Wall clock time and date at job start Tue Mar 31 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.50703 * 109.46963 * 240.00174 * 2 1 3 5 5 H 1.07995 * 120.00009 * 240.00155 * 4 2 1 6 6 C 1.37878 * 119.99689 * 59.99881 * 4 2 1 7 7 N 1.31508 * 120.00541 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47227 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46982 * 119.99902 * 8 6 4 11 11 H 1.48494 * 109.47058 * 239.99930 * 8 6 4 12 12 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 13 13 C 1.34784 * 119.99864 * 274.99655 * 12 2 1 14 14 O 1.21646 * 119.99863 * 359.72401 * 13 12 2 15 15 C 1.47072 * 119.99904 * 179.72736 * 13 12 2 16 16 C 1.36058 * 127.14120 * 359.68152 * 15 13 12 17 17 O 1.33799 * 109.84909 * 179.88698 * 16 15 13 18 18 C 1.34929 * 111.35310 * 0.39948 * 17 16 15 19 19 C 1.38968 * 133.10130 * 179.78645 * 18 17 16 20 20 C 1.37825 * 119.99051 * 179.97438 * 19 18 17 21 21 C 1.38794 * 120.64450 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.91338 * 179.97438 * 21 20 19 23 23 C 1.37948 * 120.17146 * 359.97438 * 21 20 19 24 24 C 1.39114 * 119.61721 * 0.02562 * 23 21 20 25 25 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 26 26 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 28 28 H 0.96996 * 120.00555 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00740 * 94.72347 * 12 2 1 30 30 H 1.07994 * 125.07622 * 0.02562 * 16 15 13 31 31 H 1.07997 * 120.00519 * 359.97207 * 19 18 17 32 32 H 1.08002 * 119.68203 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.19048 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1453 -2.2876 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1464 -0.1873 -4.8166 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8626 1.1632 2.4105 15 6 2.6316 -0.7131 3.5594 16 6 2.9832 -2.0232 3.6655 17 8 3.3768 -2.2881 4.9165 18 6 3.3012 -1.1908 5.6981 19 6 3.5871 -0.9578 7.0379 20 6 3.4079 0.3001 7.5719 21 6 2.9422 1.3435 6.7839 22 17 2.7229 2.9202 7.4764 23 6 2.6532 1.1308 5.4519 24 6 2.8308 -0.1354 4.9036 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 0.7088 1.1615 -3.4843 29 1 2.2452 -1.6328 1.1536 30 1 2.9517 -2.7414 2.8596 31 1 3.9496 -1.7622 7.6607 32 1 3.6313 0.4756 8.6139 33 1 2.2912 1.9425 4.8384 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565695406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:09 Heat of formation + Delta-G solvation = -19.634837 kcal Electronic energy + Delta-G solvation = -20156.437796 eV Core-core repulsion = 16788.328807 eV Total energy + Delta-G solvation = -3368.108988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.69549 -38.72288 -38.32545 -36.37793 -34.85869 -33.08988 -32.34177 -30.44834 -29.89481 -28.49986 -25.31074 -23.95612 -23.31496 -22.45289 -20.73760 -19.51466 -18.15434 -17.60152 -16.54891 -16.40466 -16.19011 -15.37509 -15.20405 -14.52514 -14.36951 -14.07884 -13.95279 -13.37084 -13.15707 -12.87530 -12.72122 -12.40555 -11.78147 -11.51887 -11.38813 -11.14238 -11.02322 -10.96346 -10.81594 -10.37210 -10.28693 -10.20500 -9.29900 -9.09600 -8.70039 -8.61152 -8.43525 -7.98812 -6.16841 -4.26651 0.60249 0.94391 1.76219 1.95853 2.49915 3.20970 3.28782 3.30393 3.31120 3.86009 3.89779 4.24772 4.31313 4.58092 4.67055 4.92896 5.00021 5.07518 5.15879 5.45995 5.63852 5.75334 5.94198 6.01094 6.11755 6.26230 6.77966 6.82728 6.91333 7.09334 7.35949 7.49481 7.63633 7.85783 8.09343 8.55200 8.71733 9.00005 9.40917 10.89217 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.003505 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.541407 B = 7987.640529 C = 8790.285358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.701 5.701 13 C 0.570 3.430 14 O -0.545 6.545 15 C -0.208 4.208 16 C 0.058 3.942 17 O -0.183 6.183 18 C 0.049 3.951 19 C -0.094 4.094 20 C -0.088 4.088 21 C -0.053 4.053 22 Cl -0.065 7.065 23 C -0.045 4.045 24 C -0.082 4.082 25 H 0.091 0.909 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.386 0.614 30 H 0.221 0.779 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 -5.107 18.345 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.349 5.349 13 C 0.355 3.645 14 O -0.424 6.424 15 C -0.213 4.213 16 C -0.010 4.010 17 O -0.082 6.082 18 C 0.002 3.998 19 C -0.113 4.113 20 C -0.107 4.107 21 C -0.080 4.080 22 Cl -0.036 7.036 23 C -0.064 4.064 24 C -0.084 4.084 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.218 0.782 30 H 0.237 0.763 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.453 -4.228 18.358 19.358 hybrid contribution 0.302 -0.719 -1.025 1.288 sum 4.755 -4.947 17.333 18.641 Atomic orbital electron populations 1.22090 0.98268 0.99209 1.01055 1.18810 0.91130 0.94113 0.79602 0.93076 1.21225 1.32601 1.13317 0.90231 0.91969 1.24887 0.94755 0.94930 0.99088 1.69904 1.35757 1.22376 1.23884 0.86382 0.78609 0.79510 0.82525 1.19728 1.20851 1.20837 1.46427 1.64957 1.13219 1.10265 1.17104 0.78736 0.86583 0.82065 1.90752 1.51468 1.15290 1.84902 1.21417 1.10774 0.94140 0.94972 1.24565 0.95351 0.96473 0.84623 1.83850 1.70180 1.34710 1.19503 1.19630 1.02481 0.84579 0.93146 1.19779 1.03771 0.97571 0.90152 1.20746 0.99346 0.90418 1.00165 1.20673 1.06090 0.87499 0.93699 1.98371 1.95872 1.25031 1.84332 1.20597 0.96375 0.96581 0.92799 1.19336 1.02683 0.94032 0.92353 0.89013 0.95402 0.96553 0.92543 0.78169 0.76274 0.84009 0.83741 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.60 2.56 -69.08 -0.18 6.42 16 3 H 0.05 1.48 7.57 -51.93 -0.39 1.08 16 4 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.46 11.32 55.43 0.63 -23.84 16 8 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.70 -14.15 5.06 -56.12 -0.28 -14.44 16 13 C 0.57 11.54 7.77 -12.67 -0.10 11.44 16 14 O -0.54 -13.12 15.94 5.24 0.08 -13.03 16 15 C -0.21 -3.35 6.31 -103.25 -0.65 -4.00 16 16 C 0.06 0.70 11.52 29.95 0.34 1.04 16 17 O -0.18 -2.23 10.53 5.29 0.06 -2.17 16 18 C 0.05 0.63 7.39 -38.56 -0.28 0.34 16 19 C -0.09 -0.94 10.06 -39.46 -0.40 -1.34 16 20 C -0.09 -0.87 9.79 -39.53 -0.39 -1.25 16 21 C -0.05 -0.65 6.32 -39.48 -0.25 -0.90 16 22 Cl -0.06 -0.74 28.95 -51.86 -1.50 -2.24 16 23 C -0.04 -0.67 9.66 -39.36 -0.38 -1.05 16 24 C -0.08 -1.26 6.29 -104.98 -0.66 -1.92 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 6.39 7.47 -40.82 -0.30 6.08 16 30 H 0.22 1.75 7.41 -52.49 -0.39 1.37 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.15 2.48 7.54 -52.49 -0.40 2.08 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -31.07 308.11 -7.42 -38.48 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.03 Total: 4.34 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.99 Total: -6.93 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.34 Total: -38.27 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.14 Total: -15.21 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.07 -7.42 -38.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.850 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds