Wall clock time and date at job start Tue Mar 31 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00053 * 2 1 4 4 H 1.48497 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47398 * 300.00347 * 3 2 1 6 6 H 1.48507 * 109.46659 * 60.00331 * 3 2 1 7 7 C 1.37877 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00283 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46989 * 300.00743 * 9 7 2 11 11 N 1.46892 * 109.47560 * 180.02562 * 9 7 2 12 12 C 1.46899 * 111.00281 * 155.00434 * 11 9 7 13 13 C 1.50706 * 109.46968 * 180.02562 * 12 11 9 14 14 C 1.40310 * 126.64742 * 259.96585 * 13 12 11 15 15 C 1.35162 * 107.12835 * 180.02562 * 14 13 12 16 16 O 1.33912 * 108.78182 * 0.02562 * 15 14 13 17 17 C 1.34944 * 109.37917 * 359.97438 * 16 15 14 18 18 C 1.46469 * 125.99384 * 179.74165 * 17 16 15 19 19 O 1.21625 * 119.99921 * 180.02562 * 18 17 16 20 20 O 1.34896 * 119.99962 * 0.02562 * 18 17 16 21 21 C 1.53006 * 109.46889 * 60.00078 * 9 7 2 22 22 F 1.39897 * 109.47141 * 180.02562 * 21 9 7 23 23 F 1.39900 * 109.47179 * 300.00480 * 21 9 7 24 24 F 1.39901 * 109.46961 * 60.00214 * 21 9 7 25 25 H 0.97004 * 120.00179 * 359.97438 * 1 2 3 26 26 H 1.00911 * 110.99769 * 278.95525 * 11 9 7 27 27 H 1.08997 * 109.47260 * 59.99846 * 12 11 9 28 28 H 1.09007 * 109.46847 * 299.99601 * 12 11 9 29 29 H 1.08000 * 126.43502 * 0.02887 * 14 13 12 30 30 H 1.07994 * 125.61214 * 180.02562 * 15 14 13 31 31 H 0.96711 * 116.99696 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 2.2056 -3.6157 -0.0005 12 6 1.6030 -4.8236 0.5789 13 6 2.6099 -5.9447 0.5625 14 6 2.6822 -6.9919 -0.3686 15 6 3.7285 -7.7698 -0.0123 16 8 4.2960 -7.2531 1.0850 17 6 3.6287 -6.1390 1.4519 18 6 3.9384 -5.2907 2.6051 19 8 3.2611 -4.3071 2.8357 20 8 4.9746 -5.6003 3.4113 21 6 0.3710 -2.5799 -1.2495 22 9 -0.3289 -3.7912 -1.2493 23 9 -0.5381 -1.5166 -1.2490 24 9 1.1749 -2.5056 -2.3921 25 1 -0.4850 0.8401 0.0004 26 1 2.5520 -3.7952 -0.9312 27 1 0.7295 -5.1105 -0.0065 28 1 1.3012 -4.6218 1.6068 29 1 2.0252 -7.1471 -1.2116 30 1 4.0534 -8.6615 -0.5278 31 1 5.1398 -5.0108 4.1599 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608178668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:55 Heat of formation + Delta-G solvation = -225.027958 kcal Electronic energy + Delta-G solvation = -24355.035786 eV Core-core repulsion = 19995.454378 eV Total energy + Delta-G solvation = -4359.581408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.071 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.50552 -48.14955 -47.72992 -43.74405 -40.83384 -37.89355 -37.00877 -35.17540 -33.82576 -31.45704 -29.93182 -26.74407 -26.21142 -24.64910 -22.91085 -22.62377 -21.08032 -19.47526 -19.18061 -18.75201 -18.73615 -18.47058 -17.84339 -17.53509 -16.81377 -16.63345 -16.09317 -15.68706 -15.30953 -15.19337 -14.69602 -14.58492 -14.56137 -14.48139 -14.26138 -13.99664 -13.93956 -13.86749 -13.50159 -13.09966 -12.77854 -12.57380 -12.50829 -12.45268 -12.08112 -11.78257 -11.48689 -10.90732 -10.60048 -9.73914 -9.33861 -8.14873 -6.37781 -0.16693 1.32796 1.42640 1.43956 1.50621 1.57462 1.86075 2.38201 2.40069 2.41874 2.96448 3.30112 3.61384 3.73154 3.79445 3.89703 4.14837 4.23746 4.43417 4.48731 4.63273 4.80966 4.91782 5.02035 5.31321 5.52903 5.61417 5.77196 5.88939 6.19559 6.43893 6.70059 6.96488 7.30236 8.77613 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.005850 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.796140 B = 4785.113986 C = 5843.169177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.201 3.799 10 H 0.048 0.952 11 N -0.656 5.656 12 C 0.110 3.890 13 C -0.079 4.079 14 C -0.236 4.236 15 C 0.035 3.965 16 O -0.157 6.157 17 C -0.078 4.078 18 C 0.563 3.437 19 O -0.501 6.501 20 O -0.505 6.505 21 C 0.397 3.603 22 F -0.219 7.219 23 F -0.152 7.152 24 F -0.205 7.205 25 H 0.265 0.735 26 H 0.337 0.663 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.177 0.823 30 H 0.268 0.732 31 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -14.897 0.714 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.090 3.910 10 H 0.066 0.934 11 N -0.285 5.285 12 C -0.019 4.019 13 C -0.081 4.081 14 C -0.255 4.255 15 C -0.034 4.034 16 O -0.052 6.052 17 C -0.128 4.128 18 C 0.406 3.594 19 O -0.390 6.390 20 O -0.320 6.320 21 C 0.340 3.660 22 F -0.201 7.201 23 F -0.133 7.133 24 F -0.187 7.187 25 H 0.075 0.925 26 H 0.155 0.845 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.195 0.805 30 H 0.284 0.716 31 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 6.878 -14.672 1.222 16.250 hybrid contribution -0.817 1.147 -0.581 1.524 sum 6.061 -13.525 0.640 14.835 Atomic orbital electron populations 1.70491 1.06955 1.27509 1.46548 1.25915 0.95949 1.03199 0.94217 0.85272 0.78885 0.78364 0.77760 1.19087 1.20384 1.20110 1.21037 0.93889 0.88808 1.52789 0.91254 1.20151 0.89636 0.92389 0.88843 0.93417 1.60522 1.36675 1.04293 1.27039 1.20590 0.93411 0.87052 1.00822 1.20645 0.95618 0.97173 0.94679 1.22061 1.03574 0.96425 1.03420 1.25447 0.92565 0.99841 0.85583 1.84143 1.48823 1.33102 1.39138 1.20382 0.99344 0.92611 1.00506 1.18946 0.78230 0.81596 0.80590 1.91119 1.50478 1.26278 1.71136 1.84583 1.47639 1.57833 1.41896 1.24140 0.81020 0.72371 0.88467 1.92985 1.81775 1.48329 1.97037 1.93386 1.69044 1.54543 1.96326 1.92982 1.74232 1.96128 1.55362 0.92544 0.84464 0.92855 0.90908 0.80522 0.71638 0.70276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.15 9.50 21.45 0.20 -49.95 16 2 C 0.01 0.58 5.20 84.66 0.44 1.02 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.53 -29.30 8.58 25.60 0.22 -29.08 16 8 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 9 C 0.20 10.31 2.26 44.17 0.10 10.41 16 10 H 0.05 2.68 7.80 -2.38 -0.02 2.66 16 11 N -0.66 -28.75 6.22 -499.45 -3.11 -31.86 16 12 C 0.11 4.16 5.03 85.56 0.43 4.59 16 13 C -0.08 -2.44 5.71 -19.73 -0.11 -2.56 16 14 C -0.24 -5.20 10.83 22.06 0.24 -4.96 16 15 C 0.03 0.57 12.08 67.11 0.81 1.38 16 16 O -0.16 -3.79 10.67 -4.95 -0.05 -3.85 16 17 C -0.08 -2.38 7.18 24.04 0.17 -2.20 16 18 C 0.56 18.02 8.30 69.97 0.58 18.60 16 19 O -0.50 -19.92 15.78 19.43 0.31 -19.61 16 20 O -0.50 -11.90 13.44 -56.72 -0.76 -12.66 16 21 C 0.40 19.86 2.74 71.98 0.20 20.05 16 22 F -0.22 -9.85 15.04 44.97 0.68 -9.17 16 23 F -0.15 -8.44 12.91 44.97 0.58 -7.86 16 24 F -0.21 -9.99 16.31 44.97 0.73 -9.25 16 25 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 26 H 0.34 14.13 7.88 -89.68 -0.71 13.42 16 27 H 0.05 1.96 6.03 -2.39 -0.01 1.95 16 28 H 0.07 3.03 6.92 -2.38 -0.02 3.01 16 29 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.27 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.44 6.01 9.11 -74.05 -0.67 5.33 16 Total: -1.00 -70.59 288.62 3.53 -67.05 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -0.15 Total: 13.93 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 3.08 Total: 17.25 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -2.90 Total: -81.81 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.51 Total: -36.12 kcal Atomic # 9 Polarization: -28.27 SS G_CDS: 1.99 Total: -26.28 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -70.59 3.53 -67.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.975 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds