Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46813 * 300.00056 * 3 2 1 6 6 H 1.48499 * 109.47139 * 60.00044 * 3 2 1 7 7 C 1.37884 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99516 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00171 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46874 * 299.99579 * 9 7 2 11 11 O 1.42896 * 109.47403 * 59.99227 * 9 7 2 12 12 C 1.52991 * 109.47329 * 179.97438 * 9 7 2 13 13 S 1.81402 * 109.47372 * 179.97438 * 12 9 7 14 14 C 1.76195 * 103.00259 * 179.97438 * 13 12 9 15 15 C 1.39007 * 119.65934 * 179.97438 * 14 13 12 16 16 C 1.39365 * 118.95651 * 180.02562 * 15 14 13 17 17 C 1.48467 * 120.85850 * 179.97438 * 16 15 14 18 18 N 1.34049 * 126.67052 * 359.70572 * 17 16 15 19 19 N 1.28982 * 107.26379 * 179.89901 * 18 17 16 20 20 N 1.28731 * 108.94968 * 0.37344 * 19 18 17 21 21 H 0.96995 * 125.34774 * 179.78838 * 20 19 18 22 22 N 1.28879 * 109.31467 * 359.75997 * 20 19 18 23 23 C 1.39963 * 118.28621 * 359.97438 * 16 15 14 24 24 C 1.37813 * 119.20842 * 0.02562 * 23 16 15 25 25 N 1.32004 * 120.97920 * 0.02562 * 24 23 16 26 26 H 0.97004 * 120.00192 * 0.02562 * 1 2 3 27 27 H 0.96707 * 113.99720 * 60.00263 * 11 9 7 28 28 H 1.09001 * 109.47167 * 59.99566 * 12 9 7 29 29 H 1.09005 * 109.46970 * 299.99730 * 12 9 7 30 30 H 1.07994 * 120.52460 * 0.04292 * 15 14 13 31 31 H 1.08002 * 120.39837 * 180.02562 * 23 16 15 32 32 H 1.08004 * 119.51304 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4298 -2.5751 -1.1664 12 6 2.2452 -3.6621 0.0005 13 16 1.3382 -5.2331 0.0013 14 6 2.6267 -6.4347 0.0004 15 6 2.3060 -7.7873 0.0013 16 6 3.3368 -8.7252 0.0012 17 6 3.0423 -10.1804 0.0026 18 7 1.8297 -10.7518 0.0097 19 7 2.0084 -12.0292 0.0062 20 7 3.2722 -12.2744 0.0053 21 1 3.6723 -13.1580 0.0057 22 7 3.9224 -11.1617 0.0030 23 6 4.6568 -8.2600 -0.0004 24 6 4.8912 -6.9019 -0.0012 25 7 3.8916 -6.0399 0.0000 26 1 -0.4850 0.8401 -0.0004 27 1 0.9222 -2.5300 -1.9975 28 1 2.8719 -3.6043 0.8905 29 1 2.8718 -3.6043 -0.8895 30 1 1.2742 -8.1063 0.0018 31 1 5.4819 -8.9569 -0.0010 32 1 5.9079 -6.5375 -0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609496197.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = 106.450286 kcal Electronic energy + Delta-G solvation = -19394.402718 eV Core-core repulsion = 16098.390400 eV Total energy + Delta-G solvation = -3296.012319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.80783 -39.98135 -35.89434 -34.96316 -34.22721 -32.17567 -31.71409 -31.34635 -29.65688 -25.55333 -25.41351 -24.99114 -23.39508 -22.34041 -20.96971 -19.67823 -17.83177 -17.48832 -17.16663 -16.40177 -15.96085 -15.03519 -14.65450 -14.52670 -14.46380 -14.17942 -13.89703 -13.88300 -13.55940 -12.71277 -12.48706 -11.92594 -11.88090 -11.62979 -11.46412 -11.41497 -11.20028 -10.93198 -10.82302 -10.20476 -9.85899 -9.77353 -9.59016 -9.54320 -9.14095 -8.62781 -8.29020 -7.15744 -6.06263 -4.25674 0.37661 0.86956 1.00173 1.80155 1.94379 2.11622 2.91234 3.25597 3.29080 3.34083 3.37817 3.68042 3.83486 4.36533 4.56875 4.80966 4.90179 5.00502 5.11139 5.15924 5.21153 5.62506 5.72176 5.92325 5.97719 6.01696 6.10658 6.25181 6.41627 6.73626 7.58070 7.76980 7.77722 7.79486 8.05268 8.76046 9.30676 9.50786 10.97887 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.043449 B = 0.002877 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.273715 B = 9728.959678 C =10283.997291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.567 4.567 8 H 0.060 0.940 9 C 0.242 3.758 10 H 0.066 0.934 11 O -0.558 6.558 12 C -0.108 4.108 13 S -0.057 6.057 14 C 0.125 3.875 15 C -0.117 4.117 16 C 0.039 3.961 17 C 0.221 3.779 18 N -0.258 5.258 19 N -0.047 5.047 20 N -0.227 5.227 21 H 0.476 0.524 22 N -0.287 5.287 23 C -0.159 4.159 24 C 0.119 3.881 25 N -0.477 5.477 26 H 0.262 0.738 27 H 0.348 0.652 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 -22.365 -0.233 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.127 4.127 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.607 4.607 8 H 0.078 0.922 9 C 0.182 3.818 10 H 0.083 0.917 11 O -0.361 6.361 12 C -0.257 4.257 13 S 0.188 5.812 14 C -0.123 4.123 15 C -0.146 4.146 16 C 0.027 3.973 17 C -0.059 4.059 18 N -0.132 5.132 19 N -0.042 5.042 20 N -0.073 5.073 21 H 0.331 0.669 22 N -0.139 5.139 23 C -0.186 4.186 24 C -0.041 4.041 25 N -0.191 5.191 26 H 0.072 0.928 27 H 0.192 0.808 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.415 -21.979 0.239 23.197 hybrid contribution 2.836 -0.093 -0.333 2.857 sum 10.251 -22.072 -0.094 24.337 Atomic orbital electron populations 1.70087 1.05956 1.26600 1.46525 1.25043 0.94756 0.99222 0.93671 0.86534 0.80184 0.83450 0.77747 1.19608 1.20801 1.20798 1.21541 0.93313 0.90506 1.55354 0.92151 1.19257 0.87568 0.88025 0.86914 0.91680 1.86596 1.38136 1.96072 1.15297 1.24812 1.02846 0.92456 1.05577 1.86071 1.07359 0.99158 1.88569 1.23602 0.95902 0.95765 0.97057 1.21682 1.00473 0.91267 1.01159 1.17314 0.94197 0.84890 1.00927 1.23515 0.85311 0.95156 1.01956 1.76161 1.22384 0.97604 1.17009 1.78959 0.99744 1.10927 1.14588 1.47756 1.03669 1.09934 1.45955 0.66937 1.74925 1.25278 0.92139 1.21533 1.21967 0.95696 0.97526 1.03379 1.22704 0.98546 0.88835 0.94017 1.68203 0.98835 1.38798 1.13292 0.92837 0.80822 0.89465 0.89974 0.83185 0.84038 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.94 12.84 55.43 0.71 -24.23 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.57 -15.23 8.76 -34.44 -0.30 -15.53 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.24 6.02 2.87 -27.89 -0.08 5.94 16 10 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 11 O -0.56 -14.11 12.33 -35.23 -0.43 -14.54 16 12 C -0.11 -2.23 4.83 37.15 0.18 -2.05 16 13 S -0.06 -1.05 21.55 -107.50 -2.32 -3.37 16 14 C 0.13 2.02 7.00 -16.98 -0.12 1.90 16 15 C -0.12 -1.65 9.52 -38.88 -0.37 -2.02 16 16 C 0.04 0.49 5.91 -104.62 -0.62 -0.13 16 17 C 0.22 2.59 7.97 -156.30 -1.25 1.34 16 18 N -0.26 -3.21 12.32 32.16 0.40 -2.81 16 19 N -0.05 -0.47 13.47 60.35 0.81 0.35 16 20 N -0.23 -1.54 7.90 60.35 0.48 -1.07 16 21 H 0.48 0.77 8.96 -340.37 -3.05 -2.28 16 22 N -0.29 -2.70 12.17 32.17 0.39 -2.31 16 23 C -0.16 -1.73 9.79 -39.09 -0.38 -2.11 16 24 C 0.12 1.43 11.16 -17.63 -0.20 1.23 16 25 N -0.48 -7.51 9.41 -12.19 -0.11 -7.63 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.35 7.81 9.04 45.56 0.41 8.22 16 28 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 29 H 0.08 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.15 2.03 7.97 -52.49 -0.42 1.61 16 31 H 0.14 1.17 7.97 -52.49 -0.42 0.76 16 32 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -32.82 308.53 -8.39 -41.21 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.71 Total: 3.24 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.23 Total: -9.31 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 2.67 Total: -37.69 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.43 Total: -14.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.32 Total: -3.37 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.82 -8.39 -41.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496197.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.660 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds