Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99792 * 2 1 4 4 H 1.48498 * 109.47625 * 240.00498 * 3 2 1 5 5 H 1.48499 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46924 * 120.00013 * 3 2 1 7 7 C 1.39932 * 120.00719 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00468 * 197.88954 * 7 2 1 9 9 C 1.41416 * 119.99418 * 17.88920 * 7 2 1 10 10 C 1.40776 * 120.20907 * 24.44513 * 9 7 2 11 11 C 1.37642 * 119.89669 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32187 * 359.74629 * 11 10 9 13 13 C 1.39291 * 120.42428 * 0.51148 * 12 11 10 14 14 N 1.39687 * 119.95672 * 179.76565 * 13 12 11 15 15 C 1.46501 * 119.99607 * 359.72634 * 14 13 12 16 16 C 1.50701 * 109.47317 * 180.02562 * 15 14 13 17 17 C 1.33397 * 122.54067 * 259.97833 * 16 15 14 18 18 S 1.75885 * 109.60745 * 180.28270 * 17 16 15 19 19 C 1.75887 * 90.97761 * 359.65358 * 18 17 16 20 20 C 1.33439 * 109.59909 * 0.34390 * 19 18 17 21 21 Cl 1.73596 * 122.54871 * 179.75689 * 20 19 18 22 22 C 1.38320 * 120.09346 * 359.49086 * 13 12 11 23 23 H 0.96997 * 120.00506 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.05408 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.84639 * 180.02562 * 11 10 9 26 26 H 1.08001 * 119.78855 * 180.27852 * 12 11 10 27 27 H 0.96998 * 120.00445 * 179.72767 * 14 13 12 28 28 H 1.08998 * 109.47250 * 59.99529 * 15 14 13 29 29 H 1.09004 * 109.46762 * 300.00086 * 15 14 13 30 30 H 1.08007 * 125.20017 * 0.02562 * 17 16 15 31 31 H 1.08004 * 125.20059 * 180.02562 * 19 18 17 32 32 H 1.08001 * 120.16076 * 180.23410 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6967 -1.2125 5 1 1.2771 2.7464 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0489 -1.2345 0.2867 9 6 1.3523 -2.4067 -0.3773 10 6 0.2218 -2.3605 -1.2149 11 6 -0.4119 -3.5274 -1.5772 12 6 0.0605 -4.7489 -1.1258 13 6 1.1748 -4.8099 -0.2922 14 7 1.6398 -6.0466 0.1612 15 6 0.9521 -7.2779 -0.2352 16 6 1.6471 -8.4631 0.3838 17 6 2.5041 -9.2274 -0.2950 18 16 3.1044 -10.5105 0.7475 19 6 2.1370 -9.9136 2.0898 20 6 1.4443 -8.8416 1.7003 21 17 0.3709 -7.9864 2.7634 22 6 1.8249 -3.6480 0.0827 23 1 -0.4851 0.8400 0.0004 24 1 -0.1478 -1.4108 -1.5727 25 1 -1.2788 -3.4910 -2.2201 26 1 -0.4406 -5.6596 -1.4190 27 1 2.4181 -6.0901 0.7386 28 1 0.9712 -7.3712 -1.3210 29 1 -0.0819 -7.2432 0.1083 30 1 2.7834 -9.0831 -1.3283 31 1 2.1044 -10.3511 3.0767 32 1 2.6912 -3.6943 0.7260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001620939398.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = 46.355712 kcal Electronic energy + Delta-G solvation = -17615.911478 eV Core-core repulsion = 14693.416926 eV Total energy + Delta-G solvation = -2922.494553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 293.034 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.97810 -37.55636 -36.21394 -34.68909 -32.96877 -30.34249 -29.68892 -28.01513 -25.45583 -25.12075 -23.08445 -20.75893 -20.13914 -19.11279 -17.93430 -17.29456 -16.08671 -15.42899 -14.88846 -14.67276 -14.31412 -14.08142 -13.62697 -13.32726 -12.95647 -12.69247 -12.57187 -12.34617 -12.03108 -11.54523 -11.47346 -11.15049 -11.04441 -10.99591 -10.87839 -10.54164 -10.39498 -9.77863 -9.28249 -9.16478 -9.03423 -8.69235 -8.56671 -7.33899 -6.66954 -6.16477 -4.26681 0.62557 1.11254 1.50657 2.19810 2.50045 2.90903 3.11655 3.14770 3.27333 3.41981 4.00229 4.44550 4.55308 4.76338 4.85954 5.16791 5.37387 5.59984 5.73306 5.88478 6.01189 6.21216 6.36698 6.59022 7.08118 7.08816 7.16082 7.38871 7.44164 7.82193 7.96032 8.18731 8.29368 8.55227 8.66763 8.83340 9.04506 9.16642 10.29160 Molecular weight = 293.03amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.003274 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.651479 B = 8549.104893 C = 8571.105716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.142 3.858 10 C -0.199 4.199 11 C -0.075 4.075 12 C -0.302 4.302 13 C 0.228 3.772 14 N -0.754 5.754 15 C 0.196 3.804 16 C -0.109 4.109 17 C -0.185 4.185 18 S 0.132 5.868 19 C -0.217 4.217 20 C -0.033 4.033 21 Cl -0.037 7.037 22 C -0.288 4.288 23 H 0.279 0.721 24 H 0.114 0.886 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.388 0.612 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.175 0.825 31 H 0.174 0.826 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -17.473 1.784 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.139 3.861 10 C -0.219 4.219 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.130 3.870 14 N -0.388 5.388 15 C 0.068 3.932 16 C -0.122 4.122 17 C -0.322 4.322 18 S 0.395 5.605 19 C -0.354 4.354 20 C -0.073 4.073 21 Cl -0.008 7.008 22 C -0.312 4.312 23 H 0.090 0.910 24 H 0.132 0.868 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.221 0.779 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.192 0.808 31 H 0.191 0.809 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.949 -18.570 1.619 19.054 hybrid contribution -0.463 1.897 0.639 2.054 sum 3.486 -16.673 2.257 17.182 Atomic orbital electron populations 1.69852 1.07531 1.29034 1.35334 1.25878 0.94660 1.01108 0.92286 0.86427 0.80183 0.80511 0.79886 1.18887 1.20434 1.19124 1.19517 0.98048 0.91335 1.40661 0.90718 1.17319 0.90312 0.91240 0.87221 1.21166 1.00549 0.96647 1.03580 1.20428 0.97634 0.92902 0.98437 1.19845 1.03315 0.96473 1.12873 1.17428 0.92986 0.83713 0.92923 1.44312 1.34423 1.02163 1.57934 1.19658 0.95158 0.80661 0.97689 1.18898 1.00545 1.00125 0.92620 1.25546 1.02644 0.99501 1.04489 1.84296 1.44820 1.29951 1.01477 1.25515 1.04009 1.01503 1.04325 1.19797 0.98817 0.96266 0.92395 1.98405 1.62596 1.76094 1.63718 1.20381 1.06660 0.91505 1.12667 0.91018 0.86824 0.89703 0.89736 0.77865 0.92085 0.91755 0.80754 0.80905 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.05 10.96 55.55 0.61 -20.45 16 2 C 0.08 2.02 5.14 -17.35 -0.09 1.93 16 3 Si 0.91 19.10 29.60 -169.99 -5.03 14.07 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.47 -12.73 9.05 -37.74 -0.34 -13.07 16 8 H 0.07 1.96 7.91 -52.49 -0.42 1.55 16 9 C 0.14 3.91 5.57 -106.85 -0.60 3.31 16 10 C -0.20 -5.35 8.69 -38.84 -0.34 -5.69 16 11 C -0.07 -1.82 10.02 -39.69 -0.40 -2.22 16 12 C -0.30 -6.92 9.32 -39.08 -0.36 -7.28 16 13 C 0.23 5.16 6.64 -83.86 -0.56 4.60 16 14 N -0.75 -13.69 5.72 -59.86 -0.34 -14.03 16 15 C 0.20 2.95 4.73 -5.19 -0.02 2.93 16 16 C -0.11 -1.37 5.17 -106.23 -0.55 -1.92 16 17 C -0.19 -1.92 10.95 29.04 0.32 -1.61 16 18 S 0.13 1.14 23.34 -107.50 -2.51 -1.37 16 19 C -0.22 -2.16 11.08 29.05 0.32 -1.84 16 20 C -0.03 -0.41 6.26 -41.17 -0.26 -0.66 16 21 Cl -0.04 -0.50 28.23 -51.86 -1.46 -1.96 16 22 C -0.29 -7.28 9.63 -38.68 -0.37 -7.65 16 23 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 24 H 0.11 3.15 6.15 -52.48 -0.32 2.83 16 25 H 0.08 1.85 8.06 -52.49 -0.42 1.43 16 26 H 0.08 1.74 6.70 -52.49 -0.35 1.38 16 27 H 0.39 6.73 8.47 -40.82 -0.35 6.39 16 28 H 0.06 0.89 7.86 -51.93 -0.41 0.49 16 29 H 0.06 1.03 7.56 -51.93 -0.39 0.64 16 30 H 0.18 1.53 8.06 -52.48 -0.42 1.10 16 31 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 306.60 15.07 4.62 4.62 Total: -1.00 -28.56 306.60 -10.43 -38.99 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.06 Total: 9.29 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -3.25 Total: -29.16 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.27 Total: -34.47 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.51 Total: -1.37 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.46 Total: -1.96 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.56 -10.43 -38.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620939398.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.341 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds