Wall clock time and date at job start Tue Mar 31 2020 07:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48499 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47273 * 300.00020 * 3 2 1 6 6 H 1.48506 * 109.47091 * 60.00035 * 3 2 1 7 7 C 1.37876 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99550 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46675 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46935 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00139 * 180.02562 * 11 10 9 13 13 O 1.21669 * 119.99799 * 359.97438 * 12 11 10 14 14 C 1.46971 * 120.00574 * 179.97438 * 12 11 10 15 15 C 1.39528 * 123.12959 * 5.58285 * 14 12 11 16 16 C 1.32805 * 115.17671 * 180.02562 * 15 14 12 17 17 S 1.75723 * 110.49883 * 359.72768 * 16 15 14 18 18 C 1.37666 * 123.13637 * 185.57543 * 14 12 11 19 19 C 1.47735 * 125.37794 * 0.02562 * 18 14 12 20 20 N 1.34254 * 126.71179 * 48.25600 * 19 18 14 21 21 N 1.28973 * 107.24531 * 179.97438 * 20 19 18 22 22 N 1.28718 * 109.01342 * 0.02562 * 21 20 19 23 23 H 0.96995 * 125.30947 * 179.97438 * 22 21 20 24 24 N 1.28866 * 109.37750 * 0.02562 * 22 21 20 25 25 H 0.97004 * 120.00696 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47230 * 60.00115 * 9 7 2 27 27 H 1.09002 * 109.47251 * 299.99826 * 9 7 2 28 28 H 1.09000 * 109.47140 * 60.00130 * 10 9 7 29 29 H 1.09002 * 109.47196 * 299.99929 * 10 9 7 30 30 H 0.97000 * 119.99953 * 0.02562 * 11 10 9 31 31 H 1.08000 * 122.41224 * 359.97438 * 15 14 12 32 32 H 1.07993 * 124.75139 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9307 0.0020 12 6 2.1868 -6.0979 0.0024 13 8 3.4035 -6.0979 0.0019 14 6 1.4521 -7.3708 0.0035 15 6 0.0636 -7.4500 -0.1096 16 6 -0.4355 -8.6805 -0.0902 17 16 0.8528 -9.8647 0.0696 18 6 2.0696 -8.5960 0.1159 19 6 3.5251 -8.8113 0.2495 20 7 4.3553 -8.1808 1.0955 21 7 5.5374 -8.6568 0.8970 22 7 5.4801 -9.5490 -0.0290 23 1 6.2347 -10.0573 -0.3653 24 7 4.2640 -9.6608 -0.4405 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8727 -3.6039 0.8909 29 1 2.8714 -3.6047 -0.8891 30 1 0.5429 -4.9308 0.0020 31 1 -0.5603 -6.5736 -0.2050 32 1 -1.4858 -8.9200 -0.1663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606347867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:03 Heat of formation + Delta-G solvation = 94.866869 kcal Electronic energy + Delta-G solvation = -19982.509957 eV Core-core repulsion = 16685.995344 eV Total energy + Delta-G solvation = -3296.514613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.41803 -41.00576 -38.17435 -36.60869 -35.36342 -34.83020 -34.38383 -31.68196 -30.62157 -27.67200 -25.96631 -25.56365 -23.95887 -22.89373 -22.53608 -20.79285 -19.95570 -18.94589 -18.47909 -18.12868 -17.41757 -16.78285 -16.48568 -16.44084 -15.56388 -15.29982 -14.96400 -14.78615 -14.43287 -14.28706 -13.91452 -13.63896 -13.20807 -13.16486 -12.93847 -12.52182 -12.36278 -12.24422 -12.18666 -12.07208 -11.78252 -11.65014 -11.42887 -10.87284 -10.59517 -10.07435 -9.80104 -9.55029 -8.23191 -6.33081 -0.75625 0.02563 0.22598 0.78234 0.98403 1.16662 1.41275 1.42435 1.46683 1.55489 2.26408 2.34089 2.46315 2.70704 3.11588 3.42741 3.76954 4.05315 4.14872 4.32793 4.46770 4.49895 4.55045 4.85202 4.88240 5.05976 5.14522 5.28927 5.50236 5.59974 5.60991 5.79921 6.17599 6.61654 6.79627 7.12599 7.25541 7.35962 8.88838 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021192 B = 0.003543 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.913166 B = 7901.591084 C = 9120.618290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.144 3.856 11 N -0.707 5.707 12 C 0.555 3.445 13 O -0.566 6.566 14 C -0.116 4.116 15 C -0.130 4.130 16 C -0.182 4.182 17 S 0.254 5.746 18 C -0.109 4.109 19 C 0.232 3.768 20 N -0.259 5.259 21 N -0.065 5.065 22 N -0.201 5.201 23 H 0.494 0.506 24 N -0.287 5.287 25 H 0.266 0.734 26 H 0.012 0.988 27 H 0.011 0.989 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.411 0.589 31 H 0.171 0.829 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -25.075 -1.372 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.013 4.013 10 C 0.021 3.979 11 N -0.358 5.358 12 C 0.341 3.659 13 O -0.446 6.446 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.318 4.318 17 S 0.520 5.480 18 C -0.231 4.231 19 C -0.049 4.049 20 N -0.132 5.132 21 N -0.061 5.061 22 N -0.052 5.052 23 H 0.353 0.647 24 N -0.141 5.141 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.248 0.752 31 H 0.188 0.812 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.973 -26.448 -1.037 26.487 hybrid contribution 0.168 2.448 -0.481 2.500 sum 1.141 -24.000 -1.518 24.075 Atomic orbital electron populations 1.70051 1.07406 1.27928 1.51012 1.25823 0.95797 1.02911 0.94402 0.85425 0.78889 0.78929 0.77972 1.19248 1.20090 1.20136 1.21478 0.93490 0.92020 1.51527 0.92615 1.19134 0.94158 0.91465 0.96591 1.21216 0.95073 0.82006 0.99643 1.45936 1.11012 1.05152 1.73703 1.18105 0.87020 0.84135 0.76601 1.90804 1.14810 1.87974 1.51059 1.19458 0.95168 0.91579 1.07490 1.20162 0.91480 1.00612 1.03497 1.26121 1.05141 0.94539 1.05992 1.83953 0.92096 1.05092 1.66818 1.21960 0.91167 0.98460 1.11544 1.22412 0.94951 0.93487 0.94073 1.76339 0.95288 1.19595 1.21952 1.78866 1.17630 1.02818 1.06757 1.47682 1.08252 1.26012 1.23237 0.64676 1.74942 0.92326 1.23954 1.22924 0.92499 0.96961 0.97041 0.93764 0.93748 0.75230 0.81175 0.76334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 13.29 21.45 0.28 -53.86 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.22 5.09 29.85 0.15 1.38 16 10 C 0.14 6.49 5.61 86.38 0.48 6.97 16 11 N -0.71 -25.99 5.53 -466.79 -2.58 -28.57 16 12 C 0.56 20.86 7.76 86.53 0.67 21.53 16 13 O -0.57 -25.69 13.86 -4.25 -0.06 -25.74 16 14 C -0.12 -3.30 5.86 -20.81 -0.12 -3.43 16 15 C -0.13 -2.50 9.60 21.40 0.21 -2.29 16 16 C -0.18 -2.32 11.14 66.64 0.74 -1.58 16 17 S 0.25 4.03 23.29 -56.49 -1.32 2.72 16 18 C -0.11 -2.95 6.53 24.65 0.16 -2.78 16 19 C 0.23 7.17 7.06 137.02 0.97 8.14 16 20 N -0.26 -9.22 10.69 -52.49 -0.56 -9.78 16 21 N -0.07 -1.91 13.46 37.02 0.50 -1.41 16 22 N -0.20 -4.16 7.89 37.02 0.29 -3.87 16 23 H 0.49 4.47 8.96 -347.51 -3.11 1.35 16 24 N -0.29 -7.26 12.41 -52.44 -0.65 -7.91 16 25 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.04 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.04 2.08 8.14 -2.39 -0.02 2.07 16 30 H 0.41 12.52 6.91 -92.71 -0.64 11.88 16 31 H 0.17 2.65 6.92 -2.91 -0.02 2.63 16 32 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -78.81 303.96 -0.65 -79.47 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -2.55 Total: 4.69 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 3.96 Total: -1.87 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -2.72 Total: -105.40 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.06 Total: -25.74 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.32 Total: 2.72 kcal Total: -78.81 -0.65 -79.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.336 kcal (2) G-P(sol) polarization free energy of solvation -78.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds