Wall clock time and date at job start Tue Mar 31 2020 06:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47443 * 2 1 4 4 C 1.50703 * 109.46979 * 240.00665 * 2 1 3 5 5 H 1.08005 * 119.99551 * 275.00099 * 4 2 1 6 6 C 1.37868 * 120.00466 * 95.00077 * 4 2 1 7 7 N 1.31512 * 120.00194 * 184.91737 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 N 1.46490 * 109.47380 * 120.00197 * 2 1 3 13 13 C 1.34776 * 120.00268 * 275.00307 * 12 2 1 14 14 O 1.21616 * 120.00067 * 359.97438 * 13 12 2 15 15 C 1.47343 * 120.00364 * 179.97438 * 13 12 2 16 16 C 1.39439 * 120.34950 * 359.97438 * 15 13 12 17 17 C 1.38160 * 120.10284 * 179.97438 * 16 15 13 18 18 C 1.38275 * 120.88537 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 119.86474 * 180.02562 * 18 17 16 20 20 C 1.38979 * 120.27502 * 0.02562 * 18 17 16 21 21 O 1.34898 * 133.33350 * 179.97438 * 20 18 17 22 22 C 1.34314 * 110.84845 * 179.97438 * 21 20 18 23 23 C 1.34285 * 110.07627 * 359.97438 * 22 21 20 24 24 C 1.40383 * 119.40782 * 359.70046 * 20 18 17 25 25 H 1.09007 * 109.46978 * 295.03916 * 1 2 3 26 26 H 1.08995 * 109.47334 * 175.03157 * 1 2 3 27 27 H 1.09001 * 109.47232 * 55.02816 * 1 2 3 28 28 H 0.97002 * 119.99993 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00104 * 94.99714 * 12 2 1 30 30 H 1.08001 * 119.95048 * 359.97438 * 16 15 13 31 31 H 1.08006 * 119.55957 * 180.02562 * 17 16 15 32 32 H 1.08004 * 124.96717 * 180.02562 * 22 21 20 33 33 H 1.08005 * 126.89831 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7058 -0.6130 -3.4623 8 14 2.3136 1.8792 -2.3174 9 1 3.5992 2.3949 -1.7821 10 1 2.1058 2.3993 -3.6927 11 1 1.1987 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1617 2.4117 15 6 2.6377 -0.7131 3.5602 16 6 2.9705 -2.0661 3.5061 17 6 3.4306 -2.7123 4.6372 18 6 3.5692 -2.0351 5.8347 19 17 4.1504 -2.8731 7.2395 20 6 3.2452 -0.6862 5.9184 21 8 3.2763 0.2128 6.9237 22 6 2.8582 1.4172 6.5012 23 6 2.5344 1.3620 5.1991 24 6 2.7820 -0.0163 4.7749 25 1 -0.3633 0.4350 0.9312 26 1 -0.3634 -1.0237 -0.0890 27 1 -0.3634 0.5890 -0.8421 28 1 2.9369 -0.1046 -4.2554 29 1 2.2490 -1.6318 1.1525 30 1 2.8685 -2.6097 2.5785 31 1 3.6863 -3.7604 4.5852 32 1 2.7926 2.3012 7.1182 33 1 2.1675 2.1729 4.5872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565695685.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:05 Heat of formation + Delta-G solvation = -15.021436 kcal Electronic energy + Delta-G solvation = -20450.732972 eV Core-core repulsion = 17082.824036 eV Total energy + Delta-G solvation = -3367.908936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.61468 -39.42336 -37.77668 -36.53478 -35.01272 -32.70638 -32.50879 -31.07046 -29.74425 -29.05213 -25.37699 -24.26771 -22.69173 -22.22723 -20.77068 -19.76593 -18.08186 -17.56567 -16.99601 -16.38643 -16.33967 -15.84018 -15.41811 -14.43532 -14.25786 -14.19413 -13.48893 -13.16476 -13.09655 -12.90633 -12.60434 -12.48974 -12.23742 -11.96716 -11.72996 -11.38716 -11.20979 -11.13866 -10.86303 -10.63164 -10.09674 -9.92719 -9.35655 -9.26331 -8.87985 -8.75493 -8.39622 -8.10550 -6.28273 -4.32718 0.30929 1.02902 1.80179 2.22509 2.53162 2.92722 3.23021 3.31142 3.37677 3.74928 3.88993 4.28298 4.33139 4.63004 4.67897 4.90195 4.96912 5.13595 5.27805 5.31054 5.63189 5.76452 5.90999 6.01594 6.23480 6.30081 6.32688 6.47200 6.62103 6.86849 6.87989 7.12425 7.29921 7.46083 8.05082 8.46377 8.70655 8.82617 9.33195 10.83257 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.004052 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.627693 B = 6908.761356 C = 7601.514283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.083 3.917 7 N -0.887 5.887 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.693 5.693 13 C 0.542 3.458 14 O -0.547 6.547 15 C -0.069 4.069 16 C -0.092 4.092 17 C -0.090 4.090 18 C -0.010 4.010 19 Cl -0.059 7.059 20 C 0.048 3.952 21 O -0.186 6.186 22 C 0.000 4.000 23 C -0.182 4.182 24 C -0.072 4.072 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.268 0.732 29 H 0.393 0.607 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.213 0.787 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -2.101 19.258 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.070 0.930 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.523 5.523 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.342 5.342 13 C 0.327 3.673 14 O -0.427 6.427 15 C -0.073 4.073 16 C -0.111 4.111 17 C -0.109 4.109 18 C -0.037 4.037 19 Cl -0.030 7.030 20 C 0.000 4.000 21 O -0.087 6.087 22 C -0.065 4.065 23 C -0.201 4.201 24 C -0.074 4.074 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.229 0.771 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.193 -1.383 19.419 19.504 hybrid contribution 0.178 0.500 -0.160 0.554 sum 1.371 -0.883 19.258 19.327 Atomic orbital electron populations 1.22220 0.98362 1.00713 0.99361 1.19187 0.91054 0.94411 0.82478 0.93017 1.20987 1.45511 0.95655 0.94884 0.90239 1.24929 0.93504 0.98661 0.95127 1.69875 1.44453 1.36261 1.01701 0.86899 0.79835 0.85801 0.77439 1.19804 1.21117 1.18445 1.46650 1.64023 1.13900 1.09607 1.18029 0.79135 0.86906 0.83188 1.90708 1.51462 1.15446 1.85088 1.19865 1.00435 0.93615 0.93336 1.21322 0.97824 0.93148 0.98837 1.20782 0.99863 1.00687 0.89545 1.19805 1.05675 0.87923 0.90308 1.98378 1.87022 1.77558 1.40088 1.19027 1.03698 0.90297 0.87018 1.84045 1.70963 1.17944 1.35791 1.24174 0.99868 0.86653 0.95803 1.22791 1.05994 0.96337 0.94939 1.19697 1.01130 0.94194 0.92356 0.95161 0.93309 0.92766 0.92158 0.77217 0.83400 0.83112 0.77066 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.47 37.16 0.35 -2.81 16 2 C 0.23 5.35 2.22 -69.09 -0.15 5.20 16 3 H 0.05 1.31 4.73 -51.93 -0.25 1.06 16 4 C -0.53 -13.92 9.05 -34.44 -0.31 -14.23 16 5 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -25.60 13.96 55.43 0.77 -24.82 16 8 Si 0.87 21.15 26.99 -169.99 -4.59 16.56 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.26 -6.19 6.82 56.52 0.39 -5.80 16 12 N -0.69 -13.62 5.02 -56.04 -0.28 -13.90 16 13 C 0.54 10.50 7.73 -12.56 -0.10 10.40 16 14 O -0.55 -12.14 14.80 5.26 0.08 -12.07 16 15 C -0.07 -1.10 5.89 -104.79 -0.62 -1.71 16 16 C -0.09 -1.15 9.54 -39.16 -0.37 -1.53 16 17 C -0.09 -0.99 9.77 -39.60 -0.39 -1.37 16 18 C -0.01 -0.12 6.33 -39.29 -0.25 -0.37 16 19 Cl -0.06 -0.65 28.95 -51.86 -1.50 -2.15 16 20 C 0.05 0.67 7.19 -38.50 -0.28 0.39 16 21 O -0.19 -2.39 10.58 4.02 0.04 -2.35 16 22 C 0.00 -0.01 11.97 29.34 0.35 0.35 16 23 C -0.18 -2.52 10.29 -37.73 -0.39 -2.91 16 24 C -0.07 -1.11 6.16 -104.88 -0.65 -1.75 16 25 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.39 6.63 6.63 -40.82 -0.27 6.36 16 30 H 0.15 1.55 6.40 -52.49 -0.34 1.22 16 31 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 32 H 0.21 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.17 2.47 7.23 -52.48 -0.38 2.09 16 LS Contribution 304.30 15.07 4.59 4.59 Total: -1.00 -31.49 304.30 -6.70 -38.19 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -2.92 Total: 4.14 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.89 Total: -8.19 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.49 Total: -38.73 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.12 Total: -14.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.56 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.49 -6.70 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695685.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.172 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds