Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48503 * 109.47356 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47100 * 299.99964 * 3 2 1 6 6 H 1.48501 * 109.47505 * 59.99511 * 3 2 1 7 7 C 1.37878 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99725 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47052 * 299.99871 * 9 7 2 11 11 O 1.42908 * 109.46997 * 59.99764 * 9 7 2 12 12 C 1.52999 * 109.46851 * 179.97438 * 9 7 2 13 13 S 1.81399 * 109.46928 * 180.02562 * 12 9 7 14 14 C 1.76205 * 103.00053 * 180.02562 * 13 12 9 15 15 C 1.39255 * 120.54268 * 0.02562 * 14 13 12 16 16 C 1.38528 * 118.43296 * 179.97438 * 15 14 13 17 17 C 1.38393 * 119.44704 * 0.02562 * 16 15 14 18 18 N 1.31719 * 121.07453 * 359.71751 * 17 16 15 19 19 C 1.32614 * 121.70024 * 0.57020 * 18 17 16 20 20 C 1.48314 * 119.78371 * 179.71288 * 19 18 17 21 21 N 1.34092 * 126.68046 * 179.75462 * 20 19 18 22 22 N 1.28982 * 107.26003 * 179.75066 * 21 20 19 23 23 N 1.28727 * 108.96319 * 0.36988 * 22 21 20 24 24 H 0.97001 * 125.33997 * 179.89269 * 23 22 21 25 25 N 1.28876 * 109.32702 * 359.61995 * 23 22 21 26 26 H 0.97001 * 119.99598 * 359.97438 * 1 2 3 27 27 H 0.96697 * 113.99824 * 59.99656 * 11 9 7 28 28 H 1.08997 * 109.47195 * 59.99902 * 12 9 7 29 29 H 1.09008 * 109.47318 * 299.99677 * 12 9 7 30 30 H 1.07999 * 120.78603 * 359.95624 * 15 14 13 31 31 H 1.08002 * 120.27491 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.46293 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2453 -3.6621 0.0005 13 16 1.3383 -5.2330 -0.0002 14 6 2.6270 -6.4348 0.0006 15 6 3.9625 -6.0403 0.0022 16 6 4.9401 -7.0217 0.0033 17 6 4.5664 -8.3542 0.0024 18 7 3.2966 -8.7043 0.0060 19 6 2.3250 -7.8018 -0.0006 20 6 0.9092 -8.2435 -0.0026 21 7 -0.1758 -7.4555 -0.0045 22 7 -1.2093 -8.2272 -0.0112 23 7 -0.8161 -9.4530 -0.0058 24 1 -1.3981 -10.2289 -0.0075 25 7 0.4722 -9.4877 -0.0036 26 1 -0.4849 0.8401 0.0004 27 1 0.9223 -2.5298 -1.9975 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6044 -0.8895 30 1 4.2298 -4.9939 0.0021 31 1 5.9852 -6.7492 0.0049 32 1 5.3284 -9.1196 0.0037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592681592.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = 88.585015 kcal Electronic energy + Delta-G solvation = -20079.055813 eV Core-core repulsion = 16782.268798 eV Total energy + Delta-G solvation = -3296.787015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.47680 -41.00014 -37.86576 -35.53900 -34.69935 -34.26118 -33.65231 -31.86562 -31.51661 -27.49004 -26.22112 -25.84705 -24.36260 -23.43094 -22.63471 -20.31171 -19.23469 -18.55258 -18.18612 -17.91940 -17.24534 -16.68244 -16.25091 -16.06082 -15.74427 -15.29970 -15.20349 -14.97443 -14.39205 -14.05928 -13.63709 -13.42050 -13.18960 -13.07644 -12.79247 -12.59939 -12.43743 -12.26666 -12.05762 -11.99931 -11.42887 -11.25669 -10.80062 -10.66215 -10.60806 -10.26368 -10.21224 -8.38209 -8.13611 -6.41145 -0.52199 0.11176 0.15639 0.55661 1.19370 1.39548 1.43101 1.44433 1.55900 1.57148 2.40809 2.48189 2.73638 2.99440 3.13142 3.78929 3.93159 3.96050 4.01456 4.13958 4.21695 4.33766 4.38325 4.43763 4.59263 4.87350 4.94242 5.09275 5.55648 5.56026 5.62414 5.68041 6.00112 6.69439 6.77812 7.12314 7.32277 7.51934 8.91217 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.004265 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.117980 B = 6563.834051 C = 7798.436093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.248 3.752 10 H 0.025 0.975 11 O -0.573 6.573 12 C -0.138 4.138 13 S -0.039 6.039 14 C -0.119 4.119 15 C -0.105 4.105 16 C -0.112 4.112 17 C 0.086 3.914 18 N -0.455 5.455 19 C 0.173 3.827 20 C 0.203 3.797 21 N -0.269 5.269 22 N -0.060 5.060 23 N -0.198 5.198 24 H 0.495 0.505 25 N -0.268 5.268 26 H 0.262 0.738 27 H 0.357 0.643 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.186 0.814 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.812 -18.532 -0.449 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.619 4.619 8 H 0.088 0.912 9 C 0.189 3.811 10 H 0.043 0.957 11 O -0.377 6.377 12 C -0.287 4.287 13 S 0.210 5.790 14 C -0.238 4.238 15 C -0.138 4.138 16 C -0.134 4.134 17 C -0.077 4.077 18 N -0.165 5.165 19 C 0.028 3.972 20 C -0.077 4.077 21 N -0.142 5.142 22 N -0.055 5.055 23 N -0.050 5.050 24 H 0.354 0.646 25 N -0.122 5.122 26 H 0.071 0.929 27 H 0.202 0.798 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.170 0.830 31 H 0.204 0.796 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.952 -19.317 0.020 20.214 hybrid contribution 1.974 1.561 -0.266 2.531 sum 7.925 -17.756 -0.246 19.446 Atomic orbital electron populations 1.70247 1.07867 1.27488 1.48078 1.25943 0.95448 1.03079 0.93245 0.85434 0.79299 0.78818 0.77548 1.18149 1.20672 1.20723 1.21972 0.93816 0.91571 1.54570 0.91182 1.18891 0.87367 0.89462 0.85426 0.95734 1.86570 1.38931 1.96260 1.15940 1.24762 1.02857 0.95675 1.05370 1.87210 1.07532 0.96104 1.88167 1.23208 0.99921 0.97266 1.03377 1.21938 0.90265 1.02375 0.99182 1.22678 1.02185 0.92851 0.95657 1.23440 0.91479 0.96715 0.96069 1.67458 1.01666 1.36767 1.10646 1.17212 0.87432 0.87481 1.05053 1.23284 0.94989 0.85410 1.04059 1.76174 0.94963 1.25402 1.17642 1.78953 1.21823 0.89235 1.15454 1.47886 1.03837 1.09659 1.43574 0.64554 1.75008 0.94213 1.22471 1.20471 0.92905 0.79753 0.89023 0.89022 0.83045 0.79632 0.77829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.51 12.84 21.45 0.28 -53.23 16 2 C 0.03 1.40 5.40 84.65 0.46 1.86 16 3 Si 0.96 42.05 29.54 68.60 2.03 44.08 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.58 -30.54 8.76 25.60 0.22 -30.32 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.25 12.48 2.88 29.85 0.09 12.57 16 10 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 11 O -0.57 -29.95 12.32 -148.98 -1.84 -31.78 16 12 C -0.14 -5.36 3.99 71.98 0.29 -5.07 16 13 S -0.04 -1.52 18.61 -56.49 -1.05 -2.57 16 14 C -0.12 -3.77 6.16 22.94 0.14 -3.63 16 15 C -0.11 -2.58 9.46 22.58 0.21 -2.37 16 16 C -0.11 -1.88 10.10 22.38 0.23 -1.66 16 17 C 0.09 1.59 11.17 84.75 0.95 2.53 16 18 N -0.46 -12.32 10.28 -184.31 -1.90 -14.22 16 19 C 0.17 5.51 6.77 42.14 0.29 5.80 16 20 C 0.20 6.68 7.94 137.31 1.09 7.77 16 21 N -0.27 -9.55 9.68 -52.24 -0.51 -10.05 16 22 N -0.06 -1.74 13.47 37.02 0.50 -1.24 16 23 N -0.20 -4.18 7.90 37.02 0.29 -3.89 16 24 H 0.50 4.61 8.96 -347.52 -3.12 1.49 16 25 N -0.27 -7.31 12.39 -52.19 -0.65 -7.96 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.36 16.36 9.04 -74.06 -0.67 15.69 16 28 H 0.09 3.31 7.78 -2.39 -0.02 3.30 16 29 H 0.09 3.23 7.79 -2.39 -0.02 3.22 16 30 H 0.15 3.47 6.05 -2.91 -0.02 3.45 16 31 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -75.33 300.90 -1.46 -76.79 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -2.58 Total: 16.59 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 3.96 Total: -12.52 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -1.98 Total: -90.59 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.84 Total: -31.78 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -1.05 Total: -2.57 kcal Total: -75.33 -1.46 -76.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592681592.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.374 kcal (2) G-P(sol) polarization free energy of solvation -75.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds