Wall clock time and date at job start Tue Mar 31 2020 07:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39859 * 119.98606 * 121.50379 * 3 2 1 5 5 C 1.36561 * 120.00994 * 180.25197 * 4 3 2 6 6 C 1.39948 * 119.98812 * 359.52150 * 5 4 3 7 7 C 1.47179 * 120.01047 * 180.23006 * 6 5 4 8 8 C 1.34411 * 120.00029 * 0.22909 * 7 6 5 9 9 C 1.47331 * 119.99908 * 179.97438 * 8 7 6 10 10 C 1.40236 * 120.00967 * 359.72390 * 9 8 7 11 11 C 1.38109 * 120.37724 * 179.69234 * 10 9 8 12 12 C 1.38142 * 120.39081 * 0.60988 * 11 10 9 13 13 F 1.35105 * 119.99307 * 179.69447 * 12 11 10 14 14 C 1.41097 * 120.00983 * 359.67215 * 12 11 10 15 15 C 1.41333 * 120.18876 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99822 * 330.09481 * 15 14 12 17 17 C 1.39897 * 119.99964 * 150.09143 * 15 14 12 18 18 N 1.30866 * 119.99772 * 161.76041 * 17 15 14 19 19 Si 1.86792 * 120.00278 * 341.76538 * 17 15 14 20 20 H 1.48501 * 109.47245 * 95.40420 * 19 17 15 21 21 H 1.48498 * 109.47172 * 215.40273 * 19 17 15 22 22 H 1.48501 * 109.47022 * 335.40307 * 19 17 15 23 23 C 1.39130 * 120.00562 * 180.02562 * 9 8 7 24 24 C 1.39941 * 119.97967 * 0.46244 * 6 5 4 25 25 C 1.36562 * 119.98785 * 359.76556 * 24 6 5 26 26 H 1.07996 * 119.99726 * 359.97438 * 4 3 2 27 27 H 1.08000 * 120.01108 * 179.75077 * 5 4 3 28 28 H 1.08001 * 119.99701 * 180.22610 * 7 6 5 29 29 H 1.07999 * 119.99771 * 359.97438 * 8 7 6 30 30 H 1.08000 * 119.80641 * 359.97438 * 10 9 8 31 31 H 1.07995 * 119.79662 * 180.28061 * 11 10 9 32 32 H 0.96999 * 120.00104 * 180.02562 * 18 17 15 33 33 H 1.07996 * 120.19309 * 0.02562 * 23 9 8 34 34 H 1.07994 * 120.00480 * 179.75105 * 24 6 5 35 35 H 1.07998 * 119.99441 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2667 0.6340 -1.0328 5 6 4.6323 0.6304 -1.0360 6 6 5.3327 0.0016 -0.0003 7 6 6.8044 0.0019 -0.0007 8 6 7.4762 0.6101 -0.9933 9 6 8.9495 0.6109 -0.9933 10 6 9.6512 -0.0179 0.0453 11 6 11.0322 -0.0273 0.0496 12 6 11.7385 0.5934 -0.9625 13 9 13.0894 0.5847 -0.9470 14 6 11.0491 1.2361 -2.0125 15 6 11.7679 1.8719 -3.0502 16 1 12.7404 2.2974 -2.8513 17 6 11.2196 1.9500 -4.3348 18 7 11.6864 2.8201 -5.1937 19 14 9.8211 0.8125 -4.8242 20 1 8.5242 1.5071 -4.6224 21 1 9.9648 0.4381 -6.2541 22 1 9.8625 -0.4122 -3.9853 23 6 9.6449 1.2409 -2.0205 24 6 4.6331 -0.6317 1.0331 25 6 3.2675 -0.6316 1.0329 26 1 2.7263 1.1220 -1.8303 27 1 5.1719 1.1160 -1.8357 28 1 7.3447 -0.4866 0.7968 29 1 6.9359 1.0983 -1.7909 30 1 9.1084 -0.5016 0.8440 31 1 11.5631 -0.5182 0.8518 32 1 11.3060 2.8745 -6.0843 33 1 9.1080 1.7308 -2.8193 34 1 5.1731 -1.1205 1.8304 35 1 2.7275 -1.1207 1.8302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239296708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:13 Heat of formation + Delta-G solvation = 33.310811 kcal Electronic energy + Delta-G solvation = -20613.238891 eV Core-core repulsion = 17262.231437 eV Total energy + Delta-G solvation = -3351.007454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.53116 -39.75229 -38.03033 -36.71366 -34.62820 -33.59363 -31.53695 -31.12634 -30.63975 -28.05207 -25.38471 -24.33978 -22.95115 -21.93580 -21.27417 -19.34021 -18.98921 -17.36488 -16.83226 -16.21928 -15.60159 -15.27467 -14.85577 -14.65573 -14.31458 -14.25532 -14.25117 -13.76601 -13.53619 -13.31635 -12.98939 -12.85530 -12.79022 -12.51247 -12.16948 -11.84712 -11.73807 -11.72048 -11.28982 -11.03806 -10.95156 -10.67059 -10.13496 -10.10262 -9.86824 -9.36158 -9.33795 -8.61196 -7.98890 -7.18570 -7.13775 -4.68688 0.22098 1.17859 1.62189 2.33812 2.45179 2.62776 2.91856 3.02889 3.15042 3.22433 3.69403 3.78918 3.80010 4.30561 4.54098 4.61238 4.68425 5.06666 5.08210 5.18648 5.22916 5.46077 5.50295 5.63613 5.75641 5.77692 5.95485 6.04667 6.08753 6.14357 6.27532 6.41264 6.58904 6.67548 6.78841 6.92622 7.10232 7.20342 7.26877 7.35715 7.49974 7.77595 8.14079 8.34659 8.53061 9.87226 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.003421 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.076997 B = 8182.103358 C = 9377.547352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.261 3.739 3 C -0.054 4.054 4 C -0.060 4.060 5 C -0.130 4.130 6 C 0.005 3.995 7 C -0.165 4.165 8 C -0.047 4.047 9 C -0.049 4.049 10 C -0.200 4.200 11 C -0.116 4.116 12 C 0.000 4.000 13 F -0.155 7.155 14 C 0.061 3.939 15 C -0.436 4.436 16 H 0.097 0.903 17 C 0.084 3.916 18 N -0.796 5.796 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.241 1.241 23 C -0.194 4.194 24 C -0.122 4.122 25 C -0.063 4.063 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.289 0.711 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 -5.225 7.143 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.054 4.054 3 C -0.058 4.058 4 C -0.080 4.080 5 C -0.148 4.148 6 C 0.004 3.996 7 C -0.183 4.183 8 C -0.065 4.065 9 C -0.050 4.050 10 C -0.219 4.219 11 C -0.136 4.136 12 C -0.020 4.020 13 F -0.133 7.133 14 C 0.057 3.943 15 C -0.464 4.464 16 H 0.115 0.885 17 C -0.137 4.137 18 N -0.419 5.419 19 Si 0.733 3.267 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.164 1.164 23 C -0.213 4.213 24 C -0.140 4.140 25 C -0.083 4.083 26 H 0.149 0.851 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.906 -5.065 6.873 15.475 hybrid contribution 0.185 -0.291 -0.418 0.541 sum -12.721 -5.356 6.456 15.238 Atomic orbital electron populations 1.81246 1.12178 1.09090 1.08127 1.25805 0.92737 0.93390 0.93488 1.16064 0.84086 1.06313 0.99321 1.20823 0.94278 0.96434 0.96511 1.21128 0.93604 1.00741 0.99297 1.19401 0.93773 0.93380 0.93048 1.21944 0.90694 1.04515 1.01142 1.22430 0.93477 0.94252 0.96308 1.18578 0.91005 0.99452 0.95933 1.20379 0.92702 1.08341 1.00449 1.20544 0.94526 1.00951 0.97536 1.17932 0.76224 1.06973 1.00843 1.91325 1.29927 1.95383 1.96710 1.17628 0.91825 0.91741 0.93068 1.19423 1.05164 1.29305 0.92481 0.88550 1.26174 0.97007 0.94235 0.96253 1.69691 1.38062 1.27321 1.06794 0.86359 0.80099 0.82577 0.77709 1.19223 1.21268 1.16430 1.21075 0.93350 1.06803 1.00062 1.20978 0.93431 1.00604 0.99004 1.20807 0.94338 0.96674 0.96516 0.85145 0.84620 0.85330 0.86611 0.87275 0.87220 0.90050 0.87025 0.84750 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.59 18.54 41.84 0.78 -4.82 16 2 C 0.26 2.81 15.32 -22.47 -0.34 2.47 16 3 C -0.05 -0.50 5.74 -106.76 -0.61 -1.12 16 4 C -0.06 -0.54 9.69 -39.58 -0.38 -0.92 16 5 C -0.13 -1.29 9.35 -39.55 -0.37 -1.66 16 6 C 0.00 0.05 5.87 -104.99 -0.62 -0.57 16 7 C -0.17 -2.02 9.29 -37.30 -0.35 -2.37 16 8 C -0.05 -0.69 9.29 -37.24 -0.35 -1.04 16 9 C -0.05 -0.92 5.86 -105.12 -0.62 -1.54 16 10 C -0.20 -3.56 9.41 -38.88 -0.37 -3.93 16 11 C -0.12 -2.27 9.98 -39.66 -0.40 -2.66 16 12 C 0.00 0.01 7.31 -38.53 -0.28 -0.27 16 13 F -0.15 -3.61 16.76 2.25 0.04 -3.58 16 14 C 0.06 1.47 5.10 -106.81 -0.55 0.92 16 15 C -0.44 -11.34 9.25 -37.78 -0.35 -11.69 16 16 H 0.10 2.70 7.97 -52.49 -0.42 2.28 16 17 C 0.08 2.07 5.40 -17.34 -0.09 1.98 16 18 N -0.80 -20.12 13.93 55.54 0.77 -19.35 16 19 Si 0.91 19.06 24.52 -169.99 -4.17 14.90 16 20 H -0.27 -5.21 6.71 56.52 0.38 -4.83 16 21 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.24 -5.19 6.87 56.52 0.39 -4.80 16 23 C -0.19 -4.18 6.90 -38.43 -0.27 -4.44 16 24 C -0.12 -1.06 9.73 -39.55 -0.38 -1.45 16 25 C -0.06 -0.52 9.69 -39.58 -0.38 -0.90 16 26 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.14 1.26 6.14 -52.49 -0.32 0.94 16 28 H 0.13 1.46 6.05 -52.49 -0.32 1.15 16 29 H 0.12 1.54 6.05 -52.49 -0.32 1.22 16 30 H 0.11 1.60 6.14 -52.49 -0.32 1.27 16 31 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 32 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 33 H 0.11 2.36 4.74 -52.49 -0.25 2.11 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -27.02 315.26 -7.34 -34.36 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -2.81 Total: 2.91 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -6.70 Total: -29.18 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 1.55 Total: -24.17 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.58 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.17 Total: 14.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.02 -7.34 -34.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239296708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.675 kcal (2) G-P(sol) polarization free energy of solvation -27.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds