Wall clock time and date at job start Tue Mar 31 2020 07:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47001 * 299.99871 * 3 2 1 6 6 H 1.48490 * 109.47065 * 59.99694 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99842 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46858 * 60.00066 * 9 7 2 11 11 N 1.46898 * 109.46773 * 180.02562 * 9 7 2 12 12 C 1.46897 * 110.99632 * 205.00074 * 11 9 7 13 13 C 1.50699 * 109.47211 * 180.02562 * 12 11 9 14 14 C 1.40308 * 126.64895 * 260.02265 * 13 12 11 15 15 C 1.35166 * 107.12758 * 179.69955 * 14 13 12 16 16 O 1.33911 * 108.78467 * 0.26139 * 15 14 13 17 17 C 1.34945 * 109.37825 * 0.02562 * 16 15 14 18 18 C 1.46469 * 125.99388 * 180.02562 * 17 16 15 19 19 O 1.21627 * 119.99503 * 179.97438 * 18 17 16 20 20 O 1.34888 * 120.00460 * 359.96773 * 18 17 16 21 21 C 1.53001 * 109.47076 * 300.00552 * 9 7 2 22 22 F 1.39907 * 109.47023 * 300.00010 * 21 9 7 23 23 F 1.39894 * 109.47371 * 59.99812 * 21 9 7 24 24 F 1.39896 * 109.46981 * 180.02562 * 21 9 7 25 25 H 0.96996 * 119.99872 * 0.02562 * 1 2 3 26 26 H 1.00900 * 111.00052 * 328.95148 * 11 9 7 27 27 H 1.08996 * 109.47598 * 59.99834 * 12 11 9 28 28 H 1.09005 * 109.47407 * 300.00008 * 12 11 9 29 29 H 1.08002 * 126.43869 * 359.96804 * 14 13 12 30 30 H 1.07999 * 125.61489 * 180.28566 * 15 14 13 31 31 H 0.96699 * 117.00456 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 2.2057 -3.6157 -0.0005 12 6 1.6030 -4.8235 -0.5801 13 6 2.6094 -5.9450 -0.5626 14 6 3.3944 -6.3828 -1.6400 15 6 4.1595 -7.4010 -1.1873 16 8 3.8784 -7.6099 0.1052 17 6 2.9320 -6.7348 0.5048 18 6 2.3574 -6.6426 1.8488 19 8 1.5063 -5.8079 2.0903 20 8 2.7719 -7.4833 2.8188 21 6 0.3718 -2.5804 1.2490 22 9 1.1765 -2.5065 2.3911 23 9 -0.5373 -1.5171 1.2495 24 9 -0.3273 -3.7922 1.2492 25 1 -0.4850 0.8400 -0.0004 26 1 3.0540 -3.3661 -0.4864 27 1 1.3012 -4.6217 -1.6079 28 1 0.7295 -5.1105 0.0053 29 1 3.3913 -5.9791 -2.6417 30 1 4.8794 -7.9547 -1.7716 31 1 2.3633 -7.3844 3.6897 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608178667.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:53 Heat of formation + Delta-G solvation = -225.705031 kcal Electronic energy + Delta-G solvation = -24662.476717 eV Core-core repulsion = 20302.865949 eV Total energy + Delta-G solvation = -4359.610768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.22387 -47.84953 -47.57050 -43.72067 -40.80901 -37.86506 -36.99201 -35.16762 -33.78317 -31.42183 -29.90003 -26.61539 -26.35979 -24.64077 -22.69367 -22.58279 -21.06841 -19.46745 -19.08444 -18.68498 -18.51756 -18.32696 -17.57105 -17.29448 -16.83581 -16.62264 -16.06995 -15.82999 -15.29256 -14.85792 -14.78371 -14.57202 -14.43342 -14.26385 -14.14432 -13.96632 -13.85855 -13.70990 -13.66524 -12.91441 -12.74447 -12.55240 -12.49826 -12.45415 -11.97846 -11.72424 -11.33509 -10.85411 -10.65316 -9.71186 -9.31761 -8.17368 -6.44345 -0.14054 1.35722 1.42429 1.45378 1.52831 1.57467 1.88695 2.36512 2.42351 2.67608 2.99322 3.35005 3.65001 3.82243 3.96167 4.09116 4.25428 4.44482 4.46526 4.55710 4.64673 4.89249 4.94683 5.04901 5.34668 5.54542 5.56253 5.70913 5.91103 6.08017 6.53010 6.72410 6.97729 7.25686 8.75652 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.005653 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.598134 B = 4951.759784 C = 5594.653732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.013 3.987 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.197 3.803 10 H 0.021 0.979 11 N -0.668 5.668 12 C 0.109 3.891 13 C -0.076 4.076 14 C -0.232 4.232 15 C 0.032 3.968 16 O -0.160 6.160 17 C -0.080 4.080 18 C 0.557 3.443 19 O -0.495 6.495 20 O -0.507 6.507 21 C 0.437 3.563 22 F -0.206 7.206 23 F -0.160 7.160 24 F -0.216 7.216 25 H 0.265 0.735 26 H 0.352 0.648 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.182 0.818 30 H 0.267 0.733 31 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.702 -13.965 -3.156 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.191 4.191 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.589 4.589 8 H 0.096 0.904 9 C 0.085 3.915 10 H 0.039 0.961 11 N -0.301 5.301 12 C -0.020 4.020 13 C -0.078 4.078 14 C -0.251 4.251 15 C -0.038 4.038 16 O -0.054 6.054 17 C -0.131 4.131 18 C 0.401 3.599 19 O -0.384 6.384 20 O -0.321 6.321 21 C 0.382 3.618 22 F -0.188 7.188 23 F -0.141 7.141 24 F -0.198 7.198 25 H 0.075 0.925 26 H 0.172 0.828 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.199 0.801 30 H 0.283 0.717 31 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 7.426 -14.060 -2.582 16.109 hybrid contribution -0.611 1.302 0.043 1.439 sum 6.815 -12.758 -2.540 14.686 Atomic orbital electron populations 1.70535 1.07221 1.27624 1.45696 1.25951 0.95895 1.03440 0.93842 0.85231 0.79025 0.78090 0.77682 1.18519 1.19744 1.21047 1.21222 0.93997 0.89173 1.54554 0.90381 1.19831 0.91352 0.91546 0.88721 0.96147 1.60064 1.07552 1.03093 1.59363 1.20614 0.95423 0.87771 0.98151 1.20647 0.98225 0.96075 0.92897 1.22073 1.00408 1.01322 1.01271 1.25462 0.99833 0.98013 0.80459 1.84140 1.45429 1.48256 1.27611 1.20395 1.00325 0.98936 0.93428 1.19042 0.79204 0.78203 0.83484 1.91162 1.30860 1.35272 1.81099 1.84573 1.65966 1.56889 1.24697 1.22587 0.79800 0.71848 0.87585 1.92964 1.74466 1.96079 1.55273 1.93350 1.69285 1.55039 1.96428 1.92981 1.81537 1.48277 1.96990 0.92486 0.82799 0.93350 0.90450 0.80078 0.71728 0.70467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.79 9.50 21.45 0.20 -49.59 16 2 C 0.01 0.71 5.20 84.65 0.44 1.15 16 3 Si 0.98 42.54 29.54 68.60 2.03 44.57 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.55 -29.54 8.33 25.60 0.21 -29.33 16 8 H 0.08 4.03 7.62 -2.91 -0.02 4.01 16 9 C 0.20 10.07 2.26 44.17 0.10 10.17 16 10 H 0.02 1.13 7.80 -2.39 -0.02 1.11 16 11 N -0.67 -28.95 6.21 -499.47 -3.10 -32.05 16 12 C 0.11 4.10 5.04 85.56 0.43 4.53 16 13 C -0.08 -2.33 5.71 -19.73 -0.11 -2.45 16 14 C -0.23 -4.89 10.83 22.07 0.24 -4.65 16 15 C 0.03 0.51 12.08 67.11 0.81 1.32 16 16 O -0.16 -3.90 10.67 -4.95 -0.05 -3.95 16 17 C -0.08 -2.49 7.18 24.04 0.17 -2.32 16 18 C 0.56 18.50 8.30 69.97 0.58 19.08 16 19 O -0.50 -20.35 15.12 19.42 0.29 -20.06 16 20 O -0.51 -12.61 13.44 -56.65 -0.76 -13.37 16 21 C 0.44 23.86 2.81 71.98 0.20 24.06 16 22 F -0.21 -11.56 16.94 44.97 0.76 -10.80 16 23 F -0.16 -9.35 12.91 44.97 0.58 -8.77 16 24 F -0.22 -11.22 14.39 44.97 0.65 -10.58 16 25 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 26 H 0.35 14.15 8.22 -89.69 -0.74 13.41 16 27 H 0.05 1.69 8.06 -2.39 -0.02 1.67 16 28 H 0.08 3.31 4.88 -2.38 -0.01 3.30 16 29 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.27 1.04 8.06 -2.91 -0.02 1.01 16 31 H 0.43 6.71 9.11 -74.06 -0.67 6.03 16 Total: -1.00 -72.27 287.89 3.49 -68.77 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -0.18 Total: 14.27 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 3.08 Total: 21.56 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -2.90 Total: -81.64 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.52 Total: -37.38 kcal Atomic # 9 Polarization: -32.13 SS G_CDS: 1.99 Total: -30.14 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -72.27 3.49 -68.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178667.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.931 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds