Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86803 * 119.99850 * 2 1 4 4 H 1.48510 * 109.47148 * 239.99922 * 3 2 1 5 5 H 1.48499 * 109.47211 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00234 * 3 2 1 7 7 C 1.40121 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.46202 * 120.00108 * 359.97438 * 7 2 1 10 10 O 1.21726 * 119.99425 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00170 * 179.97438 * 9 7 2 12 12 C 1.39071 * 119.99977 * 185.27935 * 11 9 7 13 13 C 1.39272 * 119.93249 * 213.94198 * 12 11 9 14 14 C 1.37614 * 120.06806 * 180.25894 * 13 12 11 15 15 C 1.39839 * 119.92694 * 359.44512 * 14 13 12 16 16 C 1.47460 * 120.06259 * 180.29959 * 15 14 13 17 17 O 1.21510 * 120.00249 * 0.02562 * 16 15 14 18 18 O 1.34752 * 119.99938 * 180.02562 * 16 15 14 19 19 C 1.45195 * 117.00253 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47593 * 179.97438 * 19 18 16 21 21 O 1.20832 * 119.99859 * 359.97438 * 20 19 18 22 22 O 1.34232 * 120.00333 * 179.97438 * 20 19 18 23 23 C 1.39831 * 119.86816 * 0.27906 * 15 14 13 24 24 C 1.37607 * 119.93139 * 0.02562 * 23 15 14 25 25 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00147 * 5.27717 * 11 9 7 27 27 H 1.08001 * 119.96621 * 0.02562 * 13 12 11 28 28 H 1.07993 * 120.03176 * 179.71858 * 14 13 12 29 29 H 1.09004 * 109.46827 * 299.99847 * 19 18 16 30 30 H 1.09002 * 109.47351 * 59.99670 * 19 18 16 31 31 H 0.96697 * 116.99697 * 179.97438 * 22 20 19 32 32 H 1.08004 * 120.03444 * 180.02562 * 23 15 14 33 33 H 1.08003 * 119.96737 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6965 -1.2126 5 1 1.2754 2.7465 -0.0006 6 1 3.0942 1.6965 1.2125 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2134 -0.0010 9 6 1.2761 -2.4796 -0.0005 10 8 0.0588 -2.4796 0.0004 11 7 1.9499 -3.6468 -0.0016 12 6 1.2589 -4.8486 -0.1124 13 6 1.7258 -5.9821 0.5485 14 6 1.0472 -7.1741 0.4364 15 6 -0.1187 -7.2435 -0.3326 16 6 -0.8519 -8.5175 -0.4493 17 8 -0.4434 -9.5083 0.1234 18 8 -1.9750 -8.5831 -1.1911 19 6 -2.6450 -9.8693 -1.2606 20 6 -3.8721 -9.7505 -2.1273 21 8 -4.1534 -8.6903 -2.6340 22 8 -4.6525 -10.8224 -2.3364 23 6 -0.5881 -6.1022 -0.9902 24 6 0.0984 -4.9148 -0.8794 25 1 -0.4850 0.8400 -0.0004 26 1 2.9169 -3.6486 0.0749 27 1 2.6234 -5.9266 1.1464 28 1 1.4122 -8.0538 0.9454 29 1 -1.9680 -10.6090 -1.6882 30 1 -2.9375 -10.1813 -0.2580 31 1 -5.4288 -10.6971 -2.8991 32 1 -1.4885 -6.1527 -1.5845 33 1 -0.2639 -4.0328 -1.3868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605582144.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = -183.168384 kcal Electronic energy + Delta-G solvation = -21860.881145 eV Core-core repulsion = 18044.971645 eV Total energy + Delta-G solvation = -3815.909500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87988 -40.14103 -39.16565 -37.13909 -36.60976 -36.15540 -33.69520 -32.60441 -30.68234 -30.17860 -29.00198 -26.53817 -23.87490 -22.38490 -22.13049 -21.05762 -19.85246 -18.60226 -17.81379 -17.74657 -17.20788 -17.06122 -16.54979 -16.00616 -15.62823 -15.59822 -14.60300 -14.16971 -14.07763 -13.67580 -13.48251 -13.22769 -12.93854 -12.71611 -12.66603 -12.09499 -11.98126 -11.89583 -11.39062 -11.15446 -11.02316 -10.92380 -10.83654 -10.70007 -10.49966 -10.44992 -9.53667 -9.01042 -8.66081 -7.91972 -7.35483 -6.45732 -4.94295 1.04812 1.80060 1.83040 1.85324 2.72103 3.03439 3.08778 3.10642 3.15869 3.89652 4.08801 4.39151 4.43193 4.60663 4.68083 4.79173 4.96427 5.21586 5.31957 5.49993 5.72895 5.85934 6.02951 6.07785 6.11398 6.40632 6.61282 6.74441 6.86017 7.13070 7.19438 7.48577 7.56074 7.75403 7.84523 8.00267 8.73411 9.01953 10.22859 10.44079 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.002929 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.577545 B = 9557.779112 C =10452.519699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.537 3.463 10 O -0.554 6.554 11 N -0.693 5.693 12 C 0.240 3.760 13 C -0.195 4.195 14 C -0.024 4.024 15 C -0.190 4.190 16 C 0.525 3.475 17 O -0.520 6.520 18 O -0.335 6.335 19 C 0.077 3.923 20 C 0.480 3.520 21 O -0.487 6.487 22 O -0.513 6.513 23 C -0.034 4.034 24 C -0.149 4.149 25 H 0.275 0.725 26 H 0.397 0.603 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.418 0.582 32 H 0.134 0.866 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 -16.215 -2.719 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.435 6.435 11 N -0.335 5.335 12 C 0.137 3.863 13 C -0.216 4.216 14 C -0.043 4.043 15 C -0.193 4.193 16 C 0.373 3.627 17 O -0.410 6.410 18 O -0.252 6.252 19 C 0.001 3.999 20 C 0.321 3.679 21 O -0.373 6.373 22 O -0.326 6.326 23 C -0.053 4.053 24 C -0.170 4.170 25 H 0.086 0.914 26 H 0.231 0.769 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.279 0.721 32 H 0.152 0.848 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.632 -15.993 -2.463 16.395 hybrid contribution 0.349 0.718 -0.225 0.830 sum -2.283 -15.275 -2.688 15.677 Atomic orbital electron populations 1.69961 1.07199 1.28211 1.32942 1.25764 0.94755 1.00643 0.92501 0.86296 0.79784 0.80322 0.79669 1.19041 1.20314 1.19061 1.20836 0.93883 0.88846 1.53517 0.90829 1.18469 0.87570 0.81999 0.77477 1.90663 1.13560 1.85817 1.53494 1.44337 1.10107 1.04536 1.74497 1.18325 0.92138 0.86455 0.89339 1.20830 1.03884 0.92674 1.04249 1.20812 0.91779 0.97451 0.94249 1.18669 0.99667 0.90781 1.10152 1.21328 0.77416 0.89323 0.74618 1.90811 1.67303 1.37494 1.45386 1.86604 1.38853 1.33461 1.66324 1.21933 0.91060 0.85877 1.01002 1.22693 0.84065 0.81536 0.79650 1.90817 1.70815 1.29082 1.46546 1.84432 1.40258 1.40070 1.67878 1.21305 0.97968 0.90958 0.95109 1.21351 0.96663 0.98486 1.00467 0.91450 0.76855 0.85352 0.85096 0.86737 0.86726 0.72145 0.84847 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.22 11.82 55.55 0.66 -20.56 16 2 C 0.09 2.22 5.50 -17.35 -0.10 2.12 16 3 Si 0.92 18.80 29.56 -169.99 -5.02 13.78 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.54 -13.92 9.54 -35.68 -0.34 -14.26 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.54 14.12 7.46 -13.07 -0.10 14.03 16 10 O -0.55 -16.53 12.69 5.17 0.07 -16.46 16 11 N -0.69 -14.48 5.30 -11.19 -0.06 -14.54 16 12 C 0.24 4.67 6.27 -83.81 -0.53 4.15 16 13 C -0.19 -3.13 9.94 -39.42 -0.39 -3.52 16 14 C -0.02 -0.37 9.58 -39.21 -0.38 -0.74 16 15 C -0.19 -3.10 5.88 -104.95 -0.62 -3.72 16 16 C 0.53 8.02 7.89 34.49 0.27 8.29 16 17 O -0.52 -8.29 16.13 -19.27 -0.31 -8.60 16 18 O -0.34 -4.72 8.99 -47.33 -0.43 -5.14 16 19 C 0.08 0.77 6.07 36.01 0.22 0.98 16 20 C 0.48 4.87 8.41 36.01 0.30 5.17 16 21 O -0.49 -6.96 17.26 -25.41 -0.44 -7.40 16 22 O -0.51 -3.39 13.42 -39.26 -0.53 -3.91 16 23 C -0.03 -0.60 9.60 -39.22 -0.38 -0.97 16 24 C -0.15 -3.00 8.62 -39.43 -0.34 -3.34 16 25 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 26 H 0.40 6.92 8.79 -40.82 -0.36 6.56 16 27 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.13 1.77 7.64 -52.49 -0.40 1.37 16 29 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.42 1.01 9.10 45.56 0.41 1.42 16 32 H 0.13 2.18 7.60 -52.48 -0.40 1.78 16 33 H 0.15 3.38 6.41 -52.48 -0.34 3.05 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -34.90 311.28 -5.63 -40.54 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -1.89 Total: 9.44 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -2.37 Total: 8.17 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.60 Total: -35.10 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.64 Total: -41.52 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.90 -5.63 -40.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582144.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.630 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds