Wall clock time and date at job start Tue Mar 31 2020 06:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.50703 * 109.46963 * 240.00174 * 2 1 3 5 5 H 1.07995 * 120.00009 * 240.00155 * 4 2 1 6 6 C 1.37878 * 119.99689 * 59.99881 * 4 2 1 7 7 N 1.31508 * 120.00541 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47227 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46982 * 119.99902 * 8 6 4 11 11 H 1.48494 * 109.47058 * 239.99930 * 8 6 4 12 12 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 13 13 C 1.34784 * 119.99864 * 274.99655 * 12 2 1 14 14 O 1.21646 * 119.99863 * 359.72401 * 13 12 2 15 15 C 1.47072 * 119.99904 * 179.72736 * 13 12 2 16 16 C 1.36058 * 127.14120 * 359.68152 * 15 13 12 17 17 O 1.33799 * 109.84909 * 179.88698 * 16 15 13 18 18 C 1.34929 * 111.35310 * 0.39948 * 17 16 15 19 19 C 1.38968 * 133.10130 * 179.78645 * 18 17 16 20 20 C 1.37825 * 119.99051 * 179.97438 * 19 18 17 21 21 C 1.38794 * 120.64450 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.91338 * 179.97438 * 21 20 19 23 23 C 1.37948 * 120.17146 * 359.97438 * 21 20 19 24 24 C 1.39114 * 119.61721 * 0.02562 * 23 21 20 25 25 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 26 26 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 28 28 H 0.96996 * 120.00555 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00740 * 94.72347 * 12 2 1 30 30 H 1.07994 * 125.07622 * 0.02562 * 16 15 13 31 31 H 1.07997 * 120.00519 * 359.97207 * 19 18 17 32 32 H 1.08002 * 119.68203 * 179.97438 * 20 19 18 33 33 H 1.07996 * 120.19048 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1453 -2.2876 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1464 -0.1873 -4.8166 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8626 1.1632 2.4105 15 6 2.6316 -0.7131 3.5594 16 6 2.9832 -2.0232 3.6655 17 8 3.3768 -2.2881 4.9165 18 6 3.3012 -1.1908 5.6981 19 6 3.5871 -0.9578 7.0379 20 6 3.4079 0.3001 7.5719 21 6 2.9422 1.3435 6.7839 22 17 2.7229 2.9202 7.4764 23 6 2.6532 1.1308 5.4519 24 6 2.8308 -0.1354 4.9036 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 0.7088 1.1615 -3.4843 29 1 2.2452 -1.6328 1.1536 30 1 2.9517 -2.7414 2.8596 31 1 3.9496 -1.7622 7.6607 32 1 3.6313 0.4756 8.6139 33 1 2.2912 1.9425 4.8384 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565695406.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:08 Heat of formation + Delta-G solvation = -39.579042 kcal Electronic energy + Delta-G solvation = -20157.302642 eV Core-core repulsion = 16788.328807 eV Total energy + Delta-G solvation = -3368.973834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.70771 -40.38099 -39.26180 -37.31976 -36.73194 -34.55876 -33.88180 -31.56888 -31.13376 -30.00950 -27.35418 -25.20272 -24.47982 -23.41295 -22.43819 -21.09837 -19.48353 -18.58923 -18.12850 -17.42005 -17.25802 -17.07613 -16.79544 -15.95848 -15.66754 -15.48814 -15.12175 -14.64774 -14.48799 -14.31450 -13.87533 -13.73654 -13.61559 -12.99981 -12.90827 -12.75725 -12.48090 -12.32976 -12.29203 -12.11369 -11.90395 -11.31364 -11.10955 -10.98782 -10.61444 -9.87785 -9.64800 -9.38409 -8.17693 -6.35586 -0.37641 -0.01152 0.64243 1.01349 1.45993 1.46942 1.54196 1.58972 2.20804 2.30170 2.52451 2.54412 3.13522 3.28538 3.48498 3.70192 3.98482 4.14099 4.18500 4.26318 4.66585 4.75479 4.85958 4.90081 4.95385 5.06866 5.09018 5.10276 5.30023 5.41519 5.57451 5.65996 5.83360 5.89531 6.07360 6.71481 6.89366 7.30450 7.47682 8.89173 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.003505 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.541407 B = 7987.640529 C = 8790.285358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.080 0.920 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.256 1.256 10 H -0.279 1.279 11 H -0.286 1.286 12 N -0.694 5.694 13 C 0.570 3.430 14 O -0.598 6.598 15 C -0.261 4.261 16 C 0.109 3.891 17 O -0.170 6.170 18 C 0.040 3.960 19 C -0.072 4.072 20 C -0.081 4.081 21 C -0.048 4.048 22 Cl -0.062 7.062 23 C -0.082 4.082 24 C -0.108 4.108 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.008 0.992 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.265 0.735 31 H 0.186 0.814 32 H 0.183 0.817 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.268 -8.590 20.065 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.016 0.984 4 C -0.583 4.583 5 H 0.098 0.902 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.179 1.179 10 H -0.205 1.205 11 H -0.212 1.212 12 N -0.343 5.343 13 C 0.359 3.641 14 O -0.481 6.481 15 C -0.266 4.266 16 C 0.041 3.959 17 O -0.069 6.069 18 C -0.007 4.007 19 C -0.091 4.091 20 C -0.099 4.099 21 C -0.075 4.075 22 Cl -0.033 7.033 23 C -0.101 4.101 24 C -0.110 4.110 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.280 0.720 31 H 0.203 0.797 32 H 0.200 0.800 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.055 -7.758 20.115 22.393 hybrid contribution -0.171 0.394 -1.437 1.500 sum 5.883 -7.364 18.678 20.922 Atomic orbital electron populations 1.21911 0.98214 0.99697 0.99478 1.18393 0.91169 0.92003 0.81647 0.98439 1.21567 1.32616 1.13678 0.90434 0.90238 1.25830 0.94841 0.95557 1.02449 1.70064 1.37057 1.24015 1.24590 0.85257 0.78049 0.78545 0.78234 1.17930 1.20524 1.21250 1.46062 1.65113 1.14028 1.09125 1.17641 0.77438 0.86066 0.83003 1.90717 1.53720 1.17831 1.85832 1.21016 1.15533 0.96162 0.93869 1.25247 0.90344 0.95199 0.85128 1.83897 1.69512 1.34191 1.19272 1.19932 1.03051 0.83715 0.94015 1.20330 1.01148 0.98516 0.89057 1.21195 0.97792 0.89435 1.01489 1.20859 1.05292 0.88416 0.92951 1.98370 1.95823 1.25129 1.83961 1.20439 0.99435 0.96195 0.94063 1.19532 1.03753 0.94975 0.92703 0.91402 0.93646 0.97269 0.92567 0.75760 0.71960 0.79674 0.79959 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.02 2.56 44.25 0.11 14.14 16 3 H 0.00 -0.14 7.57 -2.39 -0.02 -0.16 16 4 C -0.54 -28.13 8.73 25.60 0.22 -27.91 16 5 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -52.53 11.32 21.45 0.24 -52.28 16 8 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 9 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.69 -28.43 5.06 -449.70 -2.27 -30.70 16 13 C 0.57 24.12 7.77 86.56 0.67 24.79 16 14 O -0.60 -31.28 15.94 -4.18 -0.07 -31.35 16 15 C -0.26 -8.39 6.31 -18.98 -0.12 -8.51 16 16 C 0.11 2.31 11.52 67.31 0.78 3.09 16 17 O -0.17 -3.51 10.53 -3.97 -0.04 -3.55 16 18 C 0.04 0.91 7.39 22.93 0.17 1.08 16 19 C -0.07 -1.14 10.06 22.35 0.22 -0.92 16 20 C -0.08 -1.33 9.79 22.31 0.22 -1.11 16 21 C -0.05 -1.16 6.32 22.33 0.14 -1.02 16 22 Cl -0.06 -1.39 28.95 -2.72 -0.08 -1.47 16 23 C -0.08 -2.59 9.66 22.41 0.22 -2.38 16 24 C -0.11 -3.34 6.29 -20.09 -0.13 -3.46 16 25 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 26 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.01 0.42 8.14 -2.38 -0.02 0.41 16 28 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.41 12.86 7.47 -92.71 -0.69 12.16 16 30 H 0.26 2.94 7.41 -2.91 -0.02 2.91 16 31 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.12 4.35 7.54 -2.91 -0.02 4.32 16 Total: -1.00 -73.32 308.11 3.91 -69.42 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.47 Total: 14.00 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 3.62 Total: -7.22 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.03 Total: -82.98 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.11 Total: -34.90 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -73.32 3.91 -69.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695406.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.838 kcal (2) G-P(sol) polarization free energy of solvation -73.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds