Wall clock time and date at job start Tue Mar 31 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99918 * 2 1 4 4 H 1.48502 * 109.46846 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47032 * 299.99873 * 3 2 1 6 6 H 1.48506 * 109.46956 * 60.00123 * 3 2 1 7 7 C 1.37877 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00030 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47354 * 60.00603 * 9 7 2 11 11 N 1.46907 * 109.47190 * 180.02562 * 9 7 2 12 12 C 1.46897 * 111.00173 * 205.00049 * 11 9 7 13 13 C 1.50700 * 109.47195 * 180.02562 * 12 11 9 14 14 C 1.35161 * 125.61063 * 89.99840 * 13 12 11 15 15 C 1.40315 * 107.12939 * 180.02562 * 14 13 12 16 16 C 1.36646 * 106.69970 * 359.97438 * 15 14 13 17 17 C 1.46461 * 125.99604 * 179.97438 * 16 15 14 18 18 O 1.21624 * 120.00080 * 0.02562 * 17 16 15 19 19 O 1.34898 * 120.00308 * 180.02562 * 17 16 15 20 20 O 1.33914 * 125.60613 * 270.00175 * 13 12 11 21 21 C 1.52995 * 109.47541 * 300.00038 * 9 7 2 22 22 F 1.39903 * 109.47424 * 300.00102 * 21 9 7 23 23 F 1.39900 * 109.46892 * 60.00082 * 21 9 7 24 24 F 1.39897 * 109.47942 * 180.02562 * 21 9 7 25 25 H 0.96997 * 120.00525 * 359.97438 * 1 2 3 26 26 H 1.00901 * 111.00034 * 81.04775 * 11 9 7 27 27 H 1.09004 * 109.47055 * 59.99741 * 12 11 9 28 28 H 1.09000 * 109.47469 * 299.99910 * 12 11 9 29 29 H 1.08003 * 126.43858 * 0.02562 * 14 13 12 30 30 H 1.07995 * 126.65238 * 179.73999 * 15 14 13 31 31 H 0.96695 * 117.00568 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 7 2.2057 -3.6157 -0.0005 12 6 1.6031 -4.8235 -0.5801 13 6 2.6095 -5.9451 -0.5625 14 6 2.7817 -6.8323 0.4425 15 6 3.8140 -7.7003 0.0552 16 6 4.2246 -7.2940 -1.1832 17 6 5.2870 -7.9088 -1.9824 18 8 5.8914 -8.8725 -1.5521 19 8 5.5950 -7.4061 -3.1957 20 8 3.4804 -6.2265 -1.5401 21 6 0.3719 -2.5805 1.2490 22 9 1.1765 -2.5067 2.3910 23 9 -0.5373 -1.5172 1.2495 24 9 -0.3272 -3.7923 1.2493 25 1 -0.4851 0.8400 0.0004 26 1 2.5521 -3.7953 0.9300 27 1 1.3013 -4.6217 -1.6079 28 1 0.7296 -5.1106 0.0053 29 1 2.2288 -6.8667 1.3696 30 1 4.2099 -8.5266 0.6267 31 1 6.3035 -7.8452 -3.6859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:22 Heat of formation + Delta-G solvation = -205.572595 kcal Electronic energy + Delta-G solvation = -23619.275363 eV Core-core repulsion = 19260.537603 eV Total energy + Delta-G solvation = -4358.737760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.65239 -46.32858 -45.78872 -42.74413 -40.04402 -36.34942 -36.15852 -33.29778 -32.86013 -30.85564 -28.23124 -25.43916 -24.47678 -23.14736 -21.58458 -21.11410 -20.52576 -18.59635 -17.78145 -17.41569 -16.95636 -16.91348 -16.56990 -16.39047 -15.33325 -15.04459 -14.78472 -14.03216 -13.80098 -13.74418 -13.30777 -13.19619 -13.01882 -12.94151 -12.75118 -12.54734 -12.40894 -12.14755 -11.99741 -11.83006 -11.54341 -11.15707 -11.05884 -10.78912 -10.66651 -10.22058 -10.09583 -9.67446 -8.72597 -8.64209 -7.90303 -6.21013 -4.38401 0.74819 2.18134 2.35344 2.79258 3.13819 3.20762 3.29084 3.34648 4.21999 4.26321 4.53659 4.80306 4.89707 4.91131 5.06779 5.39969 5.49368 5.51492 5.64092 5.73753 5.82492 5.90488 6.02167 6.14181 6.27268 6.56854 6.89978 7.33599 7.64185 7.69990 7.83315 7.90723 8.68946 9.27469 10.71617 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.004200 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.073557 B = 6664.331046 C = 7517.744590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.057 3.943 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.081 0.919 9 C 0.192 3.808 10 H 0.077 0.923 11 N -0.665 5.665 12 C 0.111 3.889 13 C 0.069 3.931 14 C -0.230 4.230 15 C -0.095 4.095 16 C -0.085 4.085 17 C 0.576 3.424 18 O -0.504 6.504 19 O -0.502 6.502 20 O -0.138 6.138 21 C 0.393 3.607 22 F -0.206 7.206 23 F -0.134 7.134 24 F -0.233 7.233 25 H 0.265 0.735 26 H 0.341 0.659 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -11.522 -1.792 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.099 0.901 9 C 0.082 3.918 10 H 0.094 0.906 11 N -0.296 5.296 12 C -0.018 4.018 13 C 0.015 3.985 14 C -0.249 4.249 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.421 3.579 18 O -0.394 6.394 19 O -0.314 6.314 20 O -0.033 6.033 21 C 0.336 3.664 22 F -0.188 7.188 23 F -0.115 7.115 24 F -0.215 7.215 25 H 0.075 0.925 26 H 0.160 0.840 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.178 0.822 30 H 0.180 0.820 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 3.958 -11.102 -2.338 12.016 hybrid contribution 0.037 0.163 0.909 0.925 sum 3.995 -10.939 -1.428 11.733 Atomic orbital electron populations 1.70363 1.05848 1.27024 1.45398 1.25150 0.95152 1.00214 0.94456 0.86179 0.80080 0.82048 0.77685 1.19320 1.20703 1.20800 1.20838 0.94255 0.87246 1.52978 0.90103 1.20507 0.89660 0.91364 0.90304 0.90554 1.60697 1.37456 1.03463 1.27947 1.20896 0.91056 0.86524 1.03327 1.23140 0.91592 0.97202 0.86614 1.21672 1.02917 0.98430 1.01923 1.21935 0.96041 1.00174 0.93294 1.20508 1.00639 0.95175 0.97222 1.18859 0.79892 0.79990 0.79123 1.90984 1.50706 1.26175 1.71552 1.84711 1.56504 1.59917 1.30243 1.84158 1.38711 1.39203 1.41188 1.24305 0.81199 0.72427 0.88419 1.93000 1.74224 1.96097 1.55513 1.93434 1.68427 1.53394 1.96226 1.92970 1.82130 1.49344 1.97068 0.92463 0.83962 0.88539 0.90262 0.82174 0.81970 0.72462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.65 9.50 55.43 0.53 -22.12 16 2 C 0.06 1.46 5.20 -17.82 -0.09 1.37 16 3 Si 0.91 20.30 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.11 8.58 -34.44 -0.30 -13.41 16 8 H 0.08 2.08 7.81 -52.48 -0.41 1.67 16 9 C 0.19 4.37 2.26 -68.87 -0.16 4.22 16 10 H 0.08 1.81 7.80 -51.93 -0.41 1.41 16 11 N -0.66 -12.85 6.22 -109.22 -0.68 -13.53 16 12 C 0.11 1.77 5.92 -4.98 -0.03 1.74 16 13 C 0.07 1.03 6.82 -35.40 -0.24 0.79 16 14 C -0.23 -3.00 10.77 -39.90 -0.43 -3.42 16 15 C -0.09 -1.20 10.62 -39.38 -0.42 -1.62 16 16 C -0.09 -1.21 7.18 -36.85 -0.26 -1.47 16 17 C 0.58 7.46 8.30 34.04 0.28 7.74 16 18 O -0.50 -7.18 17.65 -19.36 -0.34 -7.53 16 19 O -0.50 -5.26 13.44 -42.48 -0.57 -5.83 16 20 O -0.14 -2.19 10.67 4.73 0.05 -2.14 16 21 C 0.39 9.04 2.74 37.16 0.10 9.14 16 22 F -0.21 -4.73 16.31 2.25 0.04 -4.70 16 23 F -0.13 -3.46 12.91 2.25 0.03 -3.43 16 24 F -0.23 -4.78 15.04 2.25 0.03 -4.75 16 25 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 26 H 0.34 6.42 7.87 -39.29 -0.31 6.11 16 27 H 0.10 1.51 8.06 -51.93 -0.42 1.09 16 28 H 0.08 1.22 6.02 -51.93 -0.31 0.90 16 29 H 0.16 1.77 8.06 -52.48 -0.42 1.34 16 30 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.42 2.00 9.11 45.56 0.42 2.42 16 LS Contribution 292.11 15.07 4.40 4.40 Total: -1.00 -29.36 292.11 -4.50 -33.85 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -1.42 Total: 5.42 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.54 Total: 5.08 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.15 Total: -35.65 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.86 Total: -15.50 kcal Atomic # 9 Polarization: -12.97 SS G_CDS: 0.10 Total: -12.87 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.36 -4.50 -33.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.718 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds