Wall clock time and date at job start Tue Mar 31 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99918 * 2 1 4 4 H 1.48502 * 109.46846 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47032 * 299.99873 * 3 2 1 6 6 H 1.48506 * 109.46956 * 60.00123 * 3 2 1 7 7 C 1.37877 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00030 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47354 * 60.00603 * 9 7 2 11 11 N 1.46907 * 109.47190 * 180.02562 * 9 7 2 12 12 C 1.46897 * 111.00173 * 205.00049 * 11 9 7 13 13 C 1.50700 * 109.47195 * 180.02562 * 12 11 9 14 14 C 1.35161 * 125.61063 * 89.99840 * 13 12 11 15 15 C 1.40315 * 107.12939 * 180.02562 * 14 13 12 16 16 C 1.36646 * 106.69970 * 359.97438 * 15 14 13 17 17 C 1.46461 * 125.99604 * 179.97438 * 16 15 14 18 18 O 1.21624 * 120.00080 * 0.02562 * 17 16 15 19 19 O 1.34898 * 120.00308 * 180.02562 * 17 16 15 20 20 O 1.33914 * 125.60613 * 270.00175 * 13 12 11 21 21 C 1.52995 * 109.47541 * 300.00038 * 9 7 2 22 22 F 1.39903 * 109.47424 * 300.00102 * 21 9 7 23 23 F 1.39900 * 109.46892 * 60.00082 * 21 9 7 24 24 F 1.39897 * 109.47942 * 180.02562 * 21 9 7 25 25 H 0.96997 * 120.00525 * 359.97438 * 1 2 3 26 26 H 1.00901 * 111.00034 * 81.04775 * 11 9 7 27 27 H 1.09004 * 109.47055 * 59.99741 * 12 11 9 28 28 H 1.09000 * 109.47469 * 299.99910 * 12 11 9 29 29 H 1.08003 * 126.43858 * 0.02562 * 14 13 12 30 30 H 1.07995 * 126.65238 * 179.73999 * 15 14 13 31 31 H 0.96695 * 117.00568 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 7 2.2057 -3.6157 -0.0005 12 6 1.6031 -4.8235 -0.5801 13 6 2.6095 -5.9451 -0.5625 14 6 2.7817 -6.8323 0.4425 15 6 3.8140 -7.7003 0.0552 16 6 4.2246 -7.2940 -1.1832 17 6 5.2870 -7.9088 -1.9824 18 8 5.8914 -8.8725 -1.5521 19 8 5.5950 -7.4061 -3.1957 20 8 3.4804 -6.2265 -1.5401 21 6 0.3719 -2.5805 1.2490 22 9 1.1765 -2.5067 2.3910 23 9 -0.5373 -1.5172 1.2495 24 9 -0.3272 -3.7923 1.2493 25 1 -0.4851 0.8400 0.0004 26 1 2.5521 -3.7953 0.9300 27 1 1.3013 -4.6217 -1.6079 28 1 0.7296 -5.1106 0.0053 29 1 2.2288 -6.8667 1.3696 30 1 4.2099 -8.5266 0.6267 31 1 6.3035 -7.8452 -3.6859 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:22 Heat of formation + Delta-G solvation = -225.754442 kcal Electronic energy + Delta-G solvation = -23620.150513 eV Core-core repulsion = 19260.537603 eV Total energy + Delta-G solvation = -4359.612910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.071 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.48185 -48.12323 -47.70928 -43.82849 -41.01217 -37.73093 -37.27615 -34.89206 -34.15334 -32.23092 -29.70566 -26.88822 -26.28223 -24.24994 -22.96201 -22.63127 -21.58309 -19.60786 -19.28989 -18.75772 -18.73427 -18.69336 -18.04418 -17.68118 -16.72115 -16.46924 -16.26688 -15.46629 -15.27331 -15.02165 -14.79084 -14.57654 -14.52520 -14.33328 -14.22174 -14.11438 -14.02653 -13.95367 -13.89544 -13.04279 -12.75443 -12.74401 -12.53265 -12.44976 -12.16184 -12.05455 -11.51015 -11.14405 -10.59326 -9.85726 -9.43873 -8.14988 -6.37896 -0.30514 1.11908 1.35507 1.45058 1.48471 1.60255 1.78466 2.17511 2.39526 2.43592 2.97807 3.19239 3.61166 3.74164 3.79834 3.81812 4.06592 4.15657 4.28949 4.44512 4.51757 4.71248 4.80700 4.85108 5.25088 5.34313 5.58116 5.75712 5.84196 6.11278 6.32175 6.70659 6.83136 7.31084 8.76952 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.004200 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.073557 B = 6664.331046 C = 7517.744590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.198 3.802 10 H 0.063 0.937 11 N -0.668 5.668 12 C 0.116 3.884 13 C 0.046 3.954 14 C -0.215 4.215 15 C -0.089 4.089 16 C -0.101 4.101 17 C 0.582 3.418 18 O -0.520 6.520 19 O -0.502 6.502 20 O -0.158 6.158 21 C 0.396 3.604 22 F -0.206 7.206 23 F -0.152 7.152 24 F -0.217 7.217 25 H 0.265 0.735 26 H 0.345 0.655 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.182 0.818 30 H 0.186 0.814 31 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 -12.304 -1.555 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.091 0.909 9 C 0.087 3.913 10 H 0.081 0.919 11 N -0.299 5.299 12 C -0.012 4.012 13 C -0.008 4.008 14 C -0.234 4.234 15 C -0.108 4.108 16 C -0.151 4.151 17 C 0.428 3.572 18 O -0.412 6.412 19 O -0.317 6.317 20 O -0.053 6.053 21 C 0.339 3.661 22 F -0.188 7.188 23 F -0.133 7.133 24 F -0.199 7.199 25 H 0.075 0.925 26 H 0.164 0.836 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.200 0.800 30 H 0.204 0.796 31 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 4.704 -11.905 -2.123 12.976 hybrid contribution -0.154 0.304 0.796 0.866 sum 4.551 -11.601 -1.327 12.532 Atomic orbital electron populations 1.70465 1.06851 1.27592 1.46197 1.25842 0.95867 1.03007 0.94184 0.85315 0.78976 0.78634 0.77628 1.19089 1.20167 1.20808 1.21055 0.94077 0.88681 1.53109 0.90934 1.20254 0.89660 0.91898 0.89526 0.91900 1.60588 1.36880 1.04217 1.28222 1.20807 0.91658 0.85667 1.03093 1.22958 0.92351 0.97895 0.87555 1.21964 1.02371 0.97239 1.01853 1.22267 0.95389 1.00350 0.92812 1.20953 1.00936 0.95025 0.98177 1.18710 0.79426 0.79558 0.79528 1.90977 1.51263 1.26840 1.72106 1.84668 1.57511 1.60026 1.29447 1.84116 1.39295 1.40074 1.41853 1.24139 0.81008 0.72476 0.88482 1.92995 1.74189 1.96128 1.55474 1.93393 1.69024 1.54570 1.96324 1.92989 1.81795 1.48136 1.97022 0.92495 0.83613 0.88667 0.89373 0.80021 0.79626 0.69719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.69 9.50 21.45 0.20 -46.48 16 2 C 0.02 0.77 5.20 84.65 0.44 1.21 16 3 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.53 -27.03 8.58 25.60 0.22 -26.82 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.20 8.99 2.26 44.16 0.10 9.09 16 10 H 0.06 3.02 7.80 -2.39 -0.02 3.00 16 11 N -0.67 -25.46 6.22 -499.48 -3.11 -28.57 16 12 C 0.12 3.62 5.92 85.56 0.51 4.13 16 13 C 0.05 1.32 6.82 24.98 0.17 1.49 16 14 C -0.21 -5.11 10.77 22.07 0.24 -4.87 16 15 C -0.09 -2.05 10.62 22.40 0.24 -1.81 16 16 C -0.10 -2.72 7.18 24.04 0.17 -2.54 16 17 C 0.58 14.21 8.30 69.96 0.58 14.79 16 18 O -0.52 -13.98 17.65 19.43 0.34 -13.63 16 19 O -0.50 -9.70 13.44 -56.74 -0.76 -10.46 16 20 O -0.16 -4.86 10.67 -4.92 -0.05 -4.91 16 21 C 0.40 18.00 2.74 71.98 0.20 18.19 16 22 F -0.21 -9.28 16.31 44.97 0.73 -8.54 16 23 F -0.15 -7.86 12.91 44.97 0.58 -7.28 16 24 F -0.22 -8.67 15.04 44.97 0.68 -7.99 16 25 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 26 H 0.34 12.65 7.87 -89.69 -0.71 11.94 16 27 H 0.10 2.96 8.06 -2.39 -0.02 2.94 16 28 H 0.09 2.59 6.02 -2.39 -0.01 2.57 16 29 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.19 3.32 8.06 -2.91 -0.02 3.29 16 31 H 0.44 3.36 9.11 -74.06 -0.67 2.69 16 Total: -1.00 -61.16 292.11 3.35 -57.81 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -0.15 Total: 13.79 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 2.86 Total: 12.86 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -2.90 Total: -75.05 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.47 Total: -29.01 kcal Atomic # 9 Polarization: -25.80 SS G_CDS: 1.99 Total: -23.81 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -61.16 3.35 -57.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.945 kcal (2) G-P(sol) polarization free energy of solvation -61.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds