Wall clock time and date at job start Tue Mar 31 2020 07:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00047 * 2 1 4 4 H 1.48501 * 109.46940 * 269.99745 * 3 2 1 5 5 H 1.48505 * 109.47022 * 29.99385 * 3 2 1 6 6 H 1.48497 * 109.47364 * 149.99829 * 3 2 1 7 7 C 1.37884 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99895 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00002 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.21297 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.39362 * 119.99864 * 180.02562 * 13 11 10 15 15 S 1.75848 * 125.31900 * 0.13325 * 14 13 11 16 16 C 1.75749 * 91.26301 * 180.18711 * 15 14 13 17 17 C 1.32880 * 110.26017 * 359.82608 * 16 15 14 18 18 C 1.36317 * 125.31330 * 179.97438 * 14 13 11 19 19 C 1.48252 * 122.98210 * 0.02562 * 18 14 13 20 20 N 1.33752 * 126.31670 * 359.72617 * 19 18 14 21 21 N 1.28564 * 109.84394 * 179.75583 * 20 19 18 22 22 N 1.28918 * 109.74397 * 0.41765 * 21 20 19 23 23 H 0.97001 * 126.42744 * 179.86831 * 22 21 20 24 24 N 1.32065 * 126.32507 * 179.73113 * 19 18 14 25 25 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47332 * 59.99673 * 9 7 2 27 27 H 1.09004 * 109.46885 * 300.00454 * 9 7 2 28 28 H 1.08997 * 109.47625 * 59.99974 * 10 9 7 29 29 H 1.09004 * 109.47374 * 299.99900 * 10 9 7 30 30 H 0.97002 * 119.99710 * 359.97438 * 13 11 10 31 31 H 1.08001 * 124.86901 * 179.84554 * 16 15 14 32 32 H 1.08000 * 122.46355 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5286 -2.6364 0.0022 12 8 6.1351 -1.5859 0.0026 13 7 6.2025 -3.8036 0.0028 14 6 7.5961 -3.8036 0.0045 15 16 8.6127 -2.3687 0.0093 16 6 10.0688 -3.3528 0.0028 17 6 9.7520 -4.6433 0.0015 18 6 8.3841 -4.9159 0.0058 19 6 7.8359 -6.2933 0.0050 20 7 6.5417 -6.6308 0.0081 21 7 6.4244 -7.9111 0.0011 22 7 7.5931 -8.4554 0.0021 23 1 7.7857 -9.4061 -0.0004 24 7 8.5352 -7.4136 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8751 -0.6803 -0.8888 28 1 3.6586 -3.1502 -0.8892 29 1 3.6579 -3.1506 0.8907 30 1 5.7175 -4.6437 0.0029 31 1 11.0765 -2.9644 0.0007 32 1 10.4987 -5.4236 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609494682.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:01 Heat of formation + Delta-G solvation = 91.505210 kcal Electronic energy + Delta-G solvation = -19976.514356 eV Core-core repulsion = 16679.853970 eV Total energy + Delta-G solvation = -3296.660386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.28510 -41.34592 -39.06420 -35.82636 -35.55769 -34.53434 -33.84880 -33.38695 -30.06017 -28.07517 -25.81681 -25.63399 -23.59351 -23.05795 -21.76907 -20.64952 -19.98266 -19.31765 -18.75884 -17.67952 -17.64180 -16.90556 -16.65623 -16.19909 -15.87129 -15.48453 -15.00677 -14.87263 -14.65156 -14.35259 -14.10321 -13.44100 -13.40017 -13.12010 -12.91544 -12.27195 -12.17726 -12.06148 -11.99979 -11.95183 -11.88768 -11.85633 -11.74369 -11.38874 -10.87296 -10.75524 -9.44318 -8.99579 -8.28687 -6.32340 -0.51601 -0.00821 0.21183 0.87135 1.05863 1.25051 1.37160 1.37874 1.39277 1.53306 1.85338 2.05483 2.37748 2.70293 3.07281 3.13719 3.74650 3.99801 4.26157 4.28419 4.36665 4.42456 4.46674 4.84541 4.94006 5.01190 5.28528 5.32566 5.36243 5.43262 5.61814 5.67329 6.08102 6.26081 6.72504 6.83863 7.00156 7.32862 8.87001 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.003994 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.532753 B = 7008.521804 C = 8366.603754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.006 3.994 10 C -0.112 4.112 11 C 0.509 3.491 12 O -0.531 6.531 13 N -0.626 5.626 14 C 0.072 3.928 15 S 0.227 5.773 16 C -0.254 4.254 17 C -0.088 4.088 18 C -0.117 4.117 19 C 0.271 3.729 20 N -0.342 5.342 21 N 0.014 4.986 22 N -0.268 5.268 23 H 0.490 0.510 24 N -0.292 5.292 25 H 0.267 0.733 26 H 0.018 0.982 27 H 0.017 0.983 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.435 0.565 31 H 0.201 0.799 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.296 -15.873 0.006 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.032 4.032 10 C -0.152 4.152 11 C 0.299 3.701 12 O -0.408 6.408 13 N -0.273 5.273 14 C -0.149 4.149 15 S 0.487 5.513 16 C -0.390 4.390 17 C -0.117 4.117 18 C -0.137 4.137 19 C -0.012 4.012 20 N -0.220 5.220 21 N 0.018 4.982 22 N -0.120 5.120 23 H 0.349 0.651 24 N -0.137 5.137 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.278 0.722 31 H 0.218 0.782 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 22.808 -13.942 0.015 26.732 hybrid contribution 0.150 -1.564 -0.026 1.572 sum 22.958 -15.506 -0.010 27.704 Atomic orbital electron populations 1.70027 1.07935 1.28115 1.52449 1.25818 0.95476 1.02956 0.94198 0.85815 0.79426 0.79238 0.79182 1.19340 1.20697 1.17900 1.21398 0.91214 0.93740 1.50490 0.93274 1.19252 0.94028 0.92855 0.97112 1.21530 0.86815 1.01024 1.05816 1.21780 0.92074 0.82311 0.73944 1.90591 1.69912 1.31772 1.48492 1.43451 1.02662 1.11554 1.69611 1.22958 0.88212 0.99488 1.04213 1.85625 0.92808 1.02319 1.70536 1.26131 1.04533 0.96875 1.11469 1.19676 0.92789 0.97650 1.01560 1.16350 0.93470 0.84645 1.19280 1.23098 0.87360 0.93910 0.96803 1.75110 1.18800 1.04405 1.23714 1.78265 1.08851 1.02093 1.08971 1.51011 1.00261 1.12694 1.48076 0.65097 1.78860 1.14418 0.94355 1.26074 0.92412 0.96365 0.96508 0.87268 0.87293 0.72184 0.78178 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 2 C 0.01 0.77 5.47 84.66 0.46 1.23 16 3 Si 0.94 45.65 27.47 68.60 1.88 47.53 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.26 -12.08 6.54 99.48 0.65 -11.42 16 7 C -0.53 -30.07 9.66 25.60 0.25 -29.82 16 8 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 9 C 0.01 0.26 3.33 29.84 0.10 0.36 16 10 C -0.11 -4.16 5.64 29.85 0.17 -3.99 16 11 C 0.51 17.76 7.79 87.66 0.68 18.44 16 12 O -0.53 -21.03 13.51 -3.08 -0.04 -21.07 16 13 N -0.63 -18.42 5.39 -305.06 -1.65 -20.06 16 14 C 0.07 1.99 7.18 83.05 0.60 2.59 16 15 S 0.23 5.73 20.44 -56.49 -1.15 4.58 16 16 C -0.25 -4.44 11.16 66.64 0.74 -3.70 16 17 C -0.09 -1.65 9.93 21.39 0.21 -1.44 16 18 C -0.12 -2.82 5.85 -20.76 -0.12 -2.94 16 19 C 0.27 6.40 8.01 137.32 1.10 7.50 16 20 N -0.34 -8.40 10.03 -52.34 -0.53 -8.93 16 21 N 0.01 0.28 13.42 37.02 0.50 0.78 16 22 N -0.27 -3.72 8.44 37.02 0.31 -3.41 16 23 H 0.49 1.86 8.96 -340.34 -3.05 -1.19 16 24 N -0.29 -5.65 12.81 -52.31 -0.67 -6.32 16 25 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.02 0.89 7.16 -2.39 -0.02 0.87 16 27 H 0.02 0.81 7.53 -2.39 -0.02 0.79 16 28 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 29 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.43 11.75 6.33 -92.71 -0.59 11.17 16 31 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -72.56 298.93 0.66 -71.90 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.49 Total: 5.29 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.19 Total: -11.77 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -1.73 Total: -96.47 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.04 Total: -21.07 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.15 Total: 4.58 kcal Total: -72.56 0.66 -71.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494682.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.409 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds