Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38302 * 119.96715 * 2 1 4 4 C 1.38265 * 120.14534 * 180.25235 * 3 2 1 5 5 C 1.38130 * 120.06641 * 359.45148 * 4 3 2 6 6 C 1.50700 * 120.03411 * 180.27481 * 5 4 3 7 7 C 1.38862 * 119.93101 * 0.54529 * 5 4 3 8 8 N 1.39891 * 120.07083 * 179.70007 * 7 5 4 9 9 C 1.34780 * 119.99440 * 132.62410 * 8 7 5 10 10 S 1.71201 * 120.00253 * 4.33835 * 9 8 7 11 11 N 1.34779 * 119.99752 * 184.33507 * 9 8 7 12 12 N 1.40103 * 120.00082 * 0.02562 * 11 9 8 13 13 C 1.34769 * 120.00088 * 179.97438 * 12 11 9 14 14 O 1.21693 * 119.99769 * 359.97438 * 13 12 11 15 15 C 1.46375 * 120.00342 * 179.97438 * 13 12 11 16 16 H 1.08000 * 119.99807 * 359.97438 * 15 13 12 17 17 C 1.40047 * 120.00188 * 179.97438 * 15 13 12 18 18 N 1.30662 * 120.00156 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99827 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47144 * 60.00292 * 19 17 15 21 21 H 1.48500 * 109.46997 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47302 * 300.00083 * 19 17 15 23 23 C 1.38093 * 119.96046 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47070 * 89.99746 * 1 2 3 25 25 H 1.08998 * 109.47437 * 209.99909 * 1 2 3 26 26 H 1.09002 * 109.46917 * 330.00313 * 1 2 3 27 27 H 1.08004 * 119.92603 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.96492 * 179.70364 * 4 3 2 29 29 H 1.09001 * 109.47213 * 270.27478 * 6 5 4 30 30 H 1.09003 * 109.47027 * 30.27412 * 6 5 4 31 31 H 1.08996 * 109.47208 * 150.27609 * 6 5 4 32 32 H 0.96995 * 120.00389 * 312.62702 * 8 7 5 33 33 H 0.97004 * 119.99993 * 180.02562 * 11 9 8 34 34 H 0.97005 * 119.99894 * 359.97438 * 12 11 9 35 35 H 0.97000 * 120.00606 * 179.97438 * 18 17 15 36 36 H 1.07994 * 120.03799 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5805 1.2024 -0.0053 5 6 4.2763 0.0092 0.0009 6 6 5.7833 0.0148 0.0014 7 6 3.5857 -1.1955 0.0009 8 7 4.2874 -2.4057 0.0008 9 6 3.9416 -3.3851 0.8598 10 16 2.5755 -3.1921 1.8733 11 7 4.6714 -4.5166 0.9207 12 7 5.7897 -4.6745 0.0916 13 6 6.5197 -5.8056 0.1529 14 8 6.2078 -6.6898 0.9287 15 6 7.6877 -5.9708 -0.7137 16 1 7.9643 -5.1864 -1.4026 17 6 8.4466 -7.1461 -0.6496 18 7 8.1118 -8.0954 0.1834 19 14 9.9377 -7.3565 -1.7551 20 1 10.9199 -6.2794 -1.4718 21 1 10.5633 -8.6782 -1.4961 22 1 9.5148 -7.2796 -3.1765 23 6 2.1967 -1.1964 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6561 2.1325 -0.0004 28 1 4.1170 2.1397 -0.0101 29 1 6.1470 0.0160 -1.0261 30 1 6.1431 0.9062 0.5152 31 1 6.1497 -0.8738 0.5155 32 1 5.0227 -2.5400 -0.6173 33 1 4.4224 -5.2217 1.5386 34 1 6.0385 -3.9695 -0.5266 35 1 8.6372 -8.9096 0.2276 36 1 1.6567 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006572971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = 33.592527 kcal Electronic energy + Delta-G solvation = -20420.671292 eV Core-core repulsion = 17225.039967 eV Total energy + Delta-G solvation = -3195.631325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39000 -38.88840 -37.04214 -34.94034 -33.55190 -32.88390 -31.20030 -29.53224 -29.19614 -26.72305 -24.97120 -23.92859 -22.28365 -21.36829 -20.64309 -19.17689 -18.01324 -17.09858 -16.19692 -15.79723 -15.59355 -15.55639 -15.25924 -14.42373 -14.21808 -13.96024 -13.82707 -13.30999 -12.93974 -12.88984 -12.83997 -12.68894 -11.94959 -11.71435 -11.64518 -11.41211 -11.28987 -11.15852 -11.01668 -10.98779 -10.59620 -10.47695 -9.24708 -8.93470 -8.53767 -8.36364 -7.99679 -7.28608 -7.02579 -6.64553 -5.16076 1.08332 1.45867 1.73368 1.91017 2.63366 2.86875 2.92550 3.00003 3.01963 3.75604 3.83499 4.09592 4.75669 4.82123 4.98676 5.05969 5.14221 5.25110 5.27075 5.44742 5.50214 5.59868 5.64788 5.76273 5.88031 5.93669 6.13896 6.28145 6.34060 6.47029 6.64846 6.73907 6.82139 7.00493 7.13653 7.41751 7.70853 7.87996 8.51854 8.67785 9.95276 10.24909 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003655 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.979297 B = 7658.565430 C = 8474.484810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.118 4.118 5 C -0.095 4.095 6 C -0.118 4.118 7 C 0.137 3.863 8 N -0.639 5.639 9 C 0.554 3.446 10 S -0.644 6.644 11 N -0.436 5.436 12 N -0.580 5.580 13 C 0.549 3.451 14 O -0.562 6.562 15 C -0.528 4.528 16 H 0.077 0.923 17 C 0.086 3.914 18 N -0.755 5.755 19 Si 0.923 3.077 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.062 4.062 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.403 0.597 33 H 0.457 0.543 34 H 0.401 0.599 35 H 0.278 0.722 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 16.087 -5.372 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.137 4.137 5 C -0.098 4.098 6 C -0.174 4.174 7 C 0.043 3.957 8 N -0.269 5.269 9 C 0.189 3.811 10 S -0.517 6.517 11 N -0.154 5.154 12 N -0.335 5.335 13 C 0.356 3.644 14 O -0.442 6.442 15 C -0.566 4.566 16 H 0.096 0.904 17 C -0.137 4.137 18 N -0.381 5.381 19 Si 0.746 3.254 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.189 1.189 23 C -0.085 4.085 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.242 0.758 33 H 0.306 0.694 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.929 15.208 -4.116 16.834 hybrid contribution 1.882 -0.251 -1.261 2.279 sum -4.048 14.958 -5.377 16.402 Atomic orbital electron populations 1.20734 0.91095 1.02912 1.01912 1.19689 0.96130 0.92348 1.01021 1.21006 0.94019 0.97465 1.00870 1.20695 0.94014 0.96572 1.02415 1.19714 0.95945 0.91806 1.02325 1.20768 0.91140 1.03240 1.02291 1.17148 0.91047 0.82636 1.04843 1.41959 1.35694 1.12905 1.36331 1.22272 0.90260 0.81462 0.87101 1.93344 1.20382 1.88269 1.49678 1.44755 1.19355 1.16241 1.35097 1.46854 1.22482 1.23649 1.40532 1.18848 0.82558 0.78282 0.84725 1.90690 1.71005 1.40420 1.42037 1.20616 1.09551 1.04056 1.22374 0.90433 1.25755 0.98289 0.94628 0.95006 1.69958 1.35004 1.04811 1.28371 0.86170 0.80397 0.78449 0.80389 1.18890 1.20138 1.18895 1.21358 0.92334 0.99412 0.95349 0.91545 0.91156 0.91815 0.86226 0.85903 0.91058 0.91020 0.91772 0.75788 0.69388 0.75989 0.91117 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.09 -1.09 5.88 -104.65 -0.62 -1.71 16 3 C -0.11 -1.23 9.70 -39.55 -0.38 -1.62 16 4 C -0.12 -1.26 9.70 -39.61 -0.38 -1.65 16 5 C -0.10 -1.14 5.90 -104.43 -0.62 -1.76 16 6 C -0.12 -1.18 9.59 36.01 0.35 -0.83 16 7 C 0.14 1.90 5.85 -83.70 -0.49 1.41 16 8 N -0.64 -9.07 4.38 -11.40 -0.05 -9.12 16 9 C 0.55 9.59 7.84 -86.91 -0.68 8.91 16 10 S -0.64 -12.71 26.56 -107.50 -2.85 -15.57 16 11 N -0.44 -8.15 6.26 29.96 0.19 -7.96 16 12 N -0.58 -11.18 6.25 30.19 0.19 -10.99 16 13 C 0.55 13.67 7.86 -12.99 -0.10 13.57 16 14 O -0.56 -16.32 14.86 5.19 0.08 -16.24 16 15 C -0.53 -12.88 9.54 -35.63 -0.34 -13.22 16 16 H 0.08 1.65 7.85 -52.49 -0.41 1.24 16 17 C 0.09 2.12 5.50 -17.37 -0.10 2.03 16 18 N -0.75 -20.39 11.83 55.55 0.66 -19.73 16 19 Si 0.92 17.80 29.56 -169.99 -5.02 12.77 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 C -0.06 -0.89 7.53 -39.39 -0.30 -1.19 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 26 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.06 0.71 7.39 -51.93 -0.38 0.33 16 32 H 0.40 4.88 6.39 -40.82 -0.26 4.62 16 33 H 0.46 9.26 7.98 -182.59 -1.46 7.81 16 34 H 0.40 6.28 6.69 -182.59 -1.22 5.06 16 35 H 0.28 6.81 8.29 -40.82 -0.34 6.47 16 36 H 0.15 2.31 6.31 -49.81 -0.31 1.99 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -31.71 323.47 -11.38 -43.08 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -6.13 Total: 15.66 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -3.30 Total: 3.22 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.98 Total: -47.80 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.08 Total: -16.24 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.77 kcal Atomic # 16 Polarization: -12.71 SS G_CDS: -2.85 Total: -15.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.71 -11.38 -43.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006572971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.676 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds