Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47076 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46813 * 300.00056 * 3 2 1 6 6 H 1.48499 * 109.47139 * 60.00044 * 3 2 1 7 7 C 1.37884 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99516 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00171 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46874 * 299.99579 * 9 7 2 11 11 O 1.42896 * 109.47403 * 59.99227 * 9 7 2 12 12 C 1.52991 * 109.47329 * 179.97438 * 9 7 2 13 13 S 1.81402 * 109.47372 * 179.97438 * 12 9 7 14 14 C 1.76195 * 103.00259 * 179.97438 * 13 12 9 15 15 C 1.39007 * 119.65934 * 179.97438 * 14 13 12 16 16 C 1.39365 * 118.95651 * 180.02562 * 15 14 13 17 17 C 1.48467 * 120.85850 * 179.97438 * 16 15 14 18 18 N 1.34049 * 126.67052 * 359.70572 * 17 16 15 19 19 N 1.28982 * 107.26379 * 179.89901 * 18 17 16 20 20 N 1.28731 * 108.94968 * 0.37344 * 19 18 17 21 21 H 0.96995 * 125.34774 * 179.78838 * 20 19 18 22 22 N 1.28879 * 109.31467 * 359.75997 * 20 19 18 23 23 C 1.39963 * 118.28621 * 359.97438 * 16 15 14 24 24 C 1.37813 * 119.20842 * 0.02562 * 23 16 15 25 25 N 1.32004 * 120.97920 * 0.02562 * 24 23 16 26 26 H 0.97004 * 120.00192 * 0.02562 * 1 2 3 27 27 H 0.96707 * 113.99720 * 60.00263 * 11 9 7 28 28 H 1.09001 * 109.47167 * 59.99566 * 12 9 7 29 29 H 1.09005 * 109.46970 * 299.99730 * 12 9 7 30 30 H 1.07994 * 120.52460 * 0.04292 * 15 14 13 31 31 H 1.08002 * 120.39837 * 180.02562 * 23 16 15 32 32 H 1.08004 * 119.51304 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4298 -2.5751 -1.1664 12 6 2.2452 -3.6621 0.0005 13 16 1.3382 -5.2331 0.0013 14 6 2.6267 -6.4347 0.0004 15 6 2.3060 -7.7873 0.0013 16 6 3.3368 -8.7252 0.0012 17 6 3.0423 -10.1804 0.0026 18 7 1.8297 -10.7518 0.0097 19 7 2.0084 -12.0292 0.0062 20 7 3.2722 -12.2744 0.0053 21 1 3.6723 -13.1580 0.0057 22 7 3.9224 -11.1617 0.0030 23 6 4.6568 -8.2600 -0.0004 24 6 4.8912 -6.9019 -0.0012 25 7 3.8916 -6.0399 0.0000 26 1 -0.4850 0.8401 -0.0004 27 1 0.9222 -2.5300 -1.9975 28 1 2.8719 -3.6043 0.8905 29 1 2.8718 -3.6043 -0.8895 30 1 1.2742 -8.1063 0.0018 31 1 5.4819 -8.9569 -0.0010 32 1 5.9079 -6.5375 -0.0028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609496197.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = 81.140399 kcal Electronic energy + Delta-G solvation = -19395.500237 eV Core-core repulsion = 16098.390400 eV Total energy + Delta-G solvation = -3297.109838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.57980 -41.02922 -37.87750 -35.81026 -35.07018 -34.27444 -32.65467 -32.37342 -31.51698 -27.39440 -26.41457 -25.90489 -24.47365 -23.27479 -22.82178 -20.44090 -19.26008 -18.83664 -18.24640 -17.46703 -17.00898 -16.68908 -16.41389 -16.15978 -15.83536 -15.39518 -15.24584 -15.13628 -14.76859 -14.15160 -13.47329 -13.39414 -13.23752 -13.04722 -12.79691 -12.67323 -12.58277 -12.39000 -12.25006 -12.00295 -11.53557 -11.03828 -10.85552 -10.73193 -10.67131 -10.51584 -10.27987 -8.54356 -8.14938 -6.41744 -0.53507 -0.04471 0.08540 0.52134 1.19792 1.32830 1.41175 1.42663 1.46148 1.56731 2.41006 2.44521 2.65773 3.00482 3.11546 3.58914 3.88200 3.93134 4.03232 4.15692 4.22756 4.29947 4.31682 4.37512 4.66281 4.75479 4.98125 5.03793 5.47225 5.54451 5.54794 5.67382 5.99514 6.67886 6.72563 7.00450 7.30498 7.48701 8.90004 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.043449 B = 0.002877 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.273715 B = 9728.959678 C =10283.997291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.027 3.973 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.580 4.580 8 H 0.064 0.936 9 C 0.243 3.757 10 H 0.030 0.970 11 O -0.572 6.572 12 C -0.087 4.087 13 S -0.084 6.084 14 C 0.110 3.890 15 C -0.120 4.120 16 C 0.039 3.961 17 C 0.206 3.794 18 N -0.290 5.290 19 N -0.052 5.052 20 N -0.193 5.193 21 H 0.497 0.503 22 N -0.274 5.274 23 C -0.133 4.133 24 C 0.118 3.882 25 N -0.504 5.504 26 H 0.263 0.737 27 H 0.359 0.641 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.177 0.823 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.392 -24.145 -0.439 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.619 4.619 8 H 0.083 0.917 9 C 0.184 3.816 10 H 0.048 0.952 11 O -0.376 6.376 12 C -0.236 4.236 13 S 0.160 5.840 14 C -0.138 4.138 15 C -0.149 4.149 16 C 0.026 3.974 17 C -0.075 4.075 18 N -0.162 5.162 19 N -0.047 5.047 20 N -0.045 5.045 21 H 0.357 0.643 22 N -0.128 5.128 23 C -0.159 4.159 24 C -0.043 4.043 25 N -0.218 5.218 26 H 0.072 0.928 27 H 0.204 0.796 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.165 0.835 31 H 0.194 0.806 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.257 -23.797 0.030 25.914 hybrid contribution 2.098 0.150 -0.269 2.121 sum 12.355 -23.647 -0.239 26.681 Atomic orbital electron populations 1.70223 1.07713 1.27577 1.47971 1.25928 0.95531 1.03005 0.93180 0.85420 0.79122 0.78753 0.77736 1.18576 1.20395 1.20454 1.21907 0.93648 0.91655 1.54737 0.91749 1.19008 0.87451 0.89525 0.85608 0.95211 1.86537 1.38874 1.96233 1.15947 1.24250 1.01406 0.92652 1.05319 1.85964 1.08984 0.98845 1.90241 1.23175 0.95597 0.95246 0.99762 1.21615 1.01094 0.90759 1.01466 1.17432 0.94441 0.85243 1.00283 1.23377 0.85586 0.95144 1.03358 1.76156 1.23297 0.98565 1.18216 1.78916 1.00736 1.10094 1.14963 1.47838 1.02887 1.10529 1.43258 0.64257 1.74873 1.24784 0.92230 1.20874 1.22346 0.95852 0.97644 1.00032 1.23325 0.99076 0.89052 0.92824 1.68116 0.99183 1.40479 1.14046 0.92779 0.79626 0.89868 0.89849 0.83483 0.80584 0.78452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.57 12.84 21.45 0.28 -53.29 16 2 C 0.03 1.48 5.40 84.66 0.46 1.93 16 3 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.58 -31.67 8.76 25.60 0.22 -31.44 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.24 12.58 2.87 29.84 0.09 12.67 16 10 H 0.03 1.74 8.14 -2.38 -0.02 1.72 16 11 O -0.57 -29.94 12.33 -148.98 -1.84 -31.78 16 12 C -0.09 -3.71 4.83 71.98 0.35 -3.37 16 13 S -0.08 -3.22 21.55 -56.49 -1.22 -4.44 16 14 C 0.11 3.54 7.00 84.78 0.59 4.14 16 15 C -0.12 -3.36 9.52 22.73 0.22 -3.14 16 16 C 0.04 0.89 5.91 -19.86 -0.12 0.77 16 17 C 0.21 4.38 7.97 137.38 1.09 5.47 16 18 N -0.29 -6.83 12.32 -52.17 -0.64 -7.47 16 19 N -0.05 -0.93 13.47 37.02 0.50 -0.43 16 20 N -0.19 -2.04 7.90 37.02 0.29 -1.75 16 21 H 0.50 -0.13 8.96 -347.54 -3.12 -3.24 16 22 N -0.27 -4.26 12.17 -52.12 -0.63 -4.90 16 23 C -0.13 -2.42 9.79 22.59 0.22 -2.20 16 24 C 0.12 2.47 11.16 84.57 0.94 3.42 16 25 N -0.50 -15.31 9.41 -192.48 -1.81 -17.13 16 26 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.36 16.60 9.04 -74.05 -0.67 15.93 16 28 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.15 4.08 7.97 -2.91 -0.02 4.06 16 31 H 0.18 2.01 7.97 -2.91 -0.02 1.98 16 32 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -72.33 308.53 -1.57 -73.90 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -2.58 Total: 14.01 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.07 Total: -11.76 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.02 Total: -84.97 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.84 Total: -31.78 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -1.22 Total: -4.44 kcal Total: -72.33 -1.57 -73.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496197.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.039 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds