Wall clock time and date at job start Tue Mar 31 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38312 * 119.92711 * 2 1 4 4 C 1.38090 * 120.06869 * 179.97438 * 3 2 1 5 5 C 1.38898 * 119.93061 * 0.06148 * 4 3 2 6 6 N 1.39896 * 120.07306 * 180.22961 * 5 4 3 7 7 C 1.34775 * 120.00031 * 312.56522 * 6 5 4 8 8 S 1.71204 * 120.00018 * 4.32758 * 7 6 5 9 9 N 1.34776 * 120.00142 * 184.32378 * 7 6 5 10 10 N 1.40101 * 119.99786 * 0.02562 * 9 7 6 11 11 C 1.34777 * 119.99767 * 179.97438 * 10 9 7 12 12 O 1.21690 * 120.00049 * 0.02562 * 11 10 9 13 13 C 1.46371 * 119.99720 * 179.97438 * 11 10 9 14 14 H 1.07994 * 120.00461 * 0.02562 * 13 11 10 15 15 C 1.40054 * 119.99720 * 180.02562 * 13 11 10 16 16 N 1.30671 * 120.00417 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 119.99890 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46752 * 359.97438 * 17 15 13 19 19 H 1.48489 * 109.47393 * 119.99801 * 17 15 13 20 20 H 1.48500 * 109.46900 * 240.00343 * 17 15 13 21 21 C 1.38862 * 119.85816 * 359.96205 * 5 4 3 22 22 C 1.50699 * 120.03400 * 180.02562 * 21 5 4 23 23 C 1.38123 * 119.92833 * 359.97438 * 21 5 4 24 24 H 1.08996 * 109.47046 * 269.97271 * 1 2 3 25 25 H 1.08995 * 109.46843 * 29.97732 * 1 2 3 26 26 H 1.08998 * 109.46979 * 149.97733 * 1 2 3 27 27 H 1.07998 * 119.96323 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.02933 * 180.02562 * 4 3 2 29 29 H 0.96990 * 119.99896 * 132.55723 * 6 5 4 30 30 H 0.96998 * 119.99749 * 179.97438 * 9 7 6 31 31 H 0.96997 * 119.99903 * 359.97438 * 10 9 7 32 32 H 0.96995 * 120.00081 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.46982 * 90.00119 * 22 21 5 34 34 H 1.09002 * 109.47376 * 209.99923 * 22 21 5 35 35 H 1.08999 * 109.47627 * 329.99942 * 22 21 5 36 36 H 1.08002 * 119.96651 * 180.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2739 0.0001 -0.0002 6 7 5.6729 0.0001 0.0052 7 6 6.3501 0.7920 -0.8496 8 16 5.5017 1.8788 -1.8645 9 7 7.6952 0.7285 -0.9054 10 7 8.3894 -0.1612 -0.0751 11 6 9.7345 -0.2251 -0.1313 12 8 10.3460 0.4903 -0.9027 13 6 10.4598 -1.1542 0.7365 14 1 9.9173 -1.7888 1.4215 15 6 11.8576 -1.2202 0.6786 16 7 12.5143 -0.4521 -0.1498 17 14 12.7833 -2.4065 1.7856 18 1 11.8157 -3.1575 2.6252 19 1 13.5591 -3.3590 0.9514 20 1 13.7109 -1.6455 2.6606 21 6 3.5782 -1.2016 -0.0007 22 6 4.3293 -2.5081 -0.0009 23 6 2.1969 -1.1982 0.0001 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6553 2.1329 0.0004 28 1 4.1161 2.1385 0.0010 29 1 6.1554 -0.5698 0.6241 30 1 8.1825 1.2982 -1.5208 31 1 7.9020 -0.7312 0.5400 32 1 13.4823 -0.4981 -0.1902 33 1 4.5102 -2.8234 1.0267 34 1 3.7390 -3.2666 -0.5151 35 1 5.2821 -2.3794 -0.5145 36 1 1.6552 -2.1325 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006572641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:30 Heat of formation + Delta-G solvation = 33.418160 kcal Electronic energy + Delta-G solvation = -20342.381590 eV Core-core repulsion = 17146.742704 eV Total energy + Delta-G solvation = -3195.638886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38343 -38.90125 -37.08216 -35.02184 -33.08588 -32.82718 -31.57646 -30.70614 -27.33461 -26.81594 -26.14947 -23.72180 -21.97111 -21.39396 -20.45299 -19.35213 -18.11957 -17.33064 -16.30930 -15.80708 -15.59344 -15.35760 -14.95553 -14.40318 -14.19131 -14.04467 -13.78306 -13.35167 -13.20232 -12.95202 -12.90231 -12.63888 -12.11595 -11.76608 -11.65927 -11.40608 -11.33006 -11.10840 -11.02492 -10.98127 -10.53906 -10.45005 -9.25693 -8.85289 -8.68399 -8.36221 -7.96001 -7.28443 -7.02913 -6.65019 -5.16002 1.06938 1.48112 1.72767 1.90759 2.63892 2.87810 2.90106 3.00357 3.04040 3.75659 3.83337 4.09514 4.69348 4.81356 4.96473 5.00128 5.20477 5.23647 5.25074 5.39326 5.44824 5.50639 5.56197 5.76365 5.81100 5.89176 6.10164 6.26904 6.34919 6.46286 6.64394 6.72974 6.82534 7.00818 7.13179 7.42075 7.71434 7.88402 8.52097 8.67828 9.95286 10.24609 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.003542 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.528155 B = 7902.927366 C = 8783.846346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C -0.123 4.123 4 C -0.059 4.059 5 C 0.128 3.872 6 N -0.638 5.638 7 C 0.554 3.446 8 S -0.646 6.646 9 N -0.436 5.436 10 N -0.580 5.580 11 C 0.549 3.451 12 O -0.562 6.562 13 C -0.527 4.527 14 H 0.078 0.922 15 C 0.086 3.914 16 N -0.754 5.754 17 Si 0.922 3.078 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.272 1.272 21 C -0.085 4.085 22 C -0.118 4.118 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.147 0.853 29 H 0.403 0.597 30 H 0.457 0.543 31 H 0.401 0.599 32 H 0.277 0.723 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.015 -4.619 5.337 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.081 4.081 5 C 0.035 3.965 6 N -0.268 5.268 7 C 0.189 3.811 8 S -0.518 6.518 9 N -0.155 5.155 10 N -0.335 5.335 11 C 0.356 3.644 12 O -0.441 6.441 13 C -0.565 4.565 14 H 0.097 0.903 15 C -0.137 4.137 16 N -0.381 5.381 17 Si 0.746 3.254 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.088 4.088 22 C -0.175 4.175 23 C -0.141 4.141 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.164 0.836 29 H 0.242 0.758 30 H 0.306 0.694 31 H 0.240 0.760 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.696 -3.432 4.091 17.529 hybrid contribution 1.199 -1.422 1.248 2.240 sum -15.497 -4.854 5.338 17.094 Atomic orbital electron populations 1.20766 0.91391 1.02667 1.02053 1.19912 0.95902 0.93164 0.99374 1.20823 0.93412 0.97468 1.02526 1.21468 0.94106 0.98190 0.94312 1.17162 0.79839 0.93893 1.05637 1.41951 1.05672 1.42776 1.36420 1.22268 0.83482 0.88227 0.87103 1.93352 1.66301 1.42538 1.49601 1.44751 1.00995 1.34549 1.35185 1.46854 1.06279 1.39717 1.40664 1.18869 0.76206 0.84674 0.84696 1.90690 1.64833 1.46338 1.42282 1.20687 0.91202 1.22182 1.22449 0.90344 1.25767 0.97498 0.95435 0.95013 1.69982 1.08850 1.30736 1.28557 0.86062 0.79587 0.79916 0.79854 1.18450 1.19739 1.19740 1.19704 0.94002 0.93666 1.01450 1.20779 1.00280 0.94103 1.02350 1.20579 0.92354 0.97608 1.03546 0.91361 0.91554 0.91753 0.85846 0.83588 0.75819 0.69398 0.75986 0.91233 0.90987 0.90989 0.91707 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.08 -0.89 5.88 -104.58 -0.62 -1.51 16 3 C -0.12 -1.48 9.69 -39.61 -0.38 -1.86 16 4 C -0.06 -0.83 7.89 -39.39 -0.31 -1.14 16 5 C 0.13 1.78 5.85 -83.70 -0.49 1.29 16 6 N -0.64 -9.04 4.38 -11.40 -0.05 -9.09 16 7 C 0.55 9.60 7.84 -86.92 -0.68 8.92 16 8 S -0.65 -12.79 26.56 -107.50 -2.85 -15.64 16 9 N -0.44 -8.16 6.26 29.96 0.19 -7.98 16 10 N -0.58 -11.18 6.25 30.19 0.19 -10.99 16 11 C 0.55 13.66 7.86 -12.99 -0.10 13.56 16 12 O -0.56 -16.33 14.86 5.20 0.08 -16.25 16 13 C -0.53 -12.86 9.54 -35.63 -0.34 -13.20 16 14 H 0.08 1.68 7.85 -52.49 -0.41 1.27 16 15 C 0.09 2.11 5.50 -17.36 -0.10 2.01 16 16 N -0.75 -20.38 11.83 55.55 0.66 -19.73 16 17 Si 0.92 17.80 29.56 -169.99 -5.02 12.78 16 18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 21 C -0.09 -1.03 5.90 -104.43 -0.62 -1.64 16 22 C -0.12 -1.18 9.59 36.01 0.35 -0.83 16 23 C -0.12 -1.32 9.35 -39.61 -0.37 -1.69 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.15 2.29 6.30 -49.65 -0.31 1.98 16 29 H 0.40 4.87 6.39 -40.82 -0.26 4.61 16 30 H 0.46 9.28 7.98 -182.60 -1.46 7.82 16 31 H 0.40 6.29 6.69 -182.60 -1.22 5.06 16 32 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.06 0.72 7.39 -51.93 -0.38 0.33 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -31.83 323.47 -11.38 -43.20 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -6.13 Total: 15.43 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.30 Total: 3.39 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.98 Total: -47.79 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: 0.08 Total: -16.25 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.78 kcal Atomic # 16 Polarization: -12.79 SS G_CDS: -2.85 Total: -15.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.83 -11.38 -43.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006572641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.619 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds