Wall clock time and date at job start Tue Mar 31 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47344 * 2 1 4 4 C 1.50703 * 109.47308 * 120.00226 * 2 1 3 5 5 H 1.08000 * 120.00051 * 119.99683 * 4 2 1 6 6 C 1.37877 * 119.99724 * 299.99965 * 4 2 1 7 7 N 1.31511 * 120.00117 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99818 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46918 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47102 * 119.99686 * 8 6 4 11 11 H 1.48499 * 109.47167 * 240.00030 * 8 6 4 12 12 N 1.46503 * 109.46917 * 240.00293 * 2 1 3 13 13 C 1.34774 * 120.00290 * 85.00362 * 12 2 1 14 14 O 1.21618 * 120.00016 * 359.97438 * 13 12 2 15 15 C 1.47344 * 120.00087 * 180.02562 * 13 12 2 16 16 C 1.39445 * 120.35239 * 359.96756 * 15 13 12 17 17 C 1.38158 * 120.10163 * 179.97438 * 16 15 13 18 18 C 1.38270 * 120.88238 * 0.29662 * 17 16 15 19 19 Cl 1.73609 * 119.85993 * 179.67124 * 18 17 16 20 20 C 1.38981 * 120.28271 * 359.45995 * 18 17 16 21 21 O 1.34894 * 133.33623 * 180.18994 * 20 18 17 22 22 C 1.34320 * 110.84410 * 180.28923 * 21 20 18 23 23 C 1.34281 * 110.07801 * 359.97438 * 22 21 20 24 24 C 1.40387 * 119.40112 * 0.50699 * 20 18 17 25 25 H 1.09002 * 109.47053 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47137 * 300.00060 * 1 2 3 27 27 H 1.09000 * 109.47248 * 59.99896 * 1 2 3 28 28 H 0.96998 * 120.00120 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00034 * 264.99593 * 12 2 1 30 30 H 1.08002 * 119.94280 * 0.03138 * 16 15 13 31 31 H 1.08004 * 119.55176 * 180.02562 * 17 16 15 32 32 H 1.07999 * 124.95641 * 180.02562 * 22 21 20 33 33 H 1.07999 * 126.89837 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1661 -1.5868 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8575 1.1617 -2.4119 15 6 2.6376 -0.7129 -3.5604 16 6 2.9714 -2.0657 -3.5061 17 6 3.4304 -2.7121 -4.6376 18 6 3.5721 -2.0339 -5.8341 19 17 4.1594 -2.8703 -7.2375 20 6 3.2424 -0.6864 -5.9193 21 8 3.2721 0.2121 -6.9249 22 6 2.8530 1.4163 -6.5024 23 6 2.5291 1.3610 -5.2004 24 6 2.7744 -0.0179 -4.7769 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 2.8701 -2.6092 -2.5783 31 1 3.6859 -3.7602 -4.5856 32 1 2.7856 2.2998 -7.1199 33 1 2.1615 2.1715 -4.5886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565695686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:06 Heat of formation + Delta-G solvation = -34.113196 kcal Electronic energy + Delta-G solvation = -20364.397532 eV Core-core repulsion = 16995.660714 eV Total energy + Delta-G solvation = -3368.736817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.59568 -40.80374 -38.84855 -37.50528 -36.75434 -34.42667 -33.68728 -32.14178 -30.73493 -30.11752 -27.34859 -25.43085 -23.87456 -23.31085 -22.37330 -21.28326 -19.41943 -18.50632 -18.15506 -17.64660 -17.33323 -17.14224 -16.74812 -16.13636 -15.81952 -15.27664 -14.94010 -14.47193 -14.23450 -14.07091 -13.87218 -13.73615 -13.26480 -13.02830 -12.98209 -12.92305 -12.75309 -12.52564 -12.27987 -12.11333 -12.09049 -11.10494 -11.07206 -10.87667 -10.60411 -9.91345 -9.81033 -9.26103 -8.17532 -6.35132 -0.73881 0.04991 0.85743 1.26831 1.46028 1.47226 1.59094 1.61411 1.71733 2.29019 2.51113 2.64732 3.13631 3.46449 3.58973 3.69976 3.78834 4.03702 4.32285 4.40106 4.59777 4.74045 4.83200 4.89105 4.92974 5.04487 5.08123 5.30613 5.31065 5.42578 5.57832 5.66837 5.87974 5.90586 6.07946 6.71548 6.87513 7.29808 7.45852 8.89232 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.003736 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.050371 B = 7493.043957 C = 8332.716358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H 0.001 0.999 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.257 1.257 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.694 5.694 13 C 0.540 3.460 14 O -0.586 6.586 15 C -0.103 4.103 16 C -0.076 4.076 17 C -0.082 4.082 18 C -0.004 4.004 19 Cl -0.042 7.042 20 C 0.032 3.968 21 O -0.188 6.188 22 C 0.038 3.962 23 C -0.229 4.229 24 C -0.092 4.092 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.010 0.990 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.169 0.831 31 H 0.190 0.810 32 H 0.263 0.737 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 -8.066 -18.097 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.181 1.181 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.343 5.343 13 C 0.328 3.672 14 O -0.468 6.468 15 C -0.106 4.106 16 C -0.095 4.095 17 C -0.101 4.101 18 C -0.032 4.032 19 Cl -0.013 7.013 20 C -0.016 4.016 21 O -0.088 6.088 22 C -0.026 4.026 23 C -0.248 4.248 24 C -0.094 4.094 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.242 0.758 30 H 0.186 0.814 31 H 0.207 0.793 32 H 0.278 0.722 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.534 -7.282 -18.351 20.504 hybrid contribution 0.024 -0.032 1.119 1.120 sum 5.558 -7.314 -17.232 19.528 Atomic orbital electron populations 1.21905 0.98142 0.99636 0.99596 1.18411 0.91213 0.92050 0.81583 0.98149 1.21566 1.32635 1.13663 0.90565 0.90505 1.25800 0.94815 0.95554 1.02345 1.70058 1.37015 1.23949 1.24592 0.85276 0.78077 0.78554 0.78302 1.18107 1.21139 1.20463 1.46203 1.64511 1.14252 1.09348 1.18529 0.78214 0.86526 0.83949 1.90689 1.52898 1.17480 1.85734 1.19635 1.03859 0.95193 0.91912 1.21570 0.96011 0.91576 1.00324 1.21157 0.98591 1.02112 0.88200 1.20075 1.04251 0.87517 0.91339 1.98388 1.86444 1.77045 1.39398 1.19196 1.04581 0.91158 0.86686 1.84066 1.70824 1.18418 1.35540 1.24981 0.95805 0.86907 0.94913 1.22797 1.09348 0.96017 0.96633 1.19975 1.01377 0.95144 0.92880 0.93861 0.91310 0.97055 0.92538 0.75764 0.81377 0.79267 0.72186 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.27 13.96 2.56 44.24 0.11 14.08 16 3 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 4 C -0.55 -28.36 8.73 25.60 0.22 -28.14 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -52.14 11.32 21.45 0.24 -51.90 16 8 Si 0.97 41.20 29.54 68.60 2.03 43.22 16 9 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 10 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 12 N -0.69 -28.85 5.02 -449.45 -2.26 -31.11 16 13 C 0.54 22.67 7.73 86.64 0.67 23.34 16 14 O -0.59 -29.29 14.80 -4.09 -0.06 -29.35 16 15 C -0.10 -3.37 5.89 -19.97 -0.12 -3.49 16 16 C -0.08 -1.78 9.54 22.54 0.21 -1.56 16 17 C -0.08 -1.56 9.77 22.26 0.22 -1.34 16 18 C 0.00 -0.10 6.33 22.46 0.14 0.05 16 19 Cl -0.04 -0.79 28.95 -2.72 -0.08 -0.87 16 20 C 0.03 0.86 7.19 22.97 0.17 1.03 16 21 O -0.19 -4.57 10.58 -8.54 -0.09 -4.66 16 22 C 0.04 0.79 11.97 66.92 0.80 1.59 16 23 C -0.23 -6.78 10.29 23.47 0.24 -6.54 16 24 C -0.09 -2.93 6.16 -20.03 -0.12 -3.05 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 27 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.41 13.67 6.58 -92.71 -0.61 13.06 16 30 H 0.17 3.09 6.40 -2.91 -0.02 3.07 16 31 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.26 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.15 5.06 7.23 -2.91 -0.02 5.04 16 Total: -1.00 -70.34 304.55 4.01 -66.34 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.56 Total: 17.23 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 3.66 Total: -8.90 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -2.01 Total: -83.01 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.15 Total: -34.01 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -70.34 4.01 -66.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.225 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds