Wall clock time and date at job start Tue Mar 31 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46845 * 141.42333 * 3 2 1 5 5 C 1.36929 * 120.00408 * 276.05931 * 4 3 2 6 6 H 1.08004 * 120.00253 * 180.78404 * 5 4 3 7 7 C 1.38812 * 120.00024 * 0.78370 * 5 4 3 8 8 N 1.31628 * 119.99696 * 27.32274 * 7 5 4 9 9 Si 1.86798 * 120.00199 * 207.32330 * 7 5 4 10 10 H 1.48493 * 109.47236 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47201 * 120.00288 * 9 7 5 12 12 H 1.48505 * 109.47080 * 239.99820 * 9 7 5 13 13 C 1.46500 * 119.99617 * 96.05757 * 4 3 2 14 14 C 1.50698 * 109.47435 * 269.99911 * 13 4 3 15 15 C 1.38308 * 119.93398 * 259.98114 * 14 13 4 16 16 C 1.38389 * 120.33089 * 180.02562 * 15 14 13 17 17 C 1.37930 * 120.18594 * 359.73608 * 16 15 14 18 18 C 1.39640 * 119.85667 * 0.52196 * 17 16 15 19 19 C 1.47649 * 120.15913 * 179.76424 * 18 17 16 20 20 O 1.21476 * 119.99790 * 179.71627 * 19 18 17 21 21 O 1.34716 * 119.99746 * 359.44481 * 19 18 17 22 22 C 1.38110 * 119.93150 * 79.99993 * 14 13 4 23 23 Cl 1.73603 * 120.09285 * 359.95876 * 22 14 13 24 24 H 4.40637 * 5.51431 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47504 * 21.42856 * 3 2 1 26 26 H 1.08995 * 109.47309 * 261.41994 * 3 2 1 27 27 H 0.96998 * 119.99586 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46957 * 149.99892 * 13 4 3 29 29 H 1.09004 * 109.47191 * 30.00027 * 13 4 3 30 30 H 1.08002 * 119.83954 * 0.04236 * 15 14 13 31 31 H 1.07996 * 119.90969 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.06672 * 180.25072 * 17 16 15 33 33 H 0.96704 * 117.00180 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.0808 -0.8613 5 6 3.2440 0.8828 -2.2117 6 1 3.6156 1.6748 -2.8451 7 6 2.8783 -0.3358 -2.7668 8 7 1.9684 -1.0813 -2.1761 9 14 3.6772 -0.9176 -4.3519 10 1 4.6602 0.0959 -4.8118 11 1 4.3716 -2.2080 -4.1115 12 1 2.6344 -1.1031 -5.3928 13 6 3.5035 2.3726 -0.2777 14 6 2.2981 3.2767 -0.2540 15 6 2.1426 4.2454 -1.2289 16 6 1.0391 5.0804 -1.2147 17 6 0.0823 4.9486 -0.2300 18 6 0.2341 3.9768 0.7612 19 6 -0.7833 3.8334 1.8215 20 8 -0.6509 2.9836 2.6794 21 8 -1.8557 4.6486 1.8406 22 6 1.3510 3.1364 0.7413 23 17 1.5469 1.9197 1.9641 24 1 -1.0502 -0.0002 0.0004 25 1 3.0098 -0.9558 -0.3754 26 1 3.0092 0.1541 1.0161 27 1 1.7131 -1.9330 -2.5638 28 1 4.2895 2.8308 -0.8780 29 1 3.8646 2.2217 0.7396 30 1 2.8860 4.3507 -2.0053 31 1 0.9243 5.8342 -1.9795 32 1 -0.7801 5.5986 -0.2231 33 1 -2.4946 4.5169 2.5545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602715687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:39 Heat of formation + Delta-G solvation = 14.486723 kcal Electronic energy + Delta-G solvation = -21392.557301 eV Core-core repulsion = 18025.927934 eV Total energy + Delta-G solvation = -3366.629367 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37971 -39.93807 -37.77416 -37.31026 -36.89651 -34.01957 -33.27419 -32.11414 -31.56413 -28.05607 -27.42406 -25.71798 -23.99090 -22.51114 -21.82501 -19.41196 -18.86572 -18.34503 -18.10674 -17.14854 -16.95325 -16.62768 -16.46784 -15.61348 -15.54804 -15.13458 -15.00591 -14.44748 -14.04534 -13.86183 -13.67918 -13.36465 -12.88745 -12.72135 -12.56880 -12.51711 -12.50742 -12.24394 -12.07308 -11.92082 -11.82273 -10.88608 -10.67044 -10.57072 -10.11704 -9.90143 -9.56655 -9.04978 -7.79716 -5.11772 -0.33907 0.28845 1.30049 1.49686 1.54123 1.57629 1.62904 2.06117 2.41371 2.63574 2.75134 2.78052 3.29537 3.76141 3.92762 3.98592 4.08978 4.21107 4.30078 4.35393 4.65185 4.72569 4.88253 4.94696 4.99528 5.15456 5.35991 5.45165 5.52362 5.58961 5.65733 5.76773 5.83074 6.24809 7.00727 7.10966 7.52451 7.84736 8.25822 9.20449 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.006290 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.701409 B = 4450.770924 C = 4939.849416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.082 4.082 3 C 0.271 3.729 4 N -0.588 5.588 5 C -0.259 4.259 6 H 0.090 0.910 7 C -0.047 4.047 8 N -0.910 5.910 9 Si 0.955 3.045 10 H -0.263 1.263 11 H -0.296 1.296 12 H -0.306 1.306 13 C 0.176 3.824 14 C -0.116 4.116 15 C -0.065 4.065 16 C -0.127 4.127 17 C -0.058 4.058 18 C -0.152 4.152 19 C 0.524 3.476 20 O -0.525 6.525 21 O -0.502 6.502 22 C 0.016 3.984 23 Cl -0.047 7.047 24 H 0.197 0.803 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.244 0.756 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.167 0.833 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 14.312 4.916 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.342 4.342 2 C -0.085 4.085 3 C 0.146 3.854 4 N -0.307 5.307 5 C -0.389 4.389 6 H 0.108 0.892 7 C -0.243 4.243 8 N -0.556 5.556 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.224 1.224 12 H -0.234 1.234 13 C 0.050 3.950 14 C -0.120 4.120 15 C -0.084 4.084 16 C -0.145 4.145 17 C -0.077 4.077 18 C -0.154 4.154 19 C 0.368 3.632 20 O -0.415 6.415 21 O -0.316 6.316 22 C -0.012 4.012 23 Cl -0.017 7.017 24 H 0.214 0.786 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.184 0.816 33 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -1.944 13.858 4.894 14.824 hybrid contribution -0.821 -1.178 -0.276 1.462 sum -2.765 12.680 4.618 13.775 Atomic orbital electron populations 1.24417 0.95876 1.05867 1.08080 1.24127 0.95377 0.95421 0.93606 1.18046 0.82948 0.92671 0.91741 1.44595 1.73784 1.08332 1.03994 1.19583 1.36649 0.98376 0.84244 0.89235 1.25435 0.98614 0.98968 1.01238 1.70401 1.29305 1.13715 1.42145 0.85395 0.78216 0.78138 0.79757 1.18732 1.22354 1.23382 1.20184 0.92061 0.83863 0.98876 1.21075 0.99664 0.97469 0.93756 1.21594 0.98512 0.92244 0.96062 1.21586 0.93221 1.00404 0.99252 1.21639 0.99587 0.94991 0.91442 1.19016 0.94878 1.02270 0.99263 1.20763 0.80938 0.77901 0.83573 1.90965 1.76855 1.34637 1.39050 1.84477 1.33604 1.57299 1.56219 1.21055 0.95556 0.91562 0.93014 1.98375 1.96682 1.53270 1.53360 0.78567 0.91519 0.92656 0.94612 0.89566 0.91537 0.83210 0.81231 0.81589 0.70683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -16.07 18.80 74.32 1.40 -14.67 16 2 C -0.08 -4.17 8.27 31.12 0.26 -3.92 16 3 C 0.27 13.17 4.82 84.57 0.41 13.58 16 4 N -0.59 -27.32 2.49 -716.91 -1.79 -29.11 16 5 C -0.26 -13.06 9.66 84.03 0.81 -12.25 16 6 H 0.09 4.25 7.96 -2.91 -0.02 4.23 16 7 C -0.05 -2.48 4.97 84.86 0.42 -2.06 16 8 N -0.91 -51.87 8.91 21.65 0.19 -51.68 16 9 Si 0.96 43.34 29.63 68.60 2.03 45.38 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.31 -14.33 7.11 99.48 0.71 -13.63 16 13 C 0.18 6.54 5.39 85.63 0.46 7.00 16 14 C -0.12 -4.08 5.46 -19.88 -0.11 -4.19 16 15 C -0.07 -1.87 9.66 22.32 0.22 -1.65 16 16 C -0.13 -2.96 10.03 22.23 0.22 -2.74 16 17 C -0.06 -1.46 9.62 22.54 0.22 -1.24 16 18 C -0.15 -4.92 5.88 -20.08 -0.12 -5.04 16 19 C 0.52 16.16 8.26 70.31 0.58 16.74 16 20 O -0.52 -19.38 14.76 19.91 0.29 -19.09 16 21 O -0.50 -10.52 12.68 -56.26 -0.71 -11.23 16 22 C 0.02 0.60 5.94 22.61 0.13 0.73 16 23 Cl -0.05 -1.85 18.98 -2.72 -0.05 -1.90 16 24 H 0.20 8.73 7.80 -4.41 -0.03 8.70 16 25 H 0.07 3.61 6.27 -2.39 -0.01 3.60 16 26 H 0.06 2.45 6.46 -2.39 -0.02 2.43 16 27 H 0.24 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.09 2.83 7.89 -2.39 -0.02 2.81 16 29 H 0.07 2.34 7.06 -2.39 -0.02 2.33 16 30 H 0.15 3.69 8.03 -2.91 -0.02 3.66 16 31 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.17 3.11 7.61 -2.91 -0.02 3.09 16 33 H 0.43 4.94 9.11 -74.05 -0.67 4.26 16 Total: -1.00 -68.99 300.10 5.35 -63.64 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.48 Total: 13.71 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 4.90 Total: -9.72 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.59 Total: -80.79 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.42 Total: -30.32 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.05 Total: -1.90 kcal Total: -68.99 5.35 -63.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602715687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.126 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds