Wall clock time and date at job start Tue Mar 31 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31369 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48498 * 109.47201 * 239.99991 * 3 2 1 5 5 H 1.48490 * 109.47374 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47086 * 120.00457 * 3 2 1 7 7 C 1.39041 * 119.99407 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99678 * 179.97438 * 7 2 1 9 9 N 1.36883 * 120.00557 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00412 * 180.02562 * 9 7 2 11 11 O 1.21598 * 120.00106 * 359.97438 * 10 9 7 12 12 C 1.47666 * 120.00276 * 180.02562 * 10 9 7 13 13 C 1.39512 * 120.10350 * 0.02562 * 12 10 9 14 14 C 1.38973 * 119.73980 * 179.97438 * 13 12 10 15 15 C 1.48473 * 120.02322 * 179.97438 * 14 13 12 16 16 N 1.34042 * 126.67344 * 359.70447 * 15 14 13 17 17 N 1.28988 * 107.26397 * 179.84111 * 16 15 14 18 18 N 1.28726 * 108.94333 * 0.43091 * 17 16 15 19 19 H 0.97009 * 125.33863 * 179.74432 * 18 17 16 20 20 N 1.28863 * 109.31882 * 359.72770 * 18 17 16 21 21 C 1.39475 * 119.94748 * 0.02562 * 14 13 12 22 22 C 1.38075 * 120.21438 * 0.02562 * 21 14 13 23 23 C 1.38207 * 120.26218 * 359.97438 * 22 21 14 24 24 Cl 1.73599 * 119.97810 * 180.02562 * 23 22 21 25 25 H 0.97007 * 119.99389 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99165 * 0.02562 * 9 7 2 27 27 H 1.07991 * 120.12841 * 359.97438 * 13 12 10 28 28 H 1.08008 * 119.89397 * 180.27618 * 21 14 13 29 29 H 1.07996 * 119.86792 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6963 -1.2125 5 1 1.2828 2.7464 0.0006 6 1 3.1016 1.6963 1.2125 7 6 2.0088 -1.2042 -0.0005 8 1 3.0887 -1.2043 -0.0010 9 7 1.3243 -2.3896 -0.0005 10 6 1.9981 -3.5568 -0.0005 11 8 3.2141 -3.5569 -0.0010 12 6 1.2597 -4.8356 -0.0011 13 6 -0.1354 -4.8381 -0.0022 14 6 -0.8226 -6.0460 -0.0033 15 6 -2.3073 -6.0560 -0.0038 16 7 -3.1151 -4.9863 0.0021 17 7 -4.3288 -5.4231 -0.0043 18 7 -4.3097 -6.7102 -0.0047 19 1 -5.0926 -7.2830 -0.0054 20 7 -3.0874 -7.1185 -0.0044 21 6 -0.1165 -7.2488 -0.0027 22 6 1.2642 -7.2440 -0.0006 23 6 1.9565 -6.0479 0.0005 24 17 3.6925 -6.0504 0.0025 25 1 -0.4849 0.8402 0.0004 26 1 0.3543 -2.3895 -0.0005 27 1 -0.6791 -3.9051 -0.0022 28 1 -0.6515 -8.1871 -0.0081 29 1 1.8053 -8.1786 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606350066.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:15 Heat of formation + Delta-G solvation = 115.887068 kcal Electronic energy + Delta-G solvation = -19905.502919 eV Core-core repulsion = 16472.023009 eV Total energy + Delta-G solvation = -3433.479910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.042 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.47398 -39.47257 -37.50552 -35.97965 -34.38747 -34.04615 -33.43622 -31.73330 -30.62969 -30.17464 -25.49041 -24.69560 -24.31340 -22.96002 -21.64228 -19.65630 -19.13545 -18.18320 -17.16184 -17.01252 -16.03223 -15.29202 -15.01006 -14.55438 -14.12307 -13.94438 -13.74428 -13.70323 -12.77715 -12.68599 -12.39995 -11.82744 -11.69576 -11.64125 -11.44912 -11.33086 -11.11561 -11.08088 -10.56571 -10.45828 -10.37386 -10.28486 -9.60463 -8.82711 -8.33642 -8.21303 -8.05825 -6.55327 -3.86208 0.64282 1.12961 1.25310 2.17655 2.28553 2.60541 3.17467 3.22560 3.26645 3.54950 3.65641 4.07967 4.17787 4.37865 4.72765 4.96688 5.09976 5.24376 5.28506 5.38499 5.52430 5.61015 5.90792 6.06863 6.18511 6.31813 6.39540 6.56904 6.77669 7.43193 7.94508 8.12826 8.50201 9.06232 9.40806 9.97840 10.60599 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.005645 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.392418 B = 4958.764363 C = 7215.313374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.024 3.976 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.290 4.290 8 H 0.110 0.890 9 N -0.538 5.538 10 C 0.458 3.542 11 O -0.574 6.574 12 C -0.089 4.089 13 C -0.051 4.051 14 C -0.026 4.026 15 C 0.227 3.773 16 N -0.258 5.258 17 N -0.050 5.050 18 N -0.232 5.232 19 H 0.473 0.527 20 N -0.299 5.299 21 C -0.073 4.073 22 C -0.123 4.123 23 C 0.016 3.984 24 Cl -0.031 7.031 25 H 0.278 0.722 26 H 0.394 0.606 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 -14.922 -0.014 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.420 4.420 8 H 0.127 0.873 9 N -0.173 5.173 10 C 0.245 3.755 11 O -0.459 6.459 12 C -0.094 4.094 13 C -0.073 4.073 14 C -0.029 4.029 15 C -0.053 4.053 16 N -0.131 5.131 17 N -0.045 5.045 18 N -0.078 5.078 19 H 0.327 0.673 20 N -0.150 5.150 21 C -0.095 4.095 22 C -0.141 4.141 23 C -0.013 4.013 24 Cl -0.001 7.001 25 H 0.088 0.912 26 H 0.229 0.771 27 H 0.165 0.835 28 H 0.156 0.844 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.332 -14.398 -0.011 16.157 hybrid contribution -0.382 0.219 -0.001 0.441 sum -7.714 -14.179 -0.012 16.141 Atomic orbital electron populations 1.69600 1.06103 1.29001 1.47355 1.25416 0.95701 1.00146 0.96780 0.85834 0.78814 0.79860 0.79316 1.19622 1.20778 1.19627 1.19813 0.93778 0.81982 1.46434 0.87260 1.41941 1.09553 1.04713 1.61051 1.17425 0.87655 0.82804 0.87595 1.90704 1.12282 1.86288 1.56669 1.20178 0.92578 0.94949 1.01679 1.21422 0.92727 0.97902 0.95236 1.17113 0.84326 0.94503 1.06980 1.23653 0.96335 0.84230 1.01054 1.76224 0.94422 1.25352 1.17062 1.78959 1.17312 0.93557 1.14659 1.47719 1.07510 1.06063 1.46468 0.67268 1.74874 0.90711 1.26807 1.22649 1.21018 0.93220 0.97063 0.98154 1.20862 0.93558 0.96839 1.02880 1.21139 0.86699 0.93455 1.00032 1.98395 1.07134 1.98711 1.95907 0.91235 0.77116 0.83493 0.84432 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.41 13.05 55.50 0.72 -22.69 15 2 C 0.02 0.62 5.50 -17.45 -0.10 0.53 15 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.29 -7.92 9.68 -15.00 -0.15 -8.07 15 8 H 0.11 3.08 7.15 -52.49 -0.38 2.71 15 9 N -0.54 -13.69 5.23 -11.89 -0.06 -13.76 15 10 C 0.46 11.10 7.71 -12.41 -0.10 11.00 15 11 O -0.57 -15.32 13.52 5.28 0.07 -15.25 15 12 C -0.09 -1.76 5.87 -104.98 -0.62 -2.37 15 13 C -0.05 -0.90 9.19 -38.83 -0.36 -1.25 15 14 C -0.03 -0.39 5.87 -104.94 -0.62 -1.00 15 15 C 0.23 3.30 7.93 -156.31 -1.24 2.06 15 16 N -0.26 -4.07 12.22 32.16 0.39 -3.68 15 17 N -0.05 -0.64 13.47 60.35 0.81 0.17 15 18 N -0.23 -2.16 7.90 60.35 0.48 -1.68 15 19 H 0.47 1.86 8.96 -340.36 -3.05 -1.20 15 20 N -0.30 -3.52 12.07 32.17 0.39 -3.13 15 21 C -0.07 -0.94 9.69 -39.18 -0.38 -1.32 15 22 C -0.12 -1.65 9.80 -39.65 -0.39 -2.03 15 23 C 0.02 0.29 6.36 -39.00 -0.25 0.04 15 24 Cl -0.03 -0.57 26.00 -51.86 -1.35 -1.91 15 25 H 0.28 6.96 8.31 -40.82 -0.34 6.62 15 26 H 0.39 9.63 5.92 -40.82 -0.24 9.39 15 27 H 0.15 2.70 6.22 -52.49 -0.33 2.38 15 28 H 0.14 1.39 7.87 -52.48 -0.41 0.98 15 29 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -31.90 284.43 -7.43 -39.33 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.97 Total: 5.27 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -4.18 Total: -2.42 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 2.73 Total: -44.76 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.07 Total: -15.25 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.35 Total: -1.91 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.90 -7.43 -39.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350066.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.214 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds