Wall clock time and date at job start Tue Mar 31 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46845 * 141.42333 * 3 2 1 5 5 C 1.36929 * 120.00408 * 276.05931 * 4 3 2 6 6 H 1.08004 * 120.00253 * 180.78404 * 5 4 3 7 7 C 1.38812 * 120.00024 * 0.78370 * 5 4 3 8 8 N 1.31628 * 119.99696 * 27.32274 * 7 5 4 9 9 Si 1.86798 * 120.00199 * 207.32330 * 7 5 4 10 10 H 1.48493 * 109.47236 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47201 * 120.00288 * 9 7 5 12 12 H 1.48505 * 109.47080 * 239.99820 * 9 7 5 13 13 C 1.46500 * 119.99617 * 96.05757 * 4 3 2 14 14 C 1.50698 * 109.47435 * 269.99911 * 13 4 3 15 15 C 1.38308 * 119.93398 * 259.98114 * 14 13 4 16 16 C 1.38389 * 120.33089 * 180.02562 * 15 14 13 17 17 C 1.37930 * 120.18594 * 359.73608 * 16 15 14 18 18 C 1.39640 * 119.85667 * 0.52196 * 17 16 15 19 19 C 1.47649 * 120.15913 * 179.76424 * 18 17 16 20 20 O 1.21476 * 119.99790 * 179.71627 * 19 18 17 21 21 O 1.34716 * 119.99746 * 359.44481 * 19 18 17 22 22 C 1.38110 * 119.93150 * 79.99993 * 14 13 4 23 23 Cl 1.73603 * 120.09285 * 359.95876 * 22 14 13 24 24 H 4.40637 * 5.51431 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47504 * 21.42856 * 3 2 1 26 26 H 1.08995 * 109.47309 * 261.41994 * 3 2 1 27 27 H 0.96998 * 119.99586 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46957 * 149.99892 * 13 4 3 29 29 H 1.09004 * 109.47191 * 30.00027 * 13 4 3 30 30 H 1.08002 * 119.83954 * 0.04236 * 15 14 13 31 31 H 1.07996 * 119.90969 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.06672 * 180.25072 * 17 16 15 33 33 H 0.96704 * 117.00180 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.0808 -0.8613 5 6 3.2440 0.8828 -2.2117 6 1 3.6156 1.6748 -2.8451 7 6 2.8783 -0.3358 -2.7668 8 7 1.9684 -1.0813 -2.1761 9 14 3.6772 -0.9176 -4.3519 10 1 4.6602 0.0959 -4.8118 11 1 4.3716 -2.2080 -4.1115 12 1 2.6344 -1.1031 -5.3928 13 6 3.5035 2.3726 -0.2777 14 6 2.2981 3.2767 -0.2540 15 6 2.1426 4.2454 -1.2289 16 6 1.0391 5.0804 -1.2147 17 6 0.0823 4.9486 -0.2300 18 6 0.2341 3.9768 0.7612 19 6 -0.7833 3.8334 1.8215 20 8 -0.6509 2.9836 2.6794 21 8 -1.8557 4.6486 1.8406 22 6 1.3510 3.1364 0.7413 23 17 1.5469 1.9197 1.9641 24 1 -1.0502 -0.0002 0.0004 25 1 3.0098 -0.9558 -0.3754 26 1 3.0092 0.1541 1.0161 27 1 1.7131 -1.9330 -2.5638 28 1 4.2895 2.8308 -0.8780 29 1 3.8646 2.2217 0.7396 30 1 2.8860 4.3507 -2.0053 31 1 0.9243 5.8342 -1.9795 32 1 -0.7801 5.5986 -0.2231 33 1 -2.4946 4.5169 2.5545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602715687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:39 Heat of formation + Delta-G solvation = 33.156671 kcal Electronic energy + Delta-G solvation = -21391.747711 eV Core-core repulsion = 18025.927934 eV Total energy + Delta-G solvation = -3365.819777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17084 -38.66536 -36.12050 -36.00875 -35.61662 -32.44027 -31.37784 -30.78201 -30.01706 -26.26287 -25.75363 -24.49124 -22.37168 -21.22267 -20.47559 -17.75971 -17.49135 -17.08504 -16.25850 -15.93248 -15.46592 -15.19240 -15.04083 -14.29118 -13.84070 -13.61152 -13.36094 -13.12000 -12.61996 -12.39932 -11.98201 -11.72326 -11.44704 -11.36033 -11.22893 -11.08678 -10.90995 -10.65152 -10.52766 -10.28871 -9.97066 -9.44855 -8.80578 -8.74633 -8.67010 -8.22034 -8.11901 -7.19718 -5.84297 -3.15313 0.90693 1.53527 2.65737 2.79644 3.15712 3.34554 3.43532 3.45064 3.94221 4.32988 4.54056 4.69619 4.95598 5.14589 5.18130 5.29892 5.53978 5.56812 5.71828 5.80703 6.00710 6.09724 6.15136 6.31877 6.44914 6.56104 6.60330 6.73894 6.82601 7.01257 7.38034 7.54705 7.71545 8.06657 8.15780 9.04406 9.43115 9.70737 10.13262 11.16447 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.006290 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.701409 B = 4450.770924 C = 4939.849416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.076 4.076 3 C 0.265 3.735 4 N -0.575 5.575 5 C -0.265 4.265 6 H 0.081 0.919 7 C 0.006 3.994 8 N -0.878 5.878 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.293 1.293 13 C 0.178 3.822 14 C -0.095 4.095 15 C -0.062 4.062 16 C -0.137 4.137 17 C -0.071 4.071 18 C -0.131 4.131 19 C 0.521 3.479 20 O -0.492 6.492 21 O -0.518 6.518 22 C 0.039 3.961 23 Cl -0.026 7.026 24 H 0.181 0.819 25 H 0.095 0.905 26 H 0.040 0.960 27 H 0.255 0.745 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 11.553 5.837 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.079 4.079 3 C 0.140 3.860 4 N -0.293 5.293 5 C -0.393 4.393 6 H 0.099 0.901 7 C -0.193 4.193 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.221 1.221 13 C 0.050 3.950 14 C -0.099 4.099 15 C -0.082 4.082 16 C -0.155 4.155 17 C -0.090 4.090 18 C -0.133 4.133 19 C 0.364 3.636 20 O -0.379 6.379 21 O -0.330 6.330 22 C 0.011 3.989 23 Cl 0.004 6.996 24 H 0.198 0.802 25 H 0.113 0.887 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.578 11.022 5.800 12.554 hybrid contribution -0.884 -0.560 -0.621 1.217 sum -2.461 10.462 5.179 11.930 Atomic orbital electron populations 1.23909 0.95086 1.05735 1.07862 1.23797 0.94828 0.95521 0.93750 1.18226 0.83293 0.93399 0.91062 1.44600 1.73497 1.06508 1.04686 1.19272 1.38283 0.98475 0.83263 0.90131 1.24820 0.97709 0.98389 0.98423 1.70253 1.27456 1.13712 1.40575 0.86314 0.79325 0.78794 0.82943 1.20290 1.21435 1.22075 1.20077 0.91250 0.85181 0.98449 1.21167 1.00374 0.95844 0.92560 1.21248 0.97362 0.92821 0.96759 1.21120 0.94733 1.00635 0.98987 1.21195 0.98829 0.96157 0.92844 1.18717 0.94895 1.01722 0.98003 1.20823 0.80387 0.78110 0.84258 1.90973 1.75951 1.33134 1.37877 1.84549 1.34338 1.58849 1.55274 1.20832 0.94214 0.91118 0.92733 1.98394 1.96543 1.52159 1.52497 0.80153 0.88686 0.94233 0.93443 0.91336 0.92144 0.85009 0.85388 0.84684 0.73287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.53 18.80 29.55 0.56 -6.98 16 2 C -0.08 -1.90 8.27 -37.13 -0.31 -2.20 16 3 C 0.26 6.31 4.82 -6.83 -0.03 6.27 16 4 N -0.58 -13.44 2.49 -177.95 -0.44 -13.88 16 5 C -0.26 -6.75 9.66 -15.06 -0.15 -6.90 16 6 H 0.08 1.99 7.96 -52.48 -0.42 1.57 16 7 C 0.01 0.16 4.97 -17.43 -0.09 0.07 16 8 N -0.88 -24.45 8.91 55.49 0.49 -23.95 16 9 Si 0.90 20.89 29.63 -169.99 -5.04 15.85 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.18 3.39 5.39 -5.19 -0.03 3.37 16 14 C -0.09 -1.74 5.46 -104.64 -0.57 -2.32 16 15 C -0.06 -1.00 9.66 -39.50 -0.38 -1.38 16 16 C -0.14 -1.90 10.03 -39.64 -0.40 -2.30 16 17 C -0.07 -1.03 9.62 -39.17 -0.38 -1.41 16 18 C -0.13 -2.25 5.88 -104.96 -0.62 -2.87 16 19 C 0.52 8.46 8.26 34.57 0.29 8.75 16 20 O -0.49 -9.19 14.76 -19.25 -0.28 -9.47 16 21 O -0.52 -6.21 12.68 -40.54 -0.51 -6.72 16 22 C 0.04 0.75 5.94 -39.05 -0.23 0.51 16 23 Cl -0.03 -0.51 18.98 -51.86 -0.98 -1.49 16 24 H 0.18 4.00 7.80 -54.08 -0.42 3.58 16 25 H 0.10 2.48 6.27 -51.93 -0.33 2.15 16 26 H 0.04 0.85 6.46 -51.93 -0.34 0.52 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.07 1.19 7.89 -51.93 -0.41 0.78 16 29 H 0.06 1.08 7.06 -51.93 -0.37 0.71 16 30 H 0.13 1.87 8.03 -52.49 -0.42 1.45 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.14 1.62 7.61 -52.49 -0.40 1.22 16 33 H 0.41 2.94 9.11 45.56 0.42 3.35 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -31.67 300.10 -6.82 -38.49 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -2.24 Total: 4.03 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.33 Total: -7.38 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.05 Total: -37.83 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.80 Total: -16.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.85 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.98 Total: -1.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.67 -6.82 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602715687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.643 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds