Wall clock time and date at job start Tue Mar 31 2020 07:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31531 * 1 3 3 Si 1.86804 * 120.00074 * 2 1 4 4 H 1.48492 * 109.47167 * 270.00453 * 3 2 1 5 5 H 1.48503 * 109.46573 * 30.00535 * 3 2 1 6 6 H 1.48494 * 109.47111 * 150.00271 * 3 2 1 7 7 C 1.38685 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00110 * 179.97438 * 7 2 1 9 9 O 1.34797 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.35651 * 117.00199 * 185.05528 * 9 7 2 11 11 C 1.39058 * 119.93867 * 354.45800 * 10 9 7 12 12 C 1.37761 * 120.06459 * 180.02562 * 11 10 9 13 13 C 1.39569 * 119.93408 * 359.97314 * 12 11 10 14 14 C 1.48101 * 120.05751 * 179.97438 * 13 12 11 15 15 C 1.40811 * 119.74299 * 179.97438 * 14 13 12 16 16 N 1.31134 * 120.45599 * 179.97438 * 15 14 13 17 17 C 1.33775 * 119.83515 * 0.02562 * 16 15 14 18 18 C 1.40785 * 121.03676 * 179.97438 * 17 16 15 19 19 C 1.36599 * 118.24465 * 180.02562 * 18 17 16 20 20 C 1.39332 * 119.91499 * 359.97438 * 19 18 17 21 21 N 1.31117 * 121.69172 * 359.95277 * 20 19 18 22 22 C 1.33699 * 121.39909 * 0.09785 * 21 20 19 23 23 N 1.32235 * 119.74303 * 359.97438 * 14 13 12 24 24 C 1.39560 * 119.88362 * 0.25480 * 13 12 11 25 25 C 1.37774 * 119.93532 * 359.53491 * 24 13 12 26 26 H 0.96998 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.08006 * 119.96838 * 359.97438 * 11 10 9 28 28 H 1.07993 * 120.03362 * 180.02562 * 12 11 10 29 29 H 1.08009 * 119.77405 * 359.95596 * 15 14 13 30 30 H 1.08003 * 120.87915 * 359.97438 * 18 17 16 31 31 H 1.08002 * 120.04229 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.15046 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.03828 * 179.74200 * 24 13 12 34 34 H 1.07996 * 119.97050 * 180.18247 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4402 0.6999 7 6 2.0088 -1.2010 -0.0005 8 1 3.0888 -1.2010 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0695 -3.5038 0.1054 11 6 3.4584 -3.4355 0.0915 12 6 4.2071 -4.5869 0.1984 13 6 3.5704 -5.8228 0.3214 14 6 4.3726 -7.0624 0.4359 15 6 3.7234 -8.3057 0.5602 16 7 4.4199 -9.4121 0.6621 17 6 5.7566 -9.3606 0.6484 18 6 6.5293 -10.5325 0.7566 19 6 7.8899 -10.4138 0.7368 20 6 8.4760 -9.1559 0.6115 21 7 7.7535 -8.0665 0.5095 22 6 6.4174 -8.1129 0.5231 23 7 5.6931 -6.9931 0.4206 24 6 2.1764 -5.8890 0.3303 25 6 1.4326 -4.7338 0.2274 26 1 -0.4850 0.8400 0.0004 27 1 3.9506 -2.4788 -0.0041 28 1 5.2857 -4.5332 0.1879 29 1 2.6442 -8.3484 0.5721 30 1 6.0587 -11.4998 0.8535 31 1 8.5107 -11.2939 0.8174 32 1 9.5530 -9.0764 0.5968 33 1 1.6811 -6.8444 0.4212 34 1 0.3538 -4.7841 0.2373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:41 Heat of formation + Delta-G solvation = 85.060574 kcal Electronic energy + Delta-G solvation = -20993.216899 eV Core-core repulsion = 17664.373445 eV Total energy + Delta-G solvation = -3328.843454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56168 -39.31424 -38.39365 -36.61925 -34.90240 -32.64756 -32.02022 -31.54144 -30.38526 -28.71403 -25.81174 -25.45899 -24.38559 -22.95975 -21.84807 -21.31817 -19.30031 -18.30462 -17.95778 -17.54153 -16.87932 -15.47396 -15.43789 -15.28543 -15.01304 -14.57708 -14.42849 -13.88785 -13.65909 -13.39423 -12.96346 -12.93393 -12.68567 -12.42833 -12.14958 -11.90906 -11.72857 -11.37203 -11.30221 -10.99156 -10.82946 -10.58754 -10.48153 -9.55218 -9.45811 -9.30885 -8.89892 -8.68896 -8.40053 -7.27346 -6.69920 -4.23098 -0.02680 0.28393 1.68285 2.08932 2.15362 2.83723 3.03428 3.04819 3.09163 3.52891 3.79607 3.95148 4.01231 4.08311 4.48354 4.50595 4.57685 4.73318 4.87026 4.92547 4.98950 5.10855 5.33625 5.47668 5.57907 5.63117 5.71301 5.90931 6.02184 6.21676 6.36624 6.46117 6.73636 6.80030 7.00138 7.03126 7.21944 7.25474 7.47749 7.57570 7.76000 8.02681 8.74757 9.40200 10.46196 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.034149 B = 0.002966 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.728681 B = 9436.975910 C =10242.121520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.390 4.390 8 H 0.099 0.901 9 O -0.158 6.158 10 C 0.170 3.830 11 C -0.244 4.244 12 C -0.009 4.009 13 C -0.180 4.180 14 C 0.217 3.783 15 C 0.080 3.920 16 N -0.415 5.415 17 C -0.007 4.007 18 C -0.021 4.021 19 C -0.184 4.184 20 C 0.160 3.840 21 N -0.463 5.463 22 C 0.280 3.720 23 N -0.445 5.445 24 C -0.039 4.039 25 C -0.195 4.195 26 H 0.275 0.725 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.180 0.820 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.120 0.880 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.287 -16.377 1.316 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.466 4.466 8 H 0.117 0.883 9 O -0.058 6.058 10 C 0.113 3.887 11 C -0.264 4.264 12 C -0.029 4.029 13 C -0.183 4.183 14 C 0.064 3.936 15 C -0.099 4.099 16 N -0.128 5.128 17 C -0.132 4.132 18 C -0.049 4.049 19 C -0.206 4.206 20 C -0.017 4.017 21 N -0.173 5.173 22 C 0.039 3.961 23 N -0.161 5.161 24 C -0.059 4.059 25 C -0.214 4.214 26 H 0.085 0.915 27 H 0.151 0.849 28 H 0.142 0.858 29 H 0.197 0.803 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.185 0.815 33 H 0.138 0.862 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.371 -15.380 1.219 18.590 hybrid contribution 0.092 -0.030 0.067 0.118 sum 10.463 -15.410 1.285 18.671 Atomic orbital electron populations 1.70020 1.06173 1.28432 1.43473 1.25420 0.95925 0.99241 0.95893 0.85630 0.79072 0.79355 0.79027 1.19560 1.19998 1.18822 1.21536 0.92253 0.80486 1.52284 0.88329 1.83918 1.35078 1.11870 1.74920 1.19589 0.90363 0.87857 0.90937 1.21144 0.93522 0.99188 1.12539 1.20946 0.99541 0.90685 0.91731 1.17777 0.91858 0.90136 1.18572 1.21170 0.89051 0.94301 0.89108 1.24184 1.01951 0.87981 0.95757 1.68529 1.05505 1.30569 1.08227 1.20265 0.91890 0.95344 1.05706 1.21258 0.93210 0.97455 0.92932 1.21961 0.95303 0.99730 1.03632 1.23143 1.00532 0.87139 0.90893 1.67604 1.04702 1.31873 1.13140 1.19998 0.91164 0.88690 0.96294 1.68369 1.05787 1.28129 1.13864 1.20666 0.91778 0.97302 0.96130 1.20099 0.99837 0.89835 1.11663 0.91481 0.84945 0.85802 0.80322 0.83658 0.83691 0.81500 0.86176 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.40 13.67 55.48 0.76 -22.64 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.95 19.36 29.55 -169.99 -5.02 14.33 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.39 -10.22 9.48 30.90 0.29 -9.92 16 8 H 0.10 2.38 5.19 -52.48 -0.27 2.11 16 9 O -0.16 -4.19 9.75 0.45 0.00 -4.19 16 10 C 0.17 3.81 6.65 -38.97 -0.26 3.55 16 11 C -0.24 -5.09 9.15 -39.45 -0.36 -5.45 16 12 C -0.01 -0.18 9.57 -39.26 -0.38 -0.55 16 13 C -0.18 -3.14 5.88 -104.86 -0.62 -3.75 16 14 C 0.22 3.59 6.74 -82.67 -0.56 3.04 16 15 C 0.08 1.13 10.60 -16.88 -0.18 0.95 16 16 N -0.42 -6.01 10.45 -10.50 -0.11 -6.12 16 17 C -0.01 -0.10 6.59 -84.72 -0.56 -0.66 16 18 C -0.02 -0.22 10.10 -39.21 -0.40 -0.62 16 19 C -0.18 -1.51 10.03 -39.77 -0.40 -1.91 16 20 C 0.16 1.59 11.15 -17.45 -0.19 1.40 16 21 N -0.46 -6.97 10.43 -12.58 -0.13 -7.10 16 22 C 0.28 4.65 7.60 -157.76 -1.20 3.45 16 23 N -0.44 -8.07 9.61 -9.02 -0.09 -8.16 16 24 C -0.04 -0.63 9.41 -39.26 -0.37 -1.00 16 25 C -0.19 -3.70 9.98 -39.45 -0.39 -4.10 16 26 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.13 2.74 5.62 -52.48 -0.30 2.45 16 28 H 0.12 2.27 7.53 -52.49 -0.40 1.88 16 29 H 0.18 1.89 6.16 -52.48 -0.32 1.56 16 30 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.12 1.44 6.16 -52.49 -0.32 1.11 16 34 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 304.41 15.07 4.59 4.59 Total: -1.00 -31.73 304.41 -8.10 -39.83 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -2.44 Total: 4.05 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -5.66 Total: -14.59 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.43 Total: -44.02 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: 0.00 Total: -4.19 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.73 -8.10 -39.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.886 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds