Wall clock time and date at job start Tue Mar 31 2020 06:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47344 * 2 1 4 4 C 1.50703 * 109.47308 * 120.00226 * 2 1 3 5 5 H 1.08000 * 120.00051 * 119.99683 * 4 2 1 6 6 C 1.37877 * 119.99724 * 299.99965 * 4 2 1 7 7 N 1.31511 * 120.00117 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99818 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46918 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47102 * 119.99686 * 8 6 4 11 11 H 1.48499 * 109.47167 * 240.00030 * 8 6 4 12 12 N 1.46503 * 109.46917 * 240.00293 * 2 1 3 13 13 C 1.34774 * 120.00290 * 85.00362 * 12 2 1 14 14 O 1.21618 * 120.00016 * 359.97438 * 13 12 2 15 15 C 1.47344 * 120.00087 * 180.02562 * 13 12 2 16 16 C 1.39445 * 120.35239 * 359.96756 * 15 13 12 17 17 C 1.38158 * 120.10163 * 179.97438 * 16 15 13 18 18 C 1.38270 * 120.88238 * 0.29662 * 17 16 15 19 19 Cl 1.73609 * 119.85993 * 179.67124 * 18 17 16 20 20 C 1.38981 * 120.28271 * 359.45995 * 18 17 16 21 21 O 1.34894 * 133.33623 * 180.18994 * 20 18 17 22 22 C 1.34320 * 110.84410 * 180.28923 * 21 20 18 23 23 C 1.34281 * 110.07801 * 359.97438 * 22 21 20 24 24 C 1.40387 * 119.40112 * 0.50699 * 20 18 17 25 25 H 1.09002 * 109.47053 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47137 * 300.00060 * 1 2 3 27 27 H 1.09000 * 109.47248 * 59.99896 * 1 2 3 28 28 H 0.96998 * 120.00120 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00034 * 264.99593 * 12 2 1 30 30 H 1.08002 * 119.94280 * 0.03138 * 16 15 13 31 31 H 1.08004 * 119.55176 * 180.02562 * 17 16 15 32 32 H 1.07999 * 124.95641 * 180.02562 * 22 21 20 33 33 H 1.07999 * 126.89837 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1661 -1.5868 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8575 1.1617 -2.4119 15 6 2.6376 -0.7129 -3.5604 16 6 2.9714 -2.0657 -3.5061 17 6 3.4304 -2.7121 -4.6376 18 6 3.5721 -2.0339 -5.8341 19 17 4.1594 -2.8703 -7.2375 20 6 3.2424 -0.6864 -5.9193 21 8 3.2721 0.2121 -6.9249 22 6 2.8530 1.4163 -6.5024 23 6 2.5291 1.3610 -5.2004 24 6 2.7744 -0.0179 -4.7769 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 2.8701 -2.6092 -2.5783 31 1 3.6859 -3.7602 -4.5856 32 1 2.7856 2.2998 -7.1199 33 1 2.1615 2.1715 -4.5886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565695686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:07 Heat of formation + Delta-G solvation = -14.825483 kcal Electronic energy + Delta-G solvation = -20363.561154 eV Core-core repulsion = 16995.660714 eV Total energy + Delta-G solvation = -3367.900439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.57317 -39.31304 -37.71130 -36.49443 -34.90979 -32.68940 -32.52675 -30.75630 -29.64889 -28.50322 -25.31005 -24.21206 -22.65730 -22.19307 -20.85350 -19.63941 -17.98276 -17.48205 -16.86479 -16.30007 -16.18338 -15.56835 -15.31937 -14.46645 -14.23858 -14.15210 -13.43572 -13.11124 -13.04224 -12.85812 -12.56878 -12.17097 -11.97604 -11.79169 -11.49386 -11.19063 -11.12226 -10.99133 -10.78529 -10.34572 -10.28337 -10.05430 -9.23373 -9.09138 -8.84525 -8.60774 -8.31156 -7.95640 -6.16759 -4.26355 0.35520 1.06142 1.82699 2.26959 2.56979 2.99564 3.21371 3.29331 3.31679 3.85802 3.97677 4.31724 4.37415 4.67403 4.72787 4.96503 5.04194 5.16107 5.31727 5.34999 5.68310 5.79990 5.95326 6.06218 6.29341 6.37332 6.77869 6.90489 6.92610 7.09081 7.35583 7.49306 7.63886 7.85498 8.09227 8.54952 8.71217 8.98805 9.41173 10.89320 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.003736 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.050371 B = 7493.043957 C = 8332.716358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.698 5.698 13 C 0.541 3.459 14 O -0.542 6.542 15 C -0.066 4.066 16 C -0.095 4.095 17 C -0.090 4.090 18 C -0.011 4.011 19 Cl -0.061 7.061 20 C 0.048 3.952 21 O -0.187 6.187 22 C -0.002 4.002 23 C -0.180 4.180 24 C -0.072 4.072 25 H 0.027 0.973 26 H 0.091 0.909 27 H 0.015 0.985 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.213 0.787 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -5.430 -16.803 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.346 5.346 13 C 0.326 3.674 14 O -0.422 6.422 15 C -0.070 4.070 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.039 4.039 19 Cl -0.032 7.032 20 C 0.000 4.000 21 O -0.088 6.088 22 C -0.066 4.066 23 C -0.199 4.199 24 C -0.074 4.074 25 H 0.046 0.954 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.222 0.778 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.229 0.771 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.255 -4.598 -17.028 18.144 hybrid contribution 0.384 -0.873 0.876 1.295 sum 4.640 -5.471 -16.152 17.673 Atomic orbital electron populations 1.22083 0.98236 0.99247 1.01025 1.18819 0.91156 0.94087 0.79697 0.93106 1.21235 1.32558 1.13318 0.90235 0.91946 1.24883 0.94743 0.94932 0.99084 1.69906 1.35817 1.22404 1.23866 0.86383 0.78619 0.79537 0.82504 1.19693 1.20849 1.20838 1.46523 1.64184 1.13567 1.10315 1.17934 0.79392 0.86914 0.83118 1.90722 1.51114 1.15393 1.84939 1.19930 1.00012 0.93599 0.93446 1.21299 0.98163 0.93176 0.98774 1.20762 0.99943 1.00583 0.89603 1.19787 1.05819 0.87966 0.90287 1.98376 1.86847 1.77662 1.40287 1.19031 1.03556 0.90333 0.87079 1.84043 1.70988 1.17991 1.35767 1.24173 1.00026 0.86624 0.95801 1.22808 1.05805 0.96327 0.94946 1.19703 1.01138 0.94235 0.92341 0.95372 0.89008 0.96571 0.92564 0.77775 0.83548 0.83215 0.77060 0.80928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.57 2.56 -69.08 -0.18 6.39 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.84 8.73 -34.44 -0.30 -14.14 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.70 -14.26 5.02 -56.04 -0.28 -14.54 16 13 C 0.54 10.92 7.73 -12.56 -0.10 10.82 16 14 O -0.54 -12.66 14.80 5.26 0.08 -12.58 16 15 C -0.07 -1.08 5.89 -104.79 -0.62 -1.70 16 16 C -0.09 -1.21 9.54 -39.16 -0.37 -1.59 16 17 C -0.09 -1.00 9.77 -39.60 -0.39 -1.39 16 18 C -0.01 -0.14 6.33 -39.29 -0.25 -0.39 16 19 Cl -0.06 -0.67 28.95 -51.86 -1.50 -2.17 16 20 C 0.05 0.69 7.19 -38.50 -0.28 0.41 16 21 O -0.19 -2.45 10.58 4.02 0.04 -2.41 16 22 C 0.00 -0.02 11.97 29.34 0.35 0.33 16 23 C -0.18 -2.59 10.29 -37.73 -0.39 -2.97 16 24 C -0.07 -1.14 6.16 -104.88 -0.65 -1.79 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.39 6.70 6.58 -40.82 -0.27 6.44 16 30 H 0.15 1.56 6.40 -52.49 -0.34 1.22 16 31 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.21 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.17 2.59 7.23 -52.49 -0.38 2.21 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -30.80 304.55 -7.30 -38.10 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -2.92 Total: 5.19 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -2.91 Total: -7.59 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.35 Total: -38.33 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.12 Total: -14.99 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.80 -7.30 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.272 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds