Wall clock time and date at job start Tue Mar 31 2020 07:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86803 * 119.99850 * 2 1 4 4 H 1.48510 * 109.47148 * 239.99922 * 3 2 1 5 5 H 1.48499 * 109.47211 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00234 * 3 2 1 7 7 C 1.40121 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.46202 * 120.00108 * 359.97438 * 7 2 1 10 10 O 1.21726 * 119.99425 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00170 * 179.97438 * 9 7 2 12 12 C 1.39071 * 119.99977 * 185.27935 * 11 9 7 13 13 C 1.39272 * 119.93249 * 213.94198 * 12 11 9 14 14 C 1.37614 * 120.06806 * 180.25894 * 13 12 11 15 15 C 1.39839 * 119.92694 * 359.44512 * 14 13 12 16 16 C 1.47460 * 120.06259 * 180.29959 * 15 14 13 17 17 O 1.21510 * 120.00249 * 0.02562 * 16 15 14 18 18 O 1.34752 * 119.99938 * 180.02562 * 16 15 14 19 19 C 1.45195 * 117.00253 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47593 * 179.97438 * 19 18 16 21 21 O 1.20832 * 119.99859 * 359.97438 * 20 19 18 22 22 O 1.34232 * 120.00333 * 179.97438 * 20 19 18 23 23 C 1.39831 * 119.86816 * 0.27906 * 15 14 13 24 24 C 1.37607 * 119.93139 * 0.02562 * 23 15 14 25 25 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00147 * 5.27717 * 11 9 7 27 27 H 1.08001 * 119.96621 * 0.02562 * 13 12 11 28 28 H 1.07993 * 120.03176 * 179.71858 * 14 13 12 29 29 H 1.09004 * 109.46827 * 299.99847 * 19 18 16 30 30 H 1.09002 * 109.47351 * 59.99670 * 19 18 16 31 31 H 0.96697 * 116.99697 * 179.97438 * 22 20 19 32 32 H 1.08004 * 120.03444 * 180.02562 * 23 15 14 33 33 H 1.08003 * 119.96737 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6965 -1.2126 5 1 1.2754 2.7465 -0.0006 6 1 3.0942 1.6965 1.2125 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2134 -0.0010 9 6 1.2761 -2.4796 -0.0005 10 8 0.0588 -2.4796 0.0004 11 7 1.9499 -3.6468 -0.0016 12 6 1.2589 -4.8486 -0.1124 13 6 1.7258 -5.9821 0.5485 14 6 1.0472 -7.1741 0.4364 15 6 -0.1187 -7.2435 -0.3326 16 6 -0.8519 -8.5175 -0.4493 17 8 -0.4434 -9.5083 0.1234 18 8 -1.9750 -8.5831 -1.1911 19 6 -2.6450 -9.8693 -1.2606 20 6 -3.8721 -9.7505 -2.1273 21 8 -4.1534 -8.6903 -2.6340 22 8 -4.6525 -10.8224 -2.3364 23 6 -0.5881 -6.1022 -0.9902 24 6 0.0984 -4.9148 -0.8794 25 1 -0.4850 0.8400 -0.0004 26 1 2.9169 -3.6486 0.0749 27 1 2.6234 -5.9266 1.1464 28 1 1.4122 -8.0538 0.9454 29 1 -1.9680 -10.6090 -1.6882 30 1 -2.9375 -10.1813 -0.2580 31 1 -5.4288 -10.6971 -2.8991 32 1 -1.4885 -6.1527 -1.5845 33 1 -0.2639 -4.0328 -1.3868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605582144.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:52 Heat of formation + Delta-G solvation = -208.336014 kcal Electronic energy + Delta-G solvation = -21861.972495 eV Core-core repulsion = 18044.971645 eV Total energy + Delta-G solvation = -3817.000850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92329 -41.17133 -40.64572 -38.74396 -37.66403 -37.08638 -35.43321 -34.57850 -32.04048 -31.48256 -30.16814 -28.40066 -25.24185 -23.78646 -23.17009 -22.32614 -21.45333 -19.63403 -19.47227 -18.76145 -18.34314 -17.99519 -17.98709 -17.55934 -17.08851 -16.58121 -16.16963 -15.73406 -15.43239 -14.88728 -14.81623 -14.52699 -14.41732 -14.21142 -13.84951 -13.51178 -13.42843 -13.13020 -12.76815 -12.73793 -12.69329 -12.20806 -12.08287 -12.00726 -11.85996 -11.67499 -11.16924 -10.90291 -10.12885 -9.85204 -8.96204 -8.39191 -6.97445 -0.30931 0.44908 0.97245 1.01117 1.37365 1.41153 1.47726 1.56078 2.19905 2.28335 2.35127 2.77432 2.87740 3.53651 3.63188 3.88078 3.96913 3.99813 4.02985 4.14552 4.35616 4.46702 4.65550 4.93982 5.06685 5.23993 5.27607 5.31057 5.38912 5.48625 5.67101 5.77121 6.12345 6.23865 6.56132 6.75745 6.85912 7.25452 8.29356 8.53632 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.002929 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.577545 B = 9557.779112 C =10452.519699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.561 4.561 8 H 0.097 0.903 9 C 0.526 3.474 10 O -0.602 6.602 11 N -0.687 5.687 12 C 0.210 3.790 13 C -0.175 4.175 14 C -0.016 4.016 15 C -0.186 4.186 16 C 0.534 3.466 17 O -0.522 6.522 18 O -0.350 6.350 19 C 0.068 3.932 20 C 0.493 3.507 21 O -0.538 6.538 22 O -0.497 6.497 23 C -0.033 4.033 24 C -0.172 4.172 25 H 0.278 0.722 26 H 0.414 0.586 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.438 0.562 32 H 0.137 0.863 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -18.038 -2.003 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.176 1.176 7 C -0.597 4.597 8 H 0.115 0.885 9 C 0.334 3.666 10 O -0.487 6.487 11 N -0.330 5.330 12 C 0.110 3.890 13 C -0.196 4.196 14 C -0.035 4.035 15 C -0.188 4.188 16 C 0.381 3.619 17 O -0.413 6.413 18 O -0.267 6.267 19 C -0.006 4.006 20 C 0.335 3.665 21 O -0.427 6.427 22 O -0.312 6.312 23 C -0.052 4.052 24 C -0.193 4.193 25 H 0.088 0.912 26 H 0.250 0.750 27 H 0.180 0.820 28 H 0.179 0.821 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.302 0.698 32 H 0.155 0.845 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.076 -17.912 -1.758 18.031 hybrid contribution -0.247 0.988 -0.486 1.129 sum -1.323 -16.924 -2.243 17.123 Atomic orbital electron populations 1.70133 1.09591 1.29563 1.34712 1.27015 0.95543 1.05076 0.91121 0.85008 0.78167 0.74385 0.80441 1.17743 1.20092 1.17595 1.21406 0.95193 0.89357 1.53713 0.88499 1.18781 0.87217 0.83748 0.76881 1.90625 1.15608 1.87016 1.55496 1.43798 1.10745 1.03868 1.74570 1.18535 0.92484 0.87043 0.90934 1.21103 1.04408 0.91234 1.02825 1.21157 0.90883 0.98076 0.93337 1.18917 0.99955 0.90882 1.09096 1.20939 0.77674 0.88595 0.74670 1.90809 1.67558 1.37363 1.45549 1.86561 1.38418 1.35962 1.65748 1.22336 0.91328 0.84452 1.02517 1.22705 0.83995 0.81232 0.78575 1.90816 1.72133 1.31030 1.48722 1.84393 1.40737 1.38207 1.67909 1.21258 0.97899 0.90630 0.95410 1.21117 0.98153 0.98129 1.01902 0.91159 0.74956 0.81986 0.82078 0.84289 0.84596 0.69818 0.84530 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.48 11.82 21.85 0.26 -47.22 16 2 C 0.03 1.54 5.50 85.33 0.47 2.01 16 3 Si 1.00 38.57 29.56 68.60 2.03 40.60 16 4 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.28 -10.40 7.11 99.48 0.71 -9.70 16 6 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.56 -29.71 9.54 24.80 0.24 -29.47 16 8 H 0.10 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.53 28.78 7.46 86.31 0.64 29.42 16 10 O -0.60 -38.14 12.69 -4.43 -0.06 -38.20 16 11 N -0.69 -29.19 5.30 -307.51 -1.63 -30.82 16 12 C 0.21 8.29 6.27 38.49 0.24 8.53 16 13 C -0.17 -5.24 9.94 22.37 0.22 -5.02 16 14 C -0.02 -0.44 9.58 22.51 0.22 -0.23 16 15 C -0.19 -5.82 5.88 -20.07 -0.12 -5.93 16 16 C 0.53 15.17 7.89 70.25 0.55 15.73 16 17 O -0.52 -14.99 16.13 19.80 0.32 -14.67 16 18 O -0.35 -9.36 8.99 -50.23 -0.45 -9.81 16 19 C 0.07 1.20 6.07 71.24 0.43 1.63 16 20 C 0.49 9.22 8.41 71.24 0.60 9.82 16 21 O -0.54 -15.26 17.26 28.31 0.49 -14.77 16 22 O -0.50 -5.34 13.42 -51.44 -0.69 -6.03 16 23 C -0.03 -1.18 9.60 22.51 0.22 -0.96 16 24 C -0.17 -7.32 8.62 22.37 0.19 -7.13 16 25 H 0.28 14.81 8.29 -92.71 -0.77 14.04 16 26 H 0.41 14.24 8.79 -92.71 -0.82 13.43 16 27 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 28 H 0.16 3.63 7.64 -2.91 -0.02 3.61 16 29 H 0.14 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.44 1.11 9.10 -74.06 -0.67 0.43 16 32 H 0.14 4.68 7.60 -2.91 -0.02 4.66 16 33 H 0.11 5.38 6.41 -2.91 -0.02 5.36 16 Total: -1.00 -79.65 311.28 3.89 -75.77 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.29 Total: 26.77 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 3.91 Total: 18.39 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.37 Total: -78.05 kcal Atomic # 8 Polarization: -83.09 SS G_CDS: -0.39 Total: -83.48 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -79.65 3.89 -75.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582144.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.570 kcal (2) G-P(sol) polarization free energy of solvation -79.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds