Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48503 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47100 * 299.99964 * 3 2 1 6 6 H 1.48501 * 109.47505 * 59.99511 * 3 2 1 7 7 C 1.37878 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99725 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47052 * 299.99871 * 9 7 2 11 11 O 1.42908 * 109.46997 * 59.99764 * 9 7 2 12 12 C 1.52999 * 109.46851 * 179.97438 * 9 7 2 13 13 S 1.81399 * 109.46928 * 180.02562 * 12 9 7 14 14 C 1.76205 * 103.00053 * 180.02562 * 13 12 9 15 15 C 1.39255 * 120.54268 * 0.02562 * 14 13 12 16 16 C 1.38528 * 118.43296 * 179.97438 * 15 14 13 17 17 C 1.38393 * 119.44704 * 0.02562 * 16 15 14 18 18 N 1.31719 * 121.07453 * 359.71751 * 17 16 15 19 19 C 1.32614 * 121.70024 * 0.57020 * 18 17 16 20 20 C 1.48314 * 119.78371 * 179.71288 * 19 18 17 21 21 N 1.34092 * 126.68046 * 179.75462 * 20 19 18 22 22 N 1.28982 * 107.26003 * 179.75066 * 21 20 19 23 23 N 1.28727 * 108.96319 * 0.36988 * 22 21 20 24 24 H 0.97001 * 125.33997 * 179.89269 * 23 22 21 25 25 N 1.28876 * 109.32702 * 359.61995 * 23 22 21 26 26 H 0.97001 * 119.99598 * 359.97438 * 1 2 3 27 27 H 0.96697 * 113.99824 * 59.99656 * 11 9 7 28 28 H 1.08997 * 109.47195 * 59.99902 * 12 9 7 29 29 H 1.09008 * 109.47318 * 299.99677 * 12 9 7 30 30 H 1.07999 * 120.78603 * 359.95624 * 15 14 13 31 31 H 1.08002 * 120.27491 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.46293 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2453 -3.6621 0.0005 13 16 1.3383 -5.2330 -0.0002 14 6 2.6270 -6.4348 0.0006 15 6 3.9625 -6.0403 0.0022 16 6 4.9401 -7.0217 0.0033 17 6 4.5664 -8.3542 0.0024 18 7 3.2966 -8.7043 0.0060 19 6 2.3250 -7.8018 -0.0006 20 6 0.9092 -8.2435 -0.0026 21 7 -0.1758 -7.4555 -0.0045 22 7 -1.2093 -8.2272 -0.0112 23 7 -0.8161 -9.4530 -0.0058 24 1 -1.3981 -10.2289 -0.0075 25 7 0.4722 -9.4877 -0.0036 26 1 -0.4849 0.8401 0.0004 27 1 0.9223 -2.5298 -1.9975 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6044 -0.8895 30 1 4.2298 -4.9939 0.0021 31 1 5.9852 -6.7492 0.0049 32 1 5.3284 -9.1196 0.0037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592681592.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = 114.879434 kcal Electronic energy + Delta-G solvation = -20077.915602 eV Core-core repulsion = 16782.268798 eV Total energy + Delta-G solvation = -3295.646803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.37500 -39.97563 -35.93990 -34.43438 -33.61233 -32.57940 -32.20575 -30.83860 -29.74767 -25.73859 -24.95287 -24.74953 -23.32178 -22.12915 -21.00549 -19.25712 -17.46656 -17.26053 -17.08836 -16.73619 -16.22765 -14.71933 -14.69519 -14.48463 -14.30998 -14.08280 -13.97015 -13.60779 -13.22900 -12.67859 -12.39845 -11.94496 -11.67355 -11.32306 -11.25386 -11.09193 -10.99028 -10.97671 -10.85437 -10.28554 -10.18490 -9.62263 -9.50507 -9.23850 -9.12533 -8.65539 -8.30347 -7.02090 -6.09313 -4.29919 0.53355 1.12642 1.24835 1.88677 2.26180 2.31563 2.90223 3.22365 3.31035 3.33269 3.54642 3.75240 4.07985 4.32519 4.75480 4.94059 4.97532 4.99864 5.17720 5.32240 5.41598 5.64162 5.71065 5.87623 5.88646 6.02090 6.22928 6.38180 6.47399 6.58026 7.54919 7.72709 7.78224 8.01049 8.24034 8.71508 9.28770 9.47489 10.94556 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.004265 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.117980 B = 6563.834051 C = 7798.436093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.081 3.919 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.572 4.572 8 H 0.059 0.941 9 C 0.249 3.751 10 H 0.067 0.933 11 O -0.555 6.555 12 C -0.159 4.159 13 S 0.007 5.993 14 C -0.106 4.106 15 C -0.100 4.100 16 C -0.130 4.130 17 C 0.076 3.924 18 N -0.436 5.436 19 C 0.192 3.808 20 C 0.220 3.780 21 N -0.231 5.231 22 N -0.051 5.051 23 N -0.234 5.234 24 H 0.473 0.527 25 N -0.269 5.269 26 H 0.262 0.738 27 H 0.347 0.653 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 -17.304 -0.240 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.611 4.611 8 H 0.077 0.923 9 C 0.189 3.811 10 H 0.084 0.916 11 O -0.358 6.358 12 C -0.308 4.308 13 S 0.259 5.741 14 C -0.225 4.225 15 C -0.133 4.133 16 C -0.153 4.153 17 C -0.088 4.088 18 N -0.146 5.146 19 C 0.044 3.956 20 C -0.060 4.060 21 N -0.105 5.105 22 N -0.046 5.046 23 N -0.079 5.079 24 H 0.327 0.673 25 N -0.122 5.122 26 H 0.072 0.928 27 H 0.190 0.810 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.844 -18.055 0.230 18.279 hybrid contribution 2.857 1.446 -0.334 3.219 sum 5.701 -16.609 -0.103 17.560 Atomic orbital electron populations 1.70093 1.05949 1.26643 1.46203 1.25037 0.94740 0.99193 0.93631 0.86554 0.80095 0.83544 0.77816 1.19674 1.20768 1.20761 1.21550 0.93170 0.90674 1.55745 0.92319 1.19134 0.87369 0.87535 0.87070 0.91567 1.86627 1.37934 1.96041 1.15162 1.25238 1.04383 0.96839 1.04355 1.87068 1.05443 0.95413 1.86199 1.23374 0.99902 0.98261 1.00937 1.21678 0.90844 1.01161 0.99611 1.22198 1.00658 0.93921 0.98524 1.22578 0.91900 0.95128 0.99171 1.67367 1.00593 1.36971 1.09643 1.17101 0.87019 0.87243 1.04194 1.23036 0.94605 0.84965 1.03429 1.76220 0.94168 1.24074 1.16045 1.79038 1.22275 0.88340 1.14912 1.47853 1.04241 1.09565 1.46262 0.67272 1.75064 0.93312 1.23304 1.20494 0.92777 0.80964 0.89890 0.90426 0.83679 0.84169 0.82112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.68 12.84 55.43 0.71 -23.97 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.57 -14.97 8.76 -34.44 -0.30 -15.27 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.25 6.06 2.88 -27.88 -0.08 5.98 16 10 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 11 O -0.56 -13.98 12.32 -35.23 -0.43 -14.42 16 12 C -0.16 -3.07 3.99 37.16 0.15 -2.92 16 13 S 0.01 0.12 18.61 -107.50 -2.00 -1.88 16 14 C -0.11 -1.70 6.16 -38.55 -0.24 -1.94 16 15 C -0.10 -1.34 9.46 -39.10 -0.37 -1.71 16 16 C -0.13 -1.39 10.10 -39.42 -0.40 -1.79 16 17 C 0.08 0.86 11.17 -17.54 -0.20 0.66 16 18 N -0.44 -6.39 10.28 -9.61 -0.10 -6.48 16 19 C 0.19 3.10 6.77 -82.73 -0.56 2.54 16 20 C 0.22 3.60 7.94 -156.28 -1.24 2.36 16 21 N -0.23 -3.98 9.68 32.14 0.31 -3.67 16 22 N -0.05 -0.73 13.47 60.35 0.81 0.09 16 23 N -0.23 -2.54 7.90 60.35 0.48 -2.06 16 24 H 0.47 2.51 8.96 -340.35 -3.05 -0.54 16 25 N -0.27 -3.75 12.39 32.15 0.40 -3.36 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.35 7.70 9.04 45.56 0.41 8.11 16 28 H 0.08 1.51 7.78 -51.93 -0.40 1.10 16 29 H 0.08 1.39 7.79 -51.92 -0.40 0.99 16 30 H 0.15 1.84 6.05 -52.49 -0.32 1.52 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 300.90 15.07 4.53 4.53 Total: -1.00 -33.45 300.90 -8.22 -41.66 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.57 Total: 4.09 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -3.33 Total: -9.98 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 2.61 Total: -39.45 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.43 Total: -14.42 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.00 Total: -1.88 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.45 -8.22 -41.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592681592.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.542 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds