 O -0.288 6.288 11 C 0.487 3.513 12 O -0.497 6.497 13 C -0.088 4.088 14 S -0.160 6.160 15 C -0.531 4.531 16 H 0.067 0.933 17 C 0.048 3.952 18 N -0.914 5.914 19 Si 0.913 3.087 20 H -0.260 1.260 21 H -0.259 1.259 22 H -0.236 1.236 23 C -0.184 4.184 24 H 0.157 0.843 25 H 0.151 0.849 26 H 0.189 0.811 27 H 0.179 0.821 28 H 0.145 0.855 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.278 0.722 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 2.824 -28.624 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.083 4.083 3 C 0.076 3.924 4 O -0.245 6.245 5 C 0.098 3.902 6 C -0.206 4.206 7 C -0.072 4.072 8 C -0.177 4.177 9 C 0.051 3.949 10 O -0.204 6.204 11 C 0.330 3.670 12 O -0.382 6.382 13 C -0.236 4.236 14 S 0.067 5.933 15 C -0.679 4.679 16 H 0.085 0.915 17 C -0.158 4.158 18 N -0.551 5.551 19 Si 0.734 3.266 20 H -0.184 1.184 21 H -0.184 1.184 22 H -0.159 1.159 23 C -0.203 4.203 24 H 0.174 0.826 25 H 0.168 0.832 26 H 0.206 0.794 27 H 0.196 0.804 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.088 0.912 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.715 1.496 -28.631 29.055 hybrid contribution 0.687 0.805 1.348 1.714 sum -4.029 2.300 -27.282 27.674 Atomic orbital electron populations 1.81303 1.14667 1.10709 1.07458 1.28978 0.94894 0.91564 0.92827 1.20429 0.79665 1.07981 0.84307 1.86028 1.19780 1.86233 1.32445 1.18452 0.81707 0.96611 0.93435 1.21853 0.93905 1.05443 0.99419 1.21318 0.95270 0.94244 0.96400 1.21397 1.00888 1.02584 0.92860 1.18585 0.91338 1.01323 0.83676 1.84624 1.71555 1.45469 1.18730 1.23341 0.75036 0.81742 0.86909 1.90691 1.40352 1.25116 1.82057 1.22960 1.07787 1.03892 0.88976 1.84688 1.82628 1.21735 1.04282 1.22403 1.46986 1.04860 0.93626 0.91455 1.25545 0.94250 1.02180 0.93866 1.70006 1.45577 1.39241 1.00311 0.85896 0.80841 0.79818 0.80009 1.18407 1.18363 1.15948 1.20519 0.94154 1.07789 0.97833 0.82563 0.83223 0.79390 0.80371 0.83694 0.84976 0.85317 0.91230 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.11 18.54 20.00 0.37 -9.74 16 2 C 0.24 3.26 15.82 89.44 1.41 4.68 16 3 C 0.15 0.72 5.21 70.17 0.37 1.08 16 4 O -0.33 -5.19 10.09 -92.37 -0.93 -6.12 16 5 C 0.14 2.45 6.68 22.49 0.15 2.60 16 6 C -0.19 -1.64 9.04 22.38 0.20 -1.44 16 7 C -0.05 -0.56 10.04 22.24 0.22 -0.34 16 8 C -0.16 -2.91 9.98 22.38 0.22 -2.69 16 9 C 0.09 2.39 5.27 22.49 0.12 2.51 16 10 O -0.29 -8.65 10.04 4.54 0.05 -8.60 16 11 C 0.49 17.20 7.75 71.24 0.55 17.75 16 12 O -0.50 -20.28 15.27 21.98 0.34 -19.95 16 13 C -0.09 -3.28 6.27 71.24 0.45 -2.84 16 14 S -0.16 -7.76 18.55 -56.49 -1.05 -8.81 16 15 C -0.53 -30.08 10.04 67.96 0.68 -29.40 16 16 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 17 C 0.05 2.73 5.50 84.86 0.47 3.19 16 18 N -0.91 -54.70 13.97 21.65 0.30 -54.39 16 19 Si 0.91 43.69 27.74 68.60 1.90 45.59 16 20 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.24 -11.19 6.74 99.48 0.67 -10.52 16 23 C -0.18 -4.65 9.26 22.46 0.21 -4.44 16 24 H 0.16 -0.58 7.66 -2.38 -0.02 -0.60 16 25 H 0.15 -0.33 7.66 -2.39 -0.02 -0.35 16 26 H 0.19 -0.39 6.29 -2.91 -0.02 -0.41 16 27 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 28 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.13 4.46 8.14 -2.39 -0.02 4.44 16 30 H 0.13 4.44 8.14 -2.40 -0.02 4.42 16 31 H 0.28 15.38 8.31 -92.72 -0.77 14.61 16 32 H 0.11 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -79.42 314.42 7.16 -72.26 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: 1.13 Total: -0.90 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.05 Total: -9.34 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: 0.67 Total: -64.14 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.55 Total: -34.66 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.90 Total: 45.59 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.05 Total: -8.81 kcal Total: -79.42 7.16 -72.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525863091.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.299 kcal (2) G-P(sol) polarization free energy of solvation -79.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds