Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38302 * 119.96715 * 2 1 4 4 C 1.38265 * 120.14534 * 180.25235 * 3 2 1 5 5 C 1.38130 * 120.06641 * 359.45148 * 4 3 2 6 6 C 1.50700 * 120.03411 * 180.27481 * 5 4 3 7 7 C 1.38862 * 119.93101 * 0.54529 * 5 4 3 8 8 N 1.39891 * 120.07083 * 179.70007 * 7 5 4 9 9 C 1.34780 * 119.99440 * 132.62410 * 8 7 5 10 10 S 1.71201 * 120.00253 * 4.33835 * 9 8 7 11 11 N 1.34779 * 119.99752 * 184.33507 * 9 8 7 12 12 N 1.40103 * 120.00082 * 0.02562 * 11 9 8 13 13 C 1.34769 * 120.00088 * 179.97438 * 12 11 9 14 14 O 1.21693 * 119.99769 * 359.97438 * 13 12 11 15 15 C 1.46375 * 120.00342 * 179.97438 * 13 12 11 16 16 H 1.08000 * 119.99807 * 359.97438 * 15 13 12 17 17 C 1.40047 * 120.00188 * 179.97438 * 15 13 12 18 18 N 1.30662 * 120.00156 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99827 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47144 * 60.00292 * 19 17 15 21 21 H 1.48500 * 109.46997 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47302 * 300.00083 * 19 17 15 23 23 C 1.38093 * 119.96046 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47070 * 89.99746 * 1 2 3 25 25 H 1.08998 * 109.47437 * 209.99909 * 1 2 3 26 26 H 1.09002 * 109.46917 * 330.00313 * 1 2 3 27 27 H 1.08004 * 119.92603 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.96492 * 179.70364 * 4 3 2 29 29 H 1.09001 * 109.47213 * 270.27478 * 6 5 4 30 30 H 1.09003 * 109.47027 * 30.27412 * 6 5 4 31 31 H 1.08996 * 109.47208 * 150.27609 * 6 5 4 32 32 H 0.96995 * 120.00389 * 312.62702 * 8 7 5 33 33 H 0.97004 * 119.99993 * 180.02562 * 11 9 8 34 34 H 0.97005 * 119.99894 * 359.97438 * 12 11 9 35 35 H 0.97000 * 120.00606 * 179.97438 * 18 17 15 36 36 H 1.07994 * 120.03799 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5805 1.2024 -0.0053 5 6 4.2763 0.0092 0.0009 6 6 5.7833 0.0148 0.0014 7 6 3.5857 -1.1955 0.0009 8 7 4.2874 -2.4057 0.0008 9 6 3.9416 -3.3851 0.8598 10 16 2.5755 -3.1921 1.8733 11 7 4.6714 -4.5166 0.9207 12 7 5.7897 -4.6745 0.0916 13 6 6.5197 -5.8056 0.1529 14 8 6.2078 -6.6898 0.9287 15 6 7.6877 -5.9708 -0.7137 16 1 7.9643 -5.1864 -1.4026 17 6 8.4466 -7.1461 -0.6496 18 7 8.1118 -8.0954 0.1834 19 14 9.9377 -7.3565 -1.7551 20 1 10.9199 -6.2794 -1.4718 21 1 10.5633 -8.6782 -1.4961 22 1 9.5148 -7.2796 -3.1765 23 6 2.1967 -1.1964 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6561 2.1325 -0.0004 28 1 4.1170 2.1397 -0.0101 29 1 6.1470 0.0160 -1.0261 30 1 6.1431 0.9062 0.5152 31 1 6.1497 -0.8738 0.5155 32 1 5.0227 -2.5400 -0.6173 33 1 4.4224 -5.2217 1.5386 34 1 6.0385 -3.9695 -0.5266 35 1 8.6372 -8.9096 0.2276 36 1 1.6567 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006572971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = 14.168219 kcal Electronic energy + Delta-G solvation = -20421.513593 eV Core-core repulsion = 17225.039967 eV Total energy + Delta-G solvation = -3196.473626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59355 -40.30677 -38.62142 -36.33886 -34.81279 -34.47361 -32.80277 -30.55987 -30.08217 -28.54904 -25.91714 -25.16906 -23.66670 -22.51088 -22.08039 -20.59497 -19.53494 -18.65621 -17.72266 -17.06411 -17.01430 -16.77191 -16.43111 -15.90557 -15.79335 -14.96378 -14.77229 -14.73226 -14.43004 -14.05285 -13.78381 -13.47828 -13.39262 -12.92001 -12.87255 -12.76240 -12.66241 -12.50782 -12.25578 -12.12008 -12.10666 -11.74719 -11.02035 -10.35553 -10.22775 -9.66439 -9.13701 -8.91838 -8.54715 -8.43789 -7.08490 -0.13041 0.29135 0.49083 0.64932 1.14381 1.42616 1.43998 1.57286 1.59667 2.22078 2.25801 2.82097 3.37012 3.54075 3.89697 3.96434 4.17925 4.29317 4.35172 4.58717 4.74242 4.75209 4.80206 4.85615 4.90955 4.98872 5.15065 5.17967 5.24649 5.37051 5.40855 5.55325 5.63720 5.73879 5.84128 6.01429 6.20592 6.27370 6.65492 6.93864 8.08245 8.44653 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003655 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.979297 B = 7658.565430 C = 8474.484810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C -0.109 4.109 4 C -0.116 4.116 5 C -0.097 4.097 6 C -0.117 4.117 7 C 0.105 3.895 8 N -0.616 5.616 9 C 0.570 3.430 10 S -0.688 6.688 11 N -0.445 5.445 12 N -0.563 5.563 13 C 0.538 3.462 14 O -0.613 6.613 15 C -0.547 4.547 16 H 0.108 0.892 17 C 0.031 3.969 18 N -0.811 5.811 19 Si 1.007 2.993 20 H -0.250 1.250 21 H -0.278 1.278 22 H -0.251 1.251 23 C -0.083 4.083 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.414 0.586 33 H 0.449 0.551 34 H 0.420 0.580 35 H 0.281 0.719 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 19.159 -7.291 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.127 4.127 4 C -0.135 4.135 5 C -0.099 4.099 6 C -0.174 4.174 7 C 0.013 3.987 8 N -0.245 5.245 9 C 0.204 3.796 10 S -0.561 6.561 11 N -0.164 5.164 12 N -0.318 5.318 13 C 0.345 3.655 14 O -0.497 6.497 15 C -0.585 4.585 16 H 0.126 0.874 17 C -0.186 4.186 18 N -0.439 5.439 19 Si 0.825 3.175 20 H -0.174 1.174 21 H -0.203 1.203 22 H -0.175 1.175 23 C -0.105 4.105 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.169 0.831 28 H 0.173 0.827 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.255 0.745 33 H 0.296 0.704 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.650 18.403 -6.093 19.935 hybrid contribution 1.369 -1.024 -0.683 1.841 sum -3.281 17.379 -6.776 18.939 Atomic orbital electron populations 1.20758 0.89788 1.03031 1.02878 1.19992 0.97310 0.92234 1.00690 1.21402 0.94384 0.97994 0.98934 1.21124 0.94245 0.97250 1.00859 1.20008 0.97141 0.91366 1.01404 1.20828 0.89639 1.03335 1.03587 1.17425 0.91203 0.82864 1.07233 1.41919 1.35273 1.12359 1.34947 1.21969 0.89194 0.81464 0.86926 1.93406 1.22240 1.88850 1.51643 1.44652 1.19595 1.16657 1.35524 1.46158 1.22137 1.23024 1.40524 1.19163 0.83214 0.78720 0.84382 1.90654 1.72458 1.42636 1.43962 1.21237 1.09416 1.05162 1.22663 0.87382 1.27037 1.01571 0.93870 0.96140 1.70127 1.37060 1.05827 1.30885 0.84911 0.75810 0.78479 0.78280 1.17372 1.20320 1.17455 1.21278 0.92695 0.99449 0.97081 0.90122 0.92810 0.89893 0.83120 0.82723 0.89083 0.89324 0.93292 0.74453 0.70411 0.73746 0.90853 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.01 71.24 0.71 -1.28 16 2 C -0.10 -2.31 5.88 -19.88 -0.12 -2.43 16 3 C -0.11 -1.99 9.70 22.29 0.22 -1.77 16 4 C -0.12 -2.07 9.70 22.25 0.22 -1.86 16 5 C -0.10 -2.09 5.90 -19.74 -0.12 -2.21 16 6 C -0.12 -2.00 9.59 71.24 0.68 -1.32 16 7 C 0.11 2.85 5.85 38.16 0.22 3.08 16 8 N -0.62 -17.25 4.38 -189.98 -0.83 -18.09 16 9 C 0.57 20.13 7.84 179.05 1.40 21.54 16 10 S -0.69 -28.12 26.56 -56.49 -1.50 -29.62 16 11 N -0.45 -17.13 6.26 -59.11 -0.37 -17.50 16 12 N -0.56 -21.81 6.25 -176.63 -1.10 -22.92 16 13 C 0.54 27.26 7.86 86.36 0.68 27.94 16 14 O -0.61 -37.04 14.86 -4.33 -0.06 -37.10 16 15 C -0.55 -26.44 9.54 24.83 0.24 -26.20 16 16 H 0.11 4.36 7.85 -2.91 -0.02 4.34 16 17 C 0.03 1.54 5.50 85.31 0.47 2.01 16 18 N -0.81 -44.93 11.83 21.83 0.26 -44.68 16 19 Si 1.01 35.53 29.56 68.60 2.03 37.55 16 20 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 21 H -0.28 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 23 C -0.08 -2.38 7.53 22.39 0.17 -2.21 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.16 8.08 -2.39 -0.02 1.14 16 26 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 27 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 31 H 0.05 0.99 7.39 -2.39 -0.02 0.97 16 32 H 0.41 9.58 6.39 -92.71 -0.59 8.99 16 33 H 0.45 19.14 7.98 -213.31 -1.70 17.44 16 34 H 0.42 12.76 6.69 -213.31 -1.43 11.33 16 35 H 0.28 14.18 8.29 -92.71 -0.77 13.41 16 36 H 0.12 4.02 6.31 -4.62 -0.03 3.99 16 Total: -1.00 -71.83 323.47 0.61 -71.22 By element: Atomic # 1 Polarization: 48.42 SS G_CDS: -2.58 Total: 45.84 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 4.78 Total: 15.29 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -2.05 Total: -103.18 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.06 Total: -37.10 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 16 Polarization: -28.12 SS G_CDS: -1.50 Total: -29.62 kcal Total: -71.83 0.61 -71.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006572971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.390 kcal (2) G-P(sol) polarization free energy of solvation -71.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds