Wall clock time and date at job start Tue Mar 31 2020 07:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48499 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47273 * 300.00020 * 3 2 1 6 6 H 1.48506 * 109.47091 * 60.00035 * 3 2 1 7 7 C 1.37876 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99550 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46675 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46935 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00139 * 180.02562 * 11 10 9 13 13 O 1.21669 * 119.99799 * 359.97438 * 12 11 10 14 14 C 1.46971 * 120.00574 * 179.97438 * 12 11 10 15 15 C 1.39528 * 123.12959 * 5.58285 * 14 12 11 16 16 C 1.32805 * 115.17671 * 180.02562 * 15 14 12 17 17 S 1.75723 * 110.49883 * 359.72768 * 16 15 14 18 18 C 1.37666 * 123.13637 * 185.57543 * 14 12 11 19 19 C 1.47735 * 125.37794 * 0.02562 * 18 14 12 20 20 N 1.34254 * 126.71179 * 48.25600 * 19 18 14 21 21 N 1.28973 * 107.24531 * 179.97438 * 20 19 18 22 22 N 1.28718 * 109.01342 * 0.02562 * 21 20 19 23 23 H 0.96995 * 125.30947 * 179.97438 * 22 21 20 24 24 N 1.28866 * 109.37750 * 0.02562 * 22 21 20 25 25 H 0.97004 * 120.00696 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47230 * 60.00115 * 9 7 2 27 27 H 1.09002 * 109.47251 * 299.99826 * 9 7 2 28 28 H 1.09000 * 109.47140 * 60.00130 * 10 9 7 29 29 H 1.09002 * 109.47196 * 299.99929 * 10 9 7 30 30 H 0.97000 * 119.99953 * 0.02562 * 11 10 9 31 31 H 1.08000 * 122.41224 * 359.97438 * 15 14 12 32 32 H 1.07993 * 124.75139 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9307 0.0020 12 6 2.1868 -6.0979 0.0024 13 8 3.4035 -6.0979 0.0019 14 6 1.4521 -7.3708 0.0035 15 6 0.0636 -7.4500 -0.1096 16 6 -0.4355 -8.6805 -0.0902 17 16 0.8528 -9.8647 0.0696 18 6 2.0696 -8.5960 0.1159 19 6 3.5251 -8.8113 0.2495 20 7 4.3553 -8.1808 1.0955 21 7 5.5374 -8.6568 0.8970 22 7 5.4801 -9.5490 -0.0290 23 1 6.2347 -10.0573 -0.3653 24 7 4.2640 -9.6608 -0.4405 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8727 -3.6039 0.8909 29 1 2.8714 -3.6047 -0.8891 30 1 0.5429 -4.9308 0.0020 31 1 -0.5603 -6.5736 -0.2050 32 1 -1.4858 -8.9200 -0.1663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606347867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:04 Heat of formation + Delta-G solvation = 121.891108 kcal Electronic energy + Delta-G solvation = -19981.338098 eV Core-core repulsion = 16685.995344 eV Total energy + Delta-G solvation = -3295.342754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.37844 -39.70073 -37.08233 -34.92236 -34.25266 -33.43400 -32.77358 -29.97740 -29.52597 -26.20523 -24.51421 -24.34162 -22.83098 -21.61605 -20.86945 -19.71841 -18.74160 -18.03968 -17.06530 -16.43922 -16.33779 -15.33093 -14.95511 -14.52526 -14.41805 -14.10765 -13.87854 -13.44767 -13.10622 -12.83594 -12.60914 -12.27089 -12.14873 -11.32380 -11.27325 -11.15433 -11.11369 -11.02863 -10.75266 -10.60538 -10.30996 -9.78628 -9.46323 -9.18497 -8.95787 -8.81445 -8.49493 -8.29933 -6.07679 -4.10018 0.19713 0.94459 1.19748 1.55002 1.90378 2.15530 2.39379 3.30113 3.37611 3.42843 3.56756 3.64690 3.80928 4.43726 4.47599 4.71046 4.98990 5.15417 5.24288 5.29690 5.50103 5.72430 5.82856 5.95675 6.34322 6.38427 6.39793 6.77439 6.93149 7.54190 7.64125 7.90965 8.02187 8.18880 8.30066 8.66008 8.96176 9.54798 11.04010 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.003543 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.913166 B = 7901.591084 C = 9120.618290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.124 3.876 11 N -0.712 5.712 12 C 0.559 3.441 13 O -0.526 6.526 14 C -0.097 4.097 15 C -0.113 4.113 16 C -0.207 4.207 17 S 0.187 5.813 18 C -0.073 4.073 19 C 0.247 3.753 20 N -0.211 5.211 21 N -0.052 5.052 22 N -0.233 5.233 23 H 0.473 0.527 24 N -0.292 5.292 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.397 0.603 31 H 0.156 0.844 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -23.605 -0.921 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.362 5.362 12 C 0.342 3.658 13 O -0.403 6.403 14 C -0.117 4.117 15 C -0.143 4.143 16 C -0.343 4.343 17 S 0.453 5.547 18 C -0.196 4.196 19 C -0.035 4.035 20 N -0.085 5.085 21 N -0.048 5.048 22 N -0.078 5.078 23 H 0.327 0.673 24 N -0.145 5.145 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.231 0.769 31 H 0.174 0.826 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.122 -24.948 -0.588 25.045 hybrid contribution -0.178 2.163 -0.585 2.247 sum 1.944 -22.785 -1.172 22.898 Atomic orbital electron populations 1.69961 1.06072 1.26734 1.50579 1.24986 0.94883 0.99383 0.95013 0.86469 0.80211 0.83376 0.77593 1.19579 1.20966 1.20926 1.21092 0.93308 0.90359 1.51085 0.92186 1.19338 0.94224 0.91107 0.97875 1.21751 0.96034 0.81092 1.00976 1.46175 1.10420 1.06223 1.73426 1.17504 0.87238 0.83033 0.78035 1.90834 1.12865 1.87256 1.49345 1.19650 0.93659 0.93520 1.04871 1.20100 0.93186 0.98846 1.02118 1.25596 1.03434 0.95826 1.09474 1.84155 0.94111 1.07198 1.69238 1.21566 0.90732 0.96677 1.10615 1.22043 0.93979 0.93364 0.94079 1.76386 0.94222 1.17908 1.19996 1.78966 1.18168 1.01960 1.05715 1.47621 1.07987 1.27376 1.24812 0.67295 1.74988 0.91927 1.24278 1.23322 0.92926 0.95929 0.95828 0.92242 0.92531 0.76918 0.82620 0.80531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.68 5.61 -4.04 -0.02 2.65 16 11 N -0.71 -12.79 5.53 -61.52 -0.34 -13.13 16 12 C 0.56 10.21 7.76 -12.72 -0.10 10.11 16 13 O -0.53 -11.42 13.86 5.22 0.07 -11.35 16 14 C -0.10 -1.40 5.86 -106.09 -0.62 -2.02 16 15 C -0.11 -1.22 9.60 -40.97 -0.39 -1.61 16 16 C -0.21 -1.74 11.14 28.87 0.32 -1.42 16 17 S 0.19 1.77 23.29 -107.50 -2.50 -0.73 16 18 C -0.07 -1.02 6.53 -35.91 -0.23 -1.26 16 19 C 0.25 3.81 7.06 -156.23 -1.10 2.70 16 20 N -0.21 -3.65 10.69 32.06 0.34 -3.31 16 21 N -0.05 -0.75 13.46 60.35 0.81 0.06 16 22 N -0.23 -2.47 7.89 60.35 0.48 -2.00 16 23 H 0.47 2.41 8.96 -340.33 -3.05 -0.64 16 24 N -0.29 -3.79 12.41 32.07 0.40 -3.39 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.40 6.01 6.91 -40.82 -0.28 5.73 16 31 H 0.16 1.39 6.92 -52.49 -0.36 1.02 16 32 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -35.45 303.96 -8.50 -43.95 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.35 Total: -1.87 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.71 Total: -3.93 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 2.43 Total: -47.13 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.50 Total: -0.73 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.45 -8.50 -43.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.844 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds