Wall clock time and date at job start Tue Mar 31 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00038 * 2 1 4 4 H 1.48505 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47106 * 299.99762 * 3 2 1 6 6 H 1.48500 * 109.47397 * 60.00061 * 3 2 1 7 7 C 1.37879 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99705 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47629 * 60.00335 * 9 7 2 11 11 N 1.46904 * 109.46851 * 180.02562 * 9 7 2 12 12 C 1.46899 * 111.00029 * 204.99994 * 11 9 7 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 9 14 14 C 1.34152 * 125.42895 * 89.71401 * 13 12 11 15 15 C 1.47064 * 105.95107 * 179.97438 * 14 13 12 16 16 C 1.47223 * 127.19906 * 180.13555 * 15 14 13 17 17 O 1.21534 * 120.00586 * 0.21868 * 16 15 14 18 18 O 1.34770 * 119.99573 * 180.22080 * 16 15 14 19 19 C 1.36494 * 105.59355 * 0.33761 * 15 14 13 20 20 O 1.33628 * 108.38649 * 359.79202 * 19 15 14 21 21 C 1.52997 * 109.47156 * 299.99679 * 9 7 2 22 22 F 1.39899 * 109.47101 * 300.00229 * 21 9 7 23 23 F 1.39897 * 109.47456 * 60.00424 * 21 9 7 24 24 F 1.39907 * 109.47250 * 180.02562 * 21 9 7 25 25 H 0.97006 * 119.99890 * 359.97438 * 1 2 3 26 26 H 1.00908 * 110.99583 * 328.94906 * 11 9 7 27 27 H 1.09002 * 109.47043 * 299.99792 * 12 11 9 28 28 H 1.09001 * 109.47354 * 59.99854 * 12 11 9 29 29 H 1.08003 * 127.02273 * 0.03801 * 14 13 12 30 30 H 0.96705 * 117.00252 * 179.97438 * 18 16 15 31 31 H 1.07997 * 125.80831 * 179.77327 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6246 -2.5571 -0.8897 11 7 2.2054 -3.6158 0.0018 12 6 1.6032 -4.8238 -0.5777 13 6 2.6100 -5.9451 -0.5600 14 6 2.7817 -6.8203 0.4420 15 6 3.8635 -7.7192 0.0126 16 6 4.4260 -8.8558 0.7605 17 8 3.9887 -9.1366 1.8591 18 8 5.4259 -9.5849 0.2267 19 6 4.2401 -7.2763 -1.2223 20 8 3.4824 -6.2228 -1.5414 21 6 0.3708 -2.5798 1.2495 22 9 1.1747 -2.5055 2.3920 23 9 -0.5383 -1.5165 1.2490 24 9 -0.3284 -3.7916 1.2498 25 1 -0.4850 0.8401 0.0004 26 1 3.0542 -3.3664 -0.4836 27 1 0.7292 -5.1105 0.0072 28 1 1.3022 -4.6225 -1.6058 29 1 2.2361 -6.8578 1.3734 30 1 5.7630 -10.3211 0.7554 31 1 5.0182 -7.7042 -1.8369 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061849.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:26 Heat of formation + Delta-G solvation = -230.938836 kcal Electronic energy + Delta-G solvation = -23574.332510 eV Core-core repulsion = 19214.494787 eV Total energy + Delta-G solvation = -4359.837722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.071 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.32475 -47.96795 -47.62558 -43.66023 -40.87051 -37.69617 -37.04386 -34.86280 -33.97176 -32.16816 -29.38880 -26.53278 -25.97979 -25.51052 -22.74356 -22.25229 -21.37317 -19.43197 -18.80946 -18.75646 -18.62633 -18.36948 -17.51211 -17.21484 -16.87335 -16.74464 -16.39864 -15.95222 -15.37410 -15.21549 -14.96305 -14.63597 -14.38508 -14.23563 -14.18169 -14.07096 -13.89994 -13.83012 -13.47536 -12.96552 -12.82677 -12.62793 -12.56540 -12.45563 -12.03308 -11.85034 -11.34935 -10.96691 -10.65342 -9.78685 -9.42895 -8.18120 -6.44481 0.14834 0.84704 1.44266 1.47761 1.58969 1.71901 2.01608 2.08705 2.37408 2.57094 2.98117 3.26242 3.51624 3.72428 3.87424 3.98959 4.02809 4.28491 4.39213 4.54792 4.64695 4.71553 4.86263 4.99389 5.18748 5.53032 5.55233 5.68688 5.95852 5.98286 6.44408 6.67512 6.98194 7.25902 8.74447 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.024942 B = 0.004017 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.336265 B = 6968.129301 C = 7462.684016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.193 3.807 10 H 0.033 0.967 11 N -0.679 5.679 12 C 0.129 3.871 13 C -0.004 4.004 14 C -0.154 4.154 15 C -0.265 4.265 16 C 0.565 3.435 17 O -0.557 6.557 18 O -0.499 6.499 19 C 0.092 3.908 20 O -0.172 6.172 21 C 0.434 3.566 22 F -0.204 7.204 23 F -0.155 7.155 24 F -0.220 7.220 25 H 0.266 0.734 26 H 0.358 0.642 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.149 0.851 30 H 0.436 0.564 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.269 -13.375 -5.054 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.188 4.188 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.211 1.211 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.082 3.918 10 H 0.050 0.950 11 N -0.312 5.312 12 C 0.001 3.999 13 C -0.052 4.052 14 C -0.174 4.174 15 C -0.267 4.267 16 C 0.412 3.588 17 O -0.449 6.449 18 O -0.313 6.313 19 C 0.021 3.979 20 O -0.066 6.066 21 C 0.378 3.622 22 F -0.186 7.186 23 F -0.136 7.136 24 F -0.202 7.202 25 H 0.076 0.924 26 H 0.178 0.822 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.167 0.833 30 H 0.298 0.702 31 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 7.679 -13.012 -4.601 15.794 hybrid contribution -0.010 0.431 0.301 0.526 sum 7.669 -12.581 -4.299 15.349 Atomic orbital electron populations 1.70500 1.07074 1.27705 1.45503 1.25880 0.95866 1.03260 0.93825 0.85266 0.79061 0.78325 0.77610 1.18640 1.19963 1.21080 1.21197 0.94063 0.89068 1.54601 0.90319 1.19929 0.91384 0.91358 0.89167 0.95001 1.60231 1.08075 1.03358 1.59556 1.20637 0.93119 0.86128 1.00019 1.21959 0.95700 0.99695 0.87852 1.22487 0.99207 0.95584 1.00149 1.20539 1.05530 1.01754 0.98911 1.19639 0.76389 0.80337 0.82439 1.90901 1.61396 1.69970 1.22675 1.84480 1.48542 1.45795 1.52514 1.25523 0.93338 0.84376 0.94622 1.83803 1.39361 1.41626 1.41843 1.22742 0.79889 0.71966 0.87600 1.92989 1.74419 1.96073 1.55134 1.93374 1.69086 1.54756 1.96376 1.92961 1.81711 1.48466 1.97022 0.92413 0.82156 0.87863 0.92187 0.83291 0.70191 0.71628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.15 9.50 21.45 0.20 -46.95 16 2 C 0.02 0.85 5.20 84.65 0.44 1.29 16 3 Si 0.97 40.95 29.54 68.60 2.03 42.98 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -27.84 8.33 25.60 0.21 -27.63 16 8 H 0.08 3.85 7.62 -2.91 -0.02 3.83 16 9 C 0.19 9.04 2.26 44.17 0.10 9.13 16 10 H 0.03 1.59 7.80 -2.39 -0.02 1.57 16 11 N -0.68 -26.61 6.21 -499.46 -3.10 -29.71 16 12 C 0.13 4.26 5.91 85.56 0.51 4.77 16 13 C 0.00 -0.11 6.79 24.75 0.17 0.06 16 14 C -0.15 -4.62 10.90 23.65 0.26 -4.36 16 15 C -0.26 -6.51 6.31 -19.01 -0.12 -6.63 16 16 C 0.57 13.39 8.33 70.18 0.58 13.98 16 17 O -0.56 -17.63 17.77 19.73 0.35 -17.28 16 18 O -0.50 -6.83 13.28 -56.81 -0.75 -7.59 16 19 C 0.09 1.67 11.94 67.41 0.80 2.48 16 20 O -0.17 -4.16 10.52 4.65 0.05 -4.11 16 21 C 0.43 21.48 2.81 71.98 0.20 21.68 16 22 F -0.20 -10.42 16.94 44.97 0.76 -9.65 16 23 F -0.15 -8.40 12.91 44.97 0.58 -7.82 16 24 F -0.22 -9.90 15.04 44.97 0.68 -9.23 16 25 H 0.27 13.68 8.31 -92.70 -0.77 12.91 16 26 H 0.36 13.26 8.22 -89.69 -0.74 12.53 16 27 H 0.10 3.55 6.02 -2.39 -0.01 3.54 16 28 H 0.06 1.84 8.06 -2.39 -0.02 1.83 16 29 H 0.15 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.44 2.06 9.11 -74.05 -0.67 1.38 16 31 H 0.27 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -65.95 293.05 3.77 -62.18 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.18 Total: 12.41 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 3.16 Total: 14.77 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -2.90 Total: -76.66 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.36 Total: -28.98 kcal Atomic # 9 Polarization: -28.72 SS G_CDS: 2.02 Total: -26.70 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -65.95 3.77 -62.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061849.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.756 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds