Wall clock time and date at job start Tue Mar 31 2020 07:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00047 * 2 1 4 4 H 1.48501 * 109.46940 * 269.99745 * 3 2 1 5 5 H 1.48505 * 109.47022 * 29.99385 * 3 2 1 6 6 H 1.48497 * 109.47364 * 149.99829 * 3 2 1 7 7 C 1.37884 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99895 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00002 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.21297 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.39362 * 119.99864 * 180.02562 * 13 11 10 15 15 S 1.75848 * 125.31900 * 0.13325 * 14 13 11 16 16 C 1.75749 * 91.26301 * 180.18711 * 15 14 13 17 17 C 1.32880 * 110.26017 * 359.82608 * 16 15 14 18 18 C 1.36317 * 125.31330 * 179.97438 * 14 13 11 19 19 C 1.48252 * 122.98210 * 0.02562 * 18 14 13 20 20 N 1.33752 * 126.31670 * 359.72617 * 19 18 14 21 21 N 1.28564 * 109.84394 * 179.75583 * 20 19 18 22 22 N 1.28918 * 109.74397 * 0.41765 * 21 20 19 23 23 H 0.97001 * 126.42744 * 179.86831 * 22 21 20 24 24 N 1.32065 * 126.32507 * 179.73113 * 19 18 14 25 25 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47332 * 59.99673 * 9 7 2 27 27 H 1.09004 * 109.46885 * 300.00454 * 9 7 2 28 28 H 1.08997 * 109.47625 * 59.99974 * 10 9 7 29 29 H 1.09004 * 109.47374 * 299.99900 * 10 9 7 30 30 H 0.97002 * 119.99710 * 359.97438 * 13 11 10 31 31 H 1.08001 * 124.86901 * 179.84554 * 16 15 14 32 32 H 1.08000 * 122.46355 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5286 -2.6364 0.0022 12 8 6.1351 -1.5859 0.0026 13 7 6.2025 -3.8036 0.0028 14 6 7.5961 -3.8036 0.0045 15 16 8.6127 -2.3687 0.0093 16 6 10.0688 -3.3528 0.0028 17 6 9.7520 -4.6433 0.0015 18 6 8.3841 -4.9159 0.0058 19 6 7.8359 -6.2933 0.0050 20 7 6.5417 -6.6308 0.0081 21 7 6.4244 -7.9111 0.0011 22 7 7.5931 -8.4554 0.0021 23 1 7.7857 -9.4061 -0.0004 24 7 8.5352 -7.4136 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8751 -0.6803 -0.8888 28 1 3.6586 -3.1502 -0.8892 29 1 3.6579 -3.1506 0.8907 30 1 5.7175 -4.6437 0.0029 31 1 11.0765 -2.9644 0.0007 32 1 10.4987 -5.4236 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609494682.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:02 Heat of formation + Delta-G solvation = 115.805312 kcal Electronic energy + Delta-G solvation = -19975.460625 eV Core-core repulsion = 16679.853970 eV Total energy + Delta-G solvation = -3295.606654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.42076 -40.07443 -38.05490 -34.63299 -33.67375 -33.62484 -32.97605 -31.44882 -28.93764 -26.42931 -24.78705 -24.66947 -22.40602 -21.71452 -20.38583 -19.59168 -19.04179 -17.94850 -17.20290 -16.77856 -16.22735 -15.58603 -15.55503 -14.89122 -14.41814 -14.13538 -13.72973 -13.63518 -13.45360 -12.70354 -12.61856 -12.50696 -12.24411 -11.52546 -11.27189 -11.17440 -11.08416 -11.03150 -11.00907 -10.83219 -10.24649 -10.11788 -9.84803 -9.52693 -9.24322 -8.54272 -8.47807 -7.99024 -6.05748 -4.05456 0.43416 0.89204 1.17864 1.74275 1.86011 2.03649 2.60365 3.02892 3.05763 3.35717 3.42785 3.51732 3.58056 4.00811 4.47709 4.89702 5.06335 5.08991 5.26442 5.29262 5.38523 5.74754 5.90295 5.94952 5.95949 6.17746 6.23383 6.30245 6.54359 7.25023 7.27460 7.33368 7.72035 7.86345 8.09361 8.48017 8.96800 9.56285 11.06915 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.003994 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.532753 B = 7008.521804 C = 8366.603754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.117 4.117 11 C 0.503 3.497 12 O -0.502 6.502 13 N -0.635 5.635 14 C 0.107 3.893 15 S 0.263 5.737 16 C -0.287 4.287 17 C -0.077 4.077 18 C -0.131 4.131 19 C 0.288 3.712 20 N -0.319 5.319 21 N 0.019 4.981 22 N -0.299 5.299 23 H 0.470 0.530 24 N -0.297 5.297 25 H 0.264 0.736 26 H 0.026 0.974 27 H 0.022 0.978 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.430 0.570 31 H 0.167 0.833 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.532 -14.798 0.036 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.565 4.565 8 H 0.092 0.908 9 C -0.037 4.037 10 C -0.157 4.157 11 C 0.293 3.707 12 O -0.377 6.377 13 N -0.281 5.281 14 C -0.115 4.115 15 S 0.522 5.478 16 C -0.422 4.422 17 C -0.107 4.107 18 C -0.151 4.151 19 C 0.006 3.994 20 N -0.197 5.197 21 N 0.023 4.977 22 N -0.146 5.146 23 H 0.324 0.676 24 N -0.141 5.141 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.273 0.727 31 H 0.185 0.815 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 20.022 -12.811 0.047 23.769 hybrid contribution 0.906 -1.640 -0.036 1.874 sum 20.927 -14.451 0.011 25.432 Atomic orbital electron populations 1.69902 1.06310 1.27045 1.50715 1.24961 0.94706 0.99212 0.94247 0.86807 0.80621 0.83423 0.78771 1.20191 1.21402 1.18494 1.21058 0.89003 0.94720 1.51731 0.90751 1.19417 0.96799 0.89538 0.97936 1.21739 0.85406 1.04132 1.04426 1.22278 0.92750 0.81886 0.73823 1.90594 1.69507 1.30751 1.46805 1.43838 1.02014 1.12429 1.69860 1.22855 0.88759 0.98768 1.01160 1.85534 0.90964 1.01129 1.70174 1.25833 1.04479 0.97836 1.14100 1.19434 0.93320 0.96790 1.01179 1.16053 0.92703 0.84800 1.21537 1.23042 0.87165 0.93538 0.95660 1.75133 1.18311 1.03586 1.22694 1.78306 1.08227 1.02516 1.08638 1.50979 1.01261 1.11915 1.50488 0.67595 1.78917 1.14078 0.94389 1.26694 0.92640 0.95541 0.95998 0.88562 0.88542 0.72686 0.81530 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.53 -14.69 9.66 -34.44 -0.33 -15.02 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 0.02 3.33 -27.89 -0.09 -0.07 16 10 C -0.12 -2.18 5.64 -27.88 -0.16 -2.33 16 11 C 0.50 8.79 7.79 -10.98 -0.09 8.71 16 12 O -0.50 -9.93 13.51 5.54 0.07 -9.85 16 13 N -0.63 -9.46 5.39 -10.36 -0.06 -9.51 16 14 C 0.11 1.53 7.18 -14.81 -0.11 1.42 16 15 S 0.26 3.45 20.44 -107.50 -2.20 1.25 16 16 C -0.29 -2.93 11.16 28.88 0.32 -2.61 16 17 C -0.08 -0.84 9.93 -40.97 -0.41 -1.25 16 18 C -0.13 -1.69 5.85 -106.01 -0.62 -2.31 16 19 C 0.29 3.66 8.01 -156.41 -1.25 2.41 16 20 N -0.32 -4.11 10.03 32.10 0.32 -3.79 16 21 N 0.02 0.21 13.42 60.35 0.81 1.02 16 22 N -0.30 -2.46 8.44 60.35 0.51 -1.95 16 23 H 0.47 1.58 8.96 -331.91 -2.98 -1.39 16 24 N -0.30 -3.25 12.81 32.12 0.41 -2.84 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 27 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 28 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.43 5.90 6.33 -40.82 -0.26 5.64 16 31 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 298.93 15.07 4.50 4.50 Total: -1.00 -33.51 298.93 -7.62 -41.13 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.27 Total: -1.42 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -2.83 Total: -9.11 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 2.77 Total: -43.83 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.85 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.20 Total: 1.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.51 -7.62 -41.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494682.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.938 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds