Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31369 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48498 * 109.47201 * 239.99991 * 3 2 1 5 5 H 1.48490 * 109.47374 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47086 * 120.00457 * 3 2 1 7 7 C 1.39041 * 119.99407 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99678 * 179.97438 * 7 2 1 9 9 N 1.36883 * 120.00557 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00412 * 180.02562 * 9 7 2 11 11 O 1.21598 * 120.00106 * 359.97438 * 10 9 7 12 12 C 1.47666 * 120.00276 * 180.02562 * 10 9 7 13 13 C 1.39512 * 120.10350 * 0.02562 * 12 10 9 14 14 C 1.38973 * 119.73980 * 179.97438 * 13 12 10 15 15 C 1.48473 * 120.02322 * 179.97438 * 14 13 12 16 16 N 1.34042 * 126.67344 * 359.70447 * 15 14 13 17 17 N 1.28988 * 107.26397 * 179.84111 * 16 15 14 18 18 N 1.28726 * 108.94333 * 0.43091 * 17 16 15 19 19 H 0.97009 * 125.33863 * 179.74432 * 18 17 16 20 20 N 1.28863 * 109.31882 * 359.72770 * 18 17 16 21 21 C 1.39475 * 119.94748 * 0.02562 * 14 13 12 22 22 C 1.38075 * 120.21438 * 0.02562 * 21 14 13 23 23 C 1.38207 * 120.26218 * 359.97438 * 22 21 14 24 24 Cl 1.73599 * 119.97810 * 180.02562 * 23 22 21 25 25 H 0.97007 * 119.99389 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99165 * 0.02562 * 9 7 2 27 27 H 1.07991 * 120.12841 * 359.97438 * 13 12 10 28 28 H 1.08008 * 119.89397 * 180.27618 * 21 14 13 29 29 H 1.07996 * 119.86792 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6963 -1.2125 5 1 1.2828 2.7464 0.0006 6 1 3.1016 1.6963 1.2125 7 6 2.0088 -1.2042 -0.0005 8 1 3.0887 -1.2043 -0.0010 9 7 1.3243 -2.3896 -0.0005 10 6 1.9981 -3.5568 -0.0005 11 8 3.2141 -3.5569 -0.0010 12 6 1.2597 -4.8356 -0.0011 13 6 -0.1354 -4.8381 -0.0022 14 6 -0.8226 -6.0460 -0.0033 15 6 -2.3073 -6.0560 -0.0038 16 7 -3.1151 -4.9863 0.0021 17 7 -4.3288 -5.4231 -0.0043 18 7 -4.3097 -6.7102 -0.0047 19 1 -5.0926 -7.2830 -0.0054 20 7 -3.0874 -7.1185 -0.0044 21 6 -0.1165 -7.2488 -0.0027 22 6 1.2642 -7.2440 -0.0006 23 6 1.9565 -6.0479 0.0005 24 17 3.6925 -6.0504 0.0025 25 1 -0.4849 0.8402 0.0004 26 1 0.3543 -2.3895 -0.0005 27 1 -0.6791 -3.9051 -0.0022 28 1 -0.6515 -8.1871 -0.0081 29 1 1.8053 -8.1786 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606350066.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = 92.769959 kcal Electronic energy + Delta-G solvation = -19906.505352 eV Core-core repulsion = 16472.023009 eV Total energy + Delta-G solvation = -3434.482343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.042 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.47902 -40.97635 -39.20511 -37.36205 -36.01638 -35.40752 -34.54565 -33.53390 -32.15068 -31.39634 -27.29431 -25.84898 -25.48821 -24.37927 -22.89410 -21.20936 -20.35986 -19.90263 -18.57004 -18.15010 -17.42970 -16.84377 -16.42762 -16.24017 -15.65243 -15.57192 -15.25797 -14.93146 -14.37775 -14.21106 -13.53850 -13.48952 -13.09609 -12.96511 -12.88572 -12.71222 -12.39450 -12.37377 -12.15285 -12.11544 -11.91110 -11.63144 -11.52170 -10.16331 -10.10322 -10.03901 -9.60703 -8.50654 -5.94818 -0.54986 -0.10776 0.15211 1.11555 1.23545 1.42229 1.42966 1.44508 1.54445 2.09008 2.28239 2.56959 2.71113 3.00793 3.17402 3.30822 3.72368 3.88303 4.04543 4.22492 4.23900 4.42101 4.52490 4.76284 4.96468 5.08323 5.21195 5.38791 5.54830 5.64025 5.95167 6.53467 7.06831 7.11062 7.46885 8.03868 8.65991 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.005645 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.392418 B = 4958.764363 C = 7215.313374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.331 4.331 8 H 0.088 0.912 9 N -0.554 5.554 10 C 0.461 3.539 11 O -0.602 6.602 12 C -0.120 4.120 13 C -0.052 4.052 14 C -0.023 4.023 15 C 0.210 3.790 16 N -0.299 5.299 17 N -0.057 5.057 18 N -0.195 5.195 19 H 0.496 0.504 20 N -0.278 5.278 21 C -0.040 4.040 22 C -0.104 4.104 23 C 0.008 3.992 24 Cl -0.044 7.044 25 H 0.281 0.719 26 H 0.395 0.605 27 H 0.130 0.870 28 H 0.181 0.819 29 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 -17.829 -0.018 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.461 4.461 8 H 0.106 0.894 9 N -0.190 5.190 10 C 0.249 3.751 11 O -0.489 6.489 12 C -0.124 4.124 13 C -0.074 4.074 14 C -0.027 4.027 15 C -0.070 4.070 16 N -0.171 5.171 17 N -0.052 5.052 18 N -0.046 5.046 19 H 0.356 0.644 20 N -0.131 5.131 21 C -0.061 4.061 22 C -0.122 4.122 23 C -0.021 4.021 24 Cl -0.015 7.015 25 H 0.091 0.909 26 H 0.230 0.770 27 H 0.147 0.853 28 H 0.198 0.802 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.815 -17.335 -0.014 19.447 hybrid contribution -0.098 0.749 0.000 0.755 sum -8.913 -16.586 -0.014 18.829 Atomic orbital electron populations 1.69674 1.07073 1.29838 1.48375 1.26186 0.96542 1.02720 0.95801 0.84916 0.77744 0.76104 0.79161 1.19430 1.19410 1.19440 1.19762 0.93143 0.83542 1.49614 0.89378 1.41938 1.09490 1.04811 1.62739 1.18192 0.87642 0.84053 0.85166 1.90658 1.13825 1.87280 1.57186 1.19817 0.93347 0.93502 1.05726 1.21222 0.91827 0.98672 0.95696 1.17203 0.85041 0.94253 1.06193 1.23523 0.96185 0.84686 1.02571 1.76227 0.95474 1.26807 1.18593 1.78915 1.16347 0.94713 1.15204 1.47808 1.07840 1.05572 1.43408 0.64389 1.74817 0.91067 1.25562 1.21661 1.21503 0.92883 0.97619 0.94058 1.21295 0.93826 0.96704 1.00365 1.21405 0.86207 0.94052 1.00456 1.98391 1.08339 1.98724 1.96020 0.90913 0.76998 0.85267 0.80189 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.03 13.05 21.68 0.28 -49.75 15 2 C -0.01 -0.61 5.50 84.95 0.47 -0.14 15 3 Si 1.00 43.15 29.55 68.60 2.03 45.17 15 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 7 C -0.33 -19.10 9.68 84.10 0.81 -18.29 15 8 H 0.09 5.31 7.15 -2.91 -0.02 5.29 15 9 N -0.55 -29.92 5.23 -309.79 -1.62 -31.54 15 10 C 0.46 23.43 7.71 86.74 0.67 24.10 15 11 O -0.60 -33.61 13.52 -4.02 -0.05 -33.67 15 12 C -0.12 -4.79 5.87 -20.10 -0.12 -4.91 15 13 C -0.05 -1.85 9.19 22.75 0.21 -1.65 15 14 C -0.02 -0.65 5.87 -20.07 -0.12 -0.77 15 15 C 0.21 5.61 7.93 137.39 1.09 6.70 15 16 N -0.30 -9.16 12.22 -52.18 -0.64 -9.80 15 17 N -0.06 -1.36 13.47 37.02 0.50 -0.86 15 18 N -0.19 -2.95 7.90 37.02 0.29 -2.66 15 19 H 0.50 1.89 8.96 -347.53 -3.12 -1.23 15 20 N -0.28 -5.46 12.07 -52.13 -0.63 -6.09 15 21 C -0.04 -0.84 9.69 22.53 0.22 -0.62 15 22 C -0.10 -2.36 9.80 22.22 0.22 -2.14 15 23 C 0.01 0.27 6.36 22.65 0.14 0.41 15 24 Cl -0.04 -1.59 26.00 -2.72 -0.07 -1.66 15 25 H 0.28 14.43 8.31 -92.70 -0.77 13.66 15 26 H 0.39 20.63 5.92 -92.70 -0.55 20.08 15 27 H 0.13 5.02 6.22 -2.92 -0.02 5.01 15 28 H 0.18 2.38 7.87 -2.91 -0.02 2.36 15 29 H 0.18 2.70 8.06 -2.91 -0.02 2.67 15 Total: -1.00 -73.35 284.43 1.28 -72.07 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -2.40 Total: 16.07 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 3.59 Total: 2.71 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -1.81 Total: -100.69 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.05 Total: -33.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.07 Total: -1.66 kcal Total: -73.35 1.28 -72.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350066.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.836 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds