Wall clock time and date at job start Tue Mar 31 2020 07:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 S 1.81409 * 109.46814 * 179.97438 * 11 10 9 13 13 O 1.42096 * 110.54119 * 291.62426 * 12 11 10 14 14 O 1.42097 * 110.54031 * 68.37593 * 12 11 10 15 15 N 1.65601 * 104.44942 * 180.02562 * 12 11 10 16 16 C 1.46495 * 119.99861 * 64.99646 * 15 12 11 17 17 C 1.53011 * 109.46753 * 164.99989 * 16 15 12 18 18 H 1.08992 * 108.85185 * 305.70470 * 17 16 15 19 19 C 1.52941 * 108.88569 * 187.12660 * 17 16 15 20 20 C 1.55000 * 109.04355 * 208.99423 * 19 17 16 21 21 S 1.83991 * 100.81670 * 41.60971 * 20 19 17 22 22 C 1.53700 * 108.88486 * 64.28240 * 17 16 15 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 29 29 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 30 30 H 0.97004 * 120.00069 * 245.00516 * 15 12 11 31 31 H 1.08993 * 109.47680 * 284.99877 * 16 15 12 32 32 H 1.09003 * 109.47111 * 45.00691 * 16 15 12 33 33 H 1.08999 * 109.60555 * 329.03661 * 19 17 16 34 34 H 1.09003 * 109.60429 * 89.17671 * 19 17 16 35 35 H 1.08993 * 111.23416 * 283.70694 * 20 19 17 36 36 H 1.08997 * 111.14789 * 159.47721 * 20 19 17 37 37 H 1.09001 * 110.34119 * 242.48507 * 22 17 16 38 38 H 1.09000 * 110.34353 * 4.74521 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 16 2.6593 -6.3659 -0.0007 13 8 3.3551 -6.4262 -1.2381 14 8 3.3569 -6.4261 1.2358 15 7 1.7090 -7.7221 -0.0006 16 6 0.8491 -8.0139 -1.1501 17 6 0.3757 -9.4671 -1.0769 18 1 1.2462 -10.1171 -0.9894 19 6 -0.3707 -9.8102 -2.3670 20 6 -1.4320 -10.8982 -2.0632 21 16 -2.0978 -10.2927 -0.4584 22 6 -0.5033 -9.6417 0.1718 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 0.8541 -5.0446 0.8903 29 1 0.8535 -5.0451 -0.8897 30 1 1.7216 -8.3231 0.7607 31 1 -0.0147 -7.3493 -1.1358 32 1 1.4103 -7.8607 -2.0719 33 1 -0.8616 -8.9172 -2.7541 34 1 0.3341 -10.1871 -3.1081 35 1 -0.9708 -11.8795 -1.9520 36 1 -2.2076 -10.9157 -2.8288 37 1 -0.0480 -10.3549 0.8590 38 1 -0.6546 -8.6819 0.6659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447928362.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:27 Heat of formation + Delta-G solvation = -124.624669 kcal Electronic energy + Delta-G solvation = -19256.156680 eV Core-core repulsion = 16156.815743 eV Total energy + Delta-G solvation = -3099.340937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.78037 -38.12912 -37.04873 -36.46079 -34.84610 -34.16044 -30.53162 -29.64976 -27.64078 -25.62156 -24.30542 -22.44220 -21.20017 -20.31101 -18.74217 -18.52050 -17.79145 -17.45301 -17.12114 -16.65588 -16.49474 -16.06105 -15.62828 -15.26577 -14.50465 -14.50038 -14.21590 -13.96417 -13.58940 -13.51988 -13.28600 -13.20276 -13.12645 -12.96900 -12.82106 -12.75535 -12.62179 -12.42821 -12.19136 -12.07689 -11.74540 -11.62663 -11.38196 -11.13384 -10.81169 -10.57635 -10.38165 -8.71600 -8.22933 -6.33956 -0.73134 0.93965 1.40206 1.40825 1.42752 1.52202 1.80057 2.39651 2.76103 3.10683 3.22921 3.49959 3.61498 3.73138 3.90875 3.96636 4.08475 4.25037 4.34040 4.40619 4.48970 4.63378 4.65046 4.68651 4.71268 4.84903 4.95175 4.99439 5.07585 5.12431 5.26670 5.45506 5.63132 5.79518 6.08522 6.19579 6.81986 7.35510 8.88511 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.003143 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.772868 B = 8905.293445 C = 9645.108360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.611 4.611 12 S 2.635 3.365 13 O -0.989 6.989 14 O -0.993 6.993 15 N -1.110 6.110 16 C 0.110 3.890 17 C -0.094 4.094 18 H 0.102 0.898 19 C -0.122 4.122 20 C -0.051 4.051 21 S -0.369 6.369 22 C -0.061 4.061 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.001 0.999 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.426 0.574 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 -23.792 -3.978 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.591 4.591 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.742 4.742 12 S 2.730 3.270 13 O -0.978 6.978 14 O -0.983 6.983 15 N -0.872 5.872 16 C -0.016 4.016 17 C -0.116 4.116 18 H 0.120 0.880 19 C -0.162 4.162 20 C -0.199 4.199 21 S -0.143 6.143 22 C -0.209 4.209 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.020 0.980 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.262 0.738 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.938 -23.607 -3.647 23.965 hybrid contribution 0.456 1.086 0.079 1.181 sum -1.482 -22.520 -3.568 22.849 Atomic orbital electron populations 1.70071 1.07631 1.27889 1.51392 1.25936 0.95810 1.03240 0.94595 0.85481 0.78693 0.78525 0.78587 1.19655 1.20610 1.18912 1.21751 0.93747 0.92555 1.51012 0.92158 1.18964 0.94038 0.91884 0.95890 1.21311 0.98662 0.92570 1.02087 1.30518 1.16755 1.13797 1.13114 1.04053 0.74994 0.75186 0.72760 1.93531 1.71262 1.86251 1.46800 1.93538 1.71841 1.86454 1.46511 1.55326 1.62081 1.41099 1.28685 1.21717 0.94398 0.97110 0.88382 1.21849 0.99699 0.96551 0.93481 0.87967 1.22418 0.97628 0.99110 0.97056 1.24393 1.00575 1.01490 0.93409 1.88281 1.20917 1.78487 1.26658 1.24180 0.91840 1.04781 1.00136 0.92645 0.97800 0.98012 0.91411 0.91668 0.83727 0.83615 0.73772 0.89954 0.89335 0.89722 0.87568 0.87868 0.86562 0.87871 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.11 -4.25 5.16 30.60 0.16 -4.09 16 11 C -0.61 -17.23 6.07 71.98 0.44 -16.79 16 12 S 2.64 68.28 5.46 -56.49 -0.31 67.97 16 13 O -0.99 -31.47 17.49 -127.65 -2.23 -33.70 16 14 O -0.99 -32.28 18.08 -127.65 -2.31 -34.59 16 15 N -1.11 -18.18 5.66 -187.49 -1.06 -19.25 16 16 C 0.11 1.47 5.03 86.38 0.43 1.91 16 17 C -0.09 -0.96 2.79 -10.57 -0.03 -0.99 16 18 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 19 C -0.12 -1.03 5.78 31.26 0.18 -0.85 16 20 C -0.05 -0.49 7.52 72.67 0.55 0.06 16 21 S -0.37 -6.24 23.22 -56.49 -1.31 -7.55 16 22 C -0.06 -0.76 6.31 72.22 0.46 -0.30 16 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.14 3.62 8.14 -2.39 -0.02 3.60 16 29 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.43 5.36 8.09 -96.74 -0.78 4.58 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.22 7.68 -2.39 -0.02 1.20 16 33 H 0.08 0.77 7.83 -2.39 -0.02 0.75 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.34 7.53 -2.39 -0.02 1.32 16 Total: -1.00 -75.97 337.14 -1.63 -77.60 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.26 Total: 8.62 kcal Atomic # 6 Polarization: -52.84 SS G_CDS: 3.03 Total: -49.81 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -0.78 Total: -74.62 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -4.54 Total: -68.29 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 62.04 SS G_CDS: -1.62 Total: 60.42 kcal Total: -75.97 -1.63 -77.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447928362.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.022 kcal (2) G-P(sol) polarization free energy of solvation -75.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds