Wall clock time and date at job start Tue Mar 31 2020 07:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 S 1.81409 * 109.46814 * 179.97438 * 11 10 9 13 13 O 1.42096 * 110.54119 * 291.62426 * 12 11 10 14 14 O 1.42097 * 110.54031 * 68.37593 * 12 11 10 15 15 N 1.65601 * 104.44942 * 180.02562 * 12 11 10 16 16 C 1.46495 * 119.99861 * 64.99646 * 15 12 11 17 17 C 1.53011 * 109.46753 * 164.99989 * 16 15 12 18 18 H 1.08992 * 108.85185 * 305.70470 * 17 16 15 19 19 C 1.52941 * 108.88569 * 187.12660 * 17 16 15 20 20 C 1.55000 * 109.04355 * 208.99423 * 19 17 16 21 21 S 1.83991 * 100.81670 * 41.60971 * 20 19 17 22 22 C 1.53700 * 108.88486 * 64.28240 * 17 16 15 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 29 29 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 30 30 H 0.97004 * 120.00069 * 245.00516 * 15 12 11 31 31 H 1.08993 * 109.47680 * 284.99877 * 16 15 12 32 32 H 1.09003 * 109.47111 * 45.00691 * 16 15 12 33 33 H 1.08999 * 109.60555 * 329.03661 * 19 17 16 34 34 H 1.09003 * 109.60429 * 89.17671 * 19 17 16 35 35 H 1.08993 * 111.23416 * 283.70694 * 20 19 17 36 36 H 1.08997 * 111.14789 * 159.47721 * 20 19 17 37 37 H 1.09001 * 110.34119 * 242.48507 * 22 17 16 38 38 H 1.09000 * 110.34353 * 4.74521 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 16 2.6593 -6.3659 -0.0007 13 8 3.3551 -6.4262 -1.2381 14 8 3.3569 -6.4261 1.2358 15 7 1.7090 -7.7221 -0.0006 16 6 0.8491 -8.0139 -1.1501 17 6 0.3757 -9.4671 -1.0769 18 1 1.2462 -10.1171 -0.9894 19 6 -0.3707 -9.8102 -2.3670 20 6 -1.4320 -10.8982 -2.0632 21 16 -2.0978 -10.2927 -0.4584 22 6 -0.5033 -9.6417 0.1718 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 0.8541 -5.0446 0.8903 29 1 0.8535 -5.0451 -0.8897 30 1 1.7216 -8.3231 0.7607 31 1 -0.0147 -7.3493 -1.1358 32 1 1.4103 -7.8607 -2.0719 33 1 -0.8616 -8.9172 -2.7541 34 1 0.3341 -10.1871 -3.1081 35 1 -0.9708 -11.8795 -1.9520 36 1 -2.2076 -10.9157 -2.8288 37 1 -0.0480 -10.3549 0.8590 38 1 -0.6546 -8.6819 0.6659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447928362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:28 Heat of formation + Delta-G solvation = -99.629134 kcal Electronic energy + Delta-G solvation = -19255.072792 eV Core-core repulsion = 16156.815743 eV Total energy + Delta-G solvation = -3098.257049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.17505 -36.91732 -35.80744 -34.69550 -34.15856 -32.20501 -29.98736 -27.83484 -27.03771 -23.75566 -23.75101 -20.87270 -20.50991 -19.25387 -17.66089 -17.12760 -16.74859 -16.48492 -15.85556 -15.73425 -15.09292 -14.82845 -14.49524 -14.22611 -13.91926 -13.48185 -12.87192 -12.65796 -12.59989 -12.31521 -12.27716 -11.99624 -11.94097 -11.81436 -11.78694 -11.46515 -11.24752 -11.15498 -10.93483 -10.87238 -10.46292 -10.25271 -9.97519 -9.79413 -9.35423 -9.11214 -8.42024 -8.04712 -6.06944 -4.10162 0.40631 1.48287 1.95399 2.77617 3.29622 3.35862 3.39822 3.86566 4.02313 4.08538 4.35594 4.41169 4.42490 4.56753 4.70917 4.83579 5.02739 5.09692 5.11544 5.14880 5.22705 5.27094 5.29462 5.33748 5.50563 5.63882 5.75184 5.86309 6.23801 6.41913 6.77754 6.85055 7.55183 7.64901 7.90928 8.31211 8.96086 9.54692 11.04259 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.003143 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.772868 B = 8905.293445 C = 9645.108360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.601 3.399 13 O -0.962 6.962 14 O -0.963 6.963 15 N -1.127 6.127 16 C 0.120 3.880 17 C -0.101 4.101 18 H 0.090 0.910 19 C -0.123 4.123 20 C -0.068 4.068 21 S -0.298 6.298 22 C -0.071 4.071 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.414 0.586 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.349 -22.867 -3.385 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.697 3.303 13 O -0.952 6.952 14 O -0.953 6.953 15 N -0.885 5.885 16 C -0.007 4.007 17 C -0.122 4.122 18 H 0.108 0.892 19 C -0.163 4.163 20 C -0.216 4.216 21 S -0.072 6.072 22 C -0.219 4.219 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.248 0.752 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.662 -22.681 -3.060 23.041 hybrid contribution 0.732 0.879 -0.082 1.147 sum -1.930 -21.803 -3.142 22.112 Atomic orbital electron populations 1.69957 1.06085 1.26804 1.50554 1.25021 0.94891 0.99380 0.95085 0.86551 0.79876 0.83166 0.78194 1.20560 1.21166 1.19746 1.21251 0.93252 0.90895 1.51113 0.92372 1.19063 0.93518 0.90450 0.97744 1.21506 0.99398 0.91661 1.01990 1.30537 1.16335 1.15851 1.11270 1.05292 0.75587 0.75200 0.74197 1.93565 1.70287 1.85714 1.45647 1.93582 1.70656 1.85867 1.45200 1.55770 1.62393 1.42745 1.27610 1.21463 0.94403 0.95690 0.89148 1.21858 0.99430 0.97580 0.93349 0.89153 1.22399 0.97476 0.99186 0.97210 1.24312 1.00546 1.00962 0.95758 1.88029 1.18061 1.77679 1.23429 1.24135 0.93280 1.04821 0.99667 0.92879 0.96112 0.96112 0.91547 0.91557 0.85240 0.85502 0.75216 0.90860 0.89516 0.89511 0.89452 0.89111 0.87397 0.88937 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.11 -2.11 5.16 -26.73 -0.14 -2.24 16 11 C -0.61 -8.89 6.07 37.16 0.23 -8.67 16 12 S 2.60 35.62 5.46 -107.50 -0.59 35.03 16 13 O -0.96 -16.02 17.49 -57.54 -1.01 -17.02 16 14 O -0.96 -16.21 18.08 -57.54 -1.04 -17.25 16 15 N -1.13 -10.51 5.66 -10.61 -0.06 -10.57 16 16 C 0.12 0.95 5.03 -4.04 -0.02 0.93 16 17 C -0.10 -0.65 2.79 -90.28 -0.25 -0.90 16 18 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 19 C -0.12 -0.68 5.78 -25.70 -0.15 -0.83 16 20 C -0.07 -0.40 7.52 38.21 0.29 -0.11 16 21 S -0.30 -2.65 23.22 -107.50 -2.50 -5.14 16 22 C -0.07 -0.50 6.31 37.52 0.24 -0.26 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.41 3.13 8.09 -34.47 -0.28 2.85 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.09 0.49 7.83 -51.93 -0.41 0.09 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.77 7.53 -51.93 -0.39 0.38 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -35.28 337.14 -10.84 -46.12 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.09 Total: -2.01 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -0.36 Total: -24.98 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.68 Total: -36.31 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -2.05 Total: -34.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 32.97 SS G_CDS: -3.08 Total: 29.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.28 -10.84 -46.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447928362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.510 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds