Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99792 * 2 1 4 4 H 1.48498 * 109.47625 * 240.00498 * 3 2 1 5 5 H 1.48499 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46924 * 120.00013 * 3 2 1 7 7 C 1.39932 * 120.00719 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00468 * 197.88954 * 7 2 1 9 9 C 1.41416 * 119.99418 * 17.88920 * 7 2 1 10 10 C 1.40776 * 120.20907 * 24.44513 * 9 7 2 11 11 C 1.37642 * 119.89669 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32187 * 359.74629 * 11 10 9 13 13 C 1.39291 * 120.42428 * 0.51148 * 12 11 10 14 14 N 1.39687 * 119.95672 * 179.76565 * 13 12 11 15 15 C 1.46501 * 119.99607 * 359.72634 * 14 13 12 16 16 C 1.50701 * 109.47317 * 180.02562 * 15 14 13 17 17 C 1.33397 * 122.54067 * 259.97833 * 16 15 14 18 18 S 1.75885 * 109.60745 * 180.28270 * 17 16 15 19 19 C 1.75887 * 90.97761 * 359.65358 * 18 17 16 20 20 C 1.33439 * 109.59909 * 0.34390 * 19 18 17 21 21 Cl 1.73596 * 122.54871 * 179.75689 * 20 19 18 22 22 C 1.38320 * 120.09346 * 359.49086 * 13 12 11 23 23 H 0.96997 * 120.00506 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.05408 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.84639 * 180.02562 * 11 10 9 26 26 H 1.08001 * 119.78855 * 180.27852 * 12 11 10 27 27 H 0.96998 * 120.00445 * 179.72767 * 14 13 12 28 28 H 1.08998 * 109.47250 * 59.99529 * 15 14 13 29 29 H 1.09004 * 109.46762 * 300.00086 * 15 14 13 30 30 H 1.08007 * 125.20017 * 0.02562 * 17 16 15 31 31 H 1.08004 * 125.20059 * 180.02562 * 19 18 17 32 32 H 1.08001 * 120.16076 * 180.23410 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6967 -1.2125 5 1 1.2771 2.7464 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0489 -1.2345 0.2867 9 6 1.3523 -2.4067 -0.3773 10 6 0.2218 -2.3605 -1.2149 11 6 -0.4119 -3.5274 -1.5772 12 6 0.0605 -4.7489 -1.1258 13 6 1.1748 -4.8099 -0.2922 14 7 1.6398 -6.0466 0.1612 15 6 0.9521 -7.2779 -0.2352 16 6 1.6471 -8.4631 0.3838 17 6 2.5041 -9.2274 -0.2950 18 16 3.1044 -10.5105 0.7475 19 6 2.1370 -9.9136 2.0898 20 6 1.4443 -8.8416 1.7003 21 17 0.3709 -7.9864 2.7634 22 6 1.8249 -3.6480 0.0827 23 1 -0.4851 0.8400 0.0004 24 1 -0.1478 -1.4108 -1.5727 25 1 -1.2788 -3.4910 -2.2201 26 1 -0.4406 -5.6596 -1.4190 27 1 2.4181 -6.0901 0.7386 28 1 0.9712 -7.3712 -1.3210 29 1 -0.0819 -7.2432 0.1083 30 1 2.7834 -9.0831 -1.3283 31 1 2.1044 -10.3511 3.0767 32 1 2.6912 -3.6943 0.7260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001620939398.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = 31.533805 kcal Electronic energy + Delta-G solvation = -17616.554204 eV Core-core repulsion = 14693.416926 eV Total energy + Delta-G solvation = -2923.137279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 293.034 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09256 -39.19498 -37.22937 -36.31770 -34.73918 -31.70578 -31.41708 -29.44142 -27.13194 -26.72575 -24.11270 -22.60344 -21.96064 -20.03426 -19.16408 -18.80537 -17.36243 -17.17288 -16.38439 -16.24066 -15.93583 -15.18125 -14.87115 -14.58117 -14.32655 -14.18947 -13.93378 -13.75049 -13.46925 -13.25752 -12.82215 -12.74205 -12.46421 -12.40733 -12.11844 -11.96329 -11.81384 -11.66699 -11.19152 -11.03684 -10.45572 -9.87812 -9.35463 -9.31532 -8.59154 -7.91900 -6.30737 -0.18273 0.32459 0.70102 1.07631 1.26903 1.36882 1.40011 1.51107 1.62232 1.63628 2.23800 2.82484 2.98731 3.70920 3.88205 3.91539 4.33891 4.49554 4.51841 4.63341 4.69631 4.75980 5.01050 5.15884 5.18331 5.23026 5.26029 5.43631 5.60743 5.95462 6.04461 6.22353 6.33136 6.64115 6.91235 7.02886 7.04895 7.25843 8.39021 Molecular weight = 293.03amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.003274 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.651479 B = 8549.104893 C = 8571.105716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.071 0.929 9 C 0.114 3.886 10 C -0.232 4.232 11 C -0.075 4.075 12 C -0.303 4.303 13 C 0.239 3.761 14 N -0.743 5.743 15 C 0.197 3.803 16 C -0.131 4.131 17 C -0.185 4.185 18 S 0.199 5.801 19 C -0.216 4.216 20 C -0.056 4.056 21 Cl -0.060 7.060 22 C -0.312 4.312 23 H 0.287 0.713 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.393 0.607 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.191 0.809 31 H 0.192 0.808 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.417 -19.335 1.570 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.111 3.889 10 C -0.253 4.253 11 C -0.094 4.094 12 C -0.326 4.326 13 C 0.138 3.862 14 N -0.375 5.375 15 C 0.070 3.930 16 C -0.143 4.143 17 C -0.322 4.322 18 S 0.463 5.537 19 C -0.353 4.353 20 C -0.095 4.095 21 Cl -0.031 7.031 22 C -0.336 4.336 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.226 0.774 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.209 0.791 31 H 0.210 0.790 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.984 -20.492 1.413 21.137 hybrid contribution -0.746 2.192 0.701 2.419 sum 4.238 -18.301 2.114 18.903 Atomic orbital electron populations 1.69914 1.09033 1.30399 1.35644 1.26752 0.95458 1.04438 0.91175 0.85280 0.78812 0.75717 0.80005 1.18462 1.19104 1.18460 1.19786 0.98259 0.92731 1.42705 0.91035 1.17677 0.91030 0.92347 0.87841 1.21098 1.01804 0.96913 1.05471 1.20723 0.97883 0.92645 0.98107 1.20148 1.03201 0.97008 1.12241 1.17472 0.92227 0.84766 0.91778 1.44380 1.34298 1.01861 1.56992 1.19697 0.94705 0.80243 0.98314 1.18650 1.02333 1.00217 0.93145 1.25844 1.01365 0.99482 1.05506 1.84167 1.42606 1.27625 0.99298 1.25870 1.03043 1.00531 1.05843 1.19867 0.99940 0.97445 0.92247 1.98393 1.63554 1.76787 1.64395 1.20488 1.07394 0.92074 1.13630 0.90288 0.88620 0.87404 0.86956 0.77378 0.91192 0.92762 0.79137 0.79049 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.09 10.96 21.82 0.24 -44.86 16 2 C 0.04 1.93 5.14 85.25 0.44 2.37 16 3 Si 0.98 39.71 29.60 68.60 2.03 41.74 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 7 C -0.51 -28.70 9.05 23.46 0.21 -28.49 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 9 C 0.11 6.51 5.57 -21.31 -0.12 6.39 16 10 C -0.23 -12.92 8.69 22.75 0.20 -12.72 16 11 C -0.07 -3.64 10.02 22.20 0.22 -3.42 16 12 C -0.30 -13.64 9.32 22.59 0.21 -13.43 16 13 C 0.24 10.79 6.64 38.16 0.25 11.05 16 14 N -0.74 -26.33 5.72 -343.29 -1.96 -28.30 16 15 C 0.20 5.64 4.73 85.63 0.41 6.04 16 16 C -0.13 -3.03 5.17 -20.90 -0.11 -3.14 16 17 C -0.19 -3.27 10.95 66.72 0.73 -2.54 16 18 S 0.20 2.72 23.34 -56.49 -1.32 1.40 16 19 C -0.22 -3.72 11.08 66.73 0.74 -2.98 16 20 C -0.06 -1.27 6.26 21.24 0.13 -1.14 16 21 Cl -0.06 -1.58 28.23 -2.72 -0.08 -1.66 16 22 C -0.31 -16.16 9.63 22.86 0.22 -15.94 16 23 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 24 H 0.10 5.56 6.15 -2.91 -0.02 5.54 16 25 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 26 H 0.11 4.38 6.70 -2.91 -0.02 4.36 16 27 H 0.39 13.34 8.47 -92.71 -0.79 12.55 16 28 H 0.07 1.89 7.86 -2.39 -0.02 1.87 16 29 H 0.05 1.68 7.56 -2.38 -0.02 1.66 16 30 H 0.19 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -63.57 306.60 2.82 -60.75 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.38 Total: 28.86 kcal Atomic # 6 Polarization: -61.48 SS G_CDS: 3.54 Total: -57.95 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -1.73 Total: -73.15 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.32 Total: 1.40 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -63.57 2.82 -60.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620939398.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.287 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds