Wall clock time and date at job start Tue Mar 31 2020 07:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48506 * 109.46769 * 239.99979 * 3 2 1 5 5 H 1.48500 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47134 * 120.00077 * 3 2 1 7 7 C 1.40083 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00307 * 197.33331 * 7 2 1 9 9 C 1.40748 * 120.00276 * 17.34108 * 7 2 1 10 10 C 1.40854 * 120.59704 * 24.61156 * 9 7 2 11 11 C 1.37509 * 119.80867 * 179.70490 * 10 9 7 12 12 F 1.35103 * 119.43006 * 180.29487 * 11 10 9 13 13 C 1.39094 * 121.14126 * 0.55673 * 11 10 9 14 14 C 1.37789 * 121.27008 * 359.43976 * 13 11 10 15 15 C 1.39497 * 120.07850 * 0.26884 * 14 13 11 16 16 C 1.47433 * 120.54884 * 180.02562 * 15 14 13 17 17 C 1.39088 * 120.72200 * 64.71960 * 16 15 14 18 18 C 1.38730 * 120.45139 * 179.71704 * 17 16 15 19 19 C 1.36177 * 121.91971 * 0.57956 * 18 17 16 20 20 C 1.40579 * 120.76314 * 359.70955 * 19 18 17 21 21 N 1.33702 * 121.10887 * 180.02562 * 20 19 18 22 22 C 1.31144 * 121.29746 * 180.02562 * 21 20 19 23 23 C 1.39234 * 121.75936 * 359.94686 * 22 21 20 24 24 C 1.36833 * 119.86020 * 0.03149 * 23 22 21 25 25 C 1.40205 * 118.10160 * 359.97438 * 24 23 22 26 26 H 0.97000 * 119.99994 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.09977 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.36840 * 179.70975 * 13 11 10 29 29 H 1.08003 * 119.96198 * 180.29932 * 14 13 11 30 30 H 1.07999 * 119.77010 * 0.02562 * 17 16 15 31 31 H 1.07994 * 119.04209 * 180.28847 * 18 17 16 32 32 H 1.07995 * 119.61586 * 179.68944 * 19 18 17 33 33 H 1.07999 * 119.11768 * 179.97438 * 22 21 20 34 34 H 1.08008 * 120.06851 * 179.97438 * 23 22 21 35 35 H 1.08002 * 120.95293 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0953 1.6963 -1.2126 5 1 1.2766 2.7465 -0.0006 6 1 3.0954 1.6964 1.2125 7 6 2.0080 -1.2132 0.0005 8 1 3.0512 -1.2343 0.2792 9 6 1.3523 -2.4046 -0.3622 10 6 0.2157 -2.3729 -1.1936 11 6 -0.4088 -3.5472 -1.5428 12 9 -1.4948 -3.5083 -2.3455 13 6 0.0552 -4.7739 -1.0796 14 6 1.1627 -4.8582 -0.2643 15 6 1.8396 -3.6997 0.1175 16 6 3.0261 -3.7778 0.9891 17 6 4.1874 -4.4075 0.5537 18 6 5.3026 -4.4726 1.3763 19 6 5.3043 -3.9416 2.6303 20 6 4.1642 -3.2955 3.1391 21 7 4.1584 -2.7713 4.3691 22 6 3.0967 -2.1682 4.8477 23 6 1.9271 -2.0426 4.1029 24 6 1.8673 -2.5572 2.8364 25 6 3.0056 -3.2008 2.3306 26 1 -0.4850 0.8400 0.0004 27 1 -0.1618 -1.4294 -1.5592 28 1 -0.4600 -5.6782 -1.3681 29 1 1.5075 -5.8223 0.0792 30 1 4.2228 -4.8442 -0.4334 31 1 6.1938 -4.9629 1.0134 32 1 6.1918 -4.0179 3.2410 33 1 3.1308 -1.7577 5.8460 34 1 1.0684 -1.5409 4.5242 35 1 0.9689 -2.4702 2.2432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240939708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:13 Heat of formation + Delta-G solvation = 17.180637 kcal Electronic energy + Delta-G solvation = -22410.681227 eV Core-core repulsion = 19058.974317 eV Total energy + Delta-G solvation = -3351.706911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.77488 -40.09261 -37.51488 -36.14331 -33.99383 -32.94346 -30.40830 -30.10850 -29.80831 -27.70947 -25.61586 -23.73112 -22.90832 -22.07346 -21.29610 -19.69772 -17.76652 -17.55543 -16.50896 -16.25471 -16.03845 -15.04792 -14.73536 -14.61490 -14.42437 -14.15650 -13.73066 -13.54208 -13.14546 -12.87473 -12.70115 -12.46603 -12.24803 -11.84431 -11.70015 -11.33441 -11.19464 -11.06886 -10.87835 -10.71347 -10.47020 -10.23914 -9.98538 -9.64225 -9.44356 -8.98428 -8.27024 -7.80555 -7.73630 -7.26735 -6.99906 -4.71491 0.94261 1.37660 2.28302 2.57018 2.72140 2.90750 2.93647 3.02909 3.46578 3.69553 4.25980 4.65369 4.73004 5.13854 5.24496 5.29810 5.42045 5.54346 5.54906 5.56702 5.74530 5.88052 5.96917 6.06343 6.24045 6.43085 6.50036 6.56715 6.69724 6.70807 6.75560 6.89891 6.91816 7.03647 7.19755 7.28159 7.35213 7.50482 7.61409 7.70633 7.91791 8.26674 8.37724 8.47256 8.56888 9.78520 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.011885 B = 0.007661 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.305603 B = 3654.001757 C = 4919.201685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.430 4.430 8 H 0.085 0.915 9 C 0.152 3.848 10 C -0.210 4.210 11 C 0.120 3.880 12 F -0.167 7.167 13 C -0.288 4.288 14 C -0.035 4.035 15 C -0.214 4.214 16 C 0.066 3.934 17 C -0.152 4.152 18 C -0.085 4.085 19 C -0.131 4.131 20 C 0.131 3.869 21 N -0.493 5.493 22 C 0.125 3.875 23 C -0.204 4.204 24 C -0.006 4.006 25 C -0.096 4.096 26 H 0.289 0.711 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.129 0.871 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -2.192 3.852 5.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.103 0.897 9 C 0.149 3.851 10 C -0.230 4.230 11 C 0.101 3.899 12 F -0.146 7.146 13 C -0.308 4.308 14 C -0.053 4.053 15 C -0.216 4.216 16 C 0.065 3.935 17 C -0.170 4.170 18 C -0.105 4.105 19 C -0.150 4.150 20 C 0.010 3.990 21 N -0.202 5.202 22 C -0.046 4.046 23 C -0.224 4.224 24 C -0.032 4.032 25 C -0.097 4.097 26 H 0.100 0.900 27 H 0.149 0.851 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.585 -2.141 4.284 6.630 hybrid contribution -0.727 0.945 -0.643 1.355 sum 3.858 -1.196 3.641 5.438 Atomic orbital electron populations 1.69756 1.07727 1.30406 1.31278 1.26025 0.94776 1.01774 0.91826 0.86338 0.80396 0.79627 0.80635 1.18318 1.19861 1.18500 1.19529 0.98232 0.90601 1.37395 0.89695 1.18238 0.89248 0.90381 0.87255 1.21183 1.01254 0.96006 1.04580 1.17731 0.84682 0.95145 0.92376 1.91345 1.53577 1.97618 1.72095 1.20029 1.04073 0.95047 1.11681 1.20321 0.93873 0.95833 0.95258 1.19438 1.00770 0.93550 1.07850 1.19802 0.92870 0.90776 0.90066 1.21302 0.92540 1.03079 1.00069 1.20594 0.98036 0.98211 0.93615 1.20475 0.97112 1.01102 0.96278 1.18768 0.93326 0.96935 0.90007 1.68005 1.28504 1.10690 1.12978 1.22745 0.88601 0.94079 0.99199 1.21820 0.99912 1.04335 0.96304 1.21601 0.98223 0.89660 0.93734 1.19903 0.94490 1.00603 0.94745 0.89963 0.85065 0.88169 0.88133 0.85939 0.86330 0.85956 0.83381 0.85312 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.74 10.95 55.55 0.61 -17.13 16 2 C 0.08 1.76 5.16 -17.32 -0.09 1.67 16 3 Si 0.91 17.44 29.59 -169.99 -5.03 12.40 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 7 C -0.43 -10.15 7.11 -37.94 -0.27 -10.42 16 8 H 0.08 2.04 7.26 -52.49 -0.38 1.66 16 9 C 0.15 3.61 4.92 -104.65 -0.51 3.10 16 10 C -0.21 -5.11 8.66 -38.86 -0.34 -5.45 16 11 C 0.12 2.78 7.25 -39.53 -0.29 2.50 16 12 F -0.17 -3.79 17.24 2.25 0.04 -3.75 16 13 C -0.29 -6.17 9.95 -39.43 -0.39 -6.56 16 14 C -0.03 -0.71 9.74 -39.28 -0.38 -1.10 16 15 C -0.21 -4.66 4.76 -102.38 -0.49 -5.15 16 16 C 0.07 1.32 4.62 -102.71 -0.47 0.85 16 17 C -0.15 -2.66 9.75 -39.08 -0.38 -3.04 16 18 C -0.08 -1.31 9.87 -40.14 -0.40 -1.71 16 19 C -0.13 -2.19 9.93 -39.44 -0.39 -2.58 16 20 C 0.13 2.50 6.60 -84.89 -0.56 1.94 16 21 N -0.49 -9.02 10.35 -11.01 -0.11 -9.13 16 22 C 0.13 2.01 11.14 -17.47 -0.19 1.81 16 23 C -0.20 -3.41 10.04 -39.72 -0.40 -3.81 16 24 C -0.01 -0.13 8.47 -39.35 -0.33 -0.46 16 25 C -0.10 -1.92 5.47 -104.75 -0.57 -2.49 16 26 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 27 H 0.13 3.32 6.18 -52.49 -0.32 2.99 16 28 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 35 H 0.15 3.14 6.57 -52.49 -0.34 2.80 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -25.55 307.63 -9.47 -35.02 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -3.14 Total: 8.85 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -6.46 Total: -30.89 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.49 Total: -26.26 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -25.55 -9.47 -35.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240939708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.204 kcal (2) G-P(sol) polarization free energy of solvation -25.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds