Wall clock time and date at job start Tue Mar 31 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38300 * 119.92614 * 2 1 4 4 C 1.38088 * 120.07158 * 180.27486 * 3 2 1 5 5 C 1.38908 * 119.92577 * 359.44779 * 4 3 2 6 6 N 1.39887 * 120.07199 * 180.25215 * 5 4 3 7 7 C 1.34774 * 119.99871 * 41.91305 * 6 5 4 8 8 S 1.71195 * 120.00272 * 5.55147 * 7 6 5 9 9 N 1.34784 * 119.99981 * 185.54989 * 7 6 5 10 10 N 1.40096 * 120.00077 * 0.02562 * 9 7 6 11 11 C 1.34771 * 120.00243 * 179.97438 * 10 9 7 12 12 O 1.21690 * 119.99910 * 0.02562 * 11 10 9 13 13 C 1.46377 * 120.00330 * 180.02562 * 11 10 9 14 14 H 1.08004 * 119.99601 * 359.97438 * 13 11 10 15 15 C 1.40045 * 120.00240 * 180.02562 * 13 11 10 16 16 N 1.30673 * 120.00022 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00031 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46957 * 90.00181 * 17 15 13 19 19 H 1.48499 * 109.47142 * 209.99661 * 17 15 13 20 20 H 1.48495 * 109.47195 * 329.99987 * 17 15 13 21 21 C 1.38856 * 119.85758 * 0.27444 * 5 4 3 22 22 C 1.38133 * 119.92844 * 0.02562 * 21 5 4 23 23 C 1.50704 * 119.96606 * 180.02562 * 22 21 5 24 24 H 1.09005 * 109.46859 * 270.27526 * 1 2 3 25 25 H 1.08995 * 109.47258 * 30.27861 * 1 2 3 26 26 H 1.09007 * 109.46755 * 150.28056 * 1 2 3 27 27 H 1.08001 * 119.96803 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.04123 * 179.71871 * 4 3 2 29 29 H 0.96996 * 120.00203 * 221.90809 * 6 5 4 30 30 H 0.96995 * 119.99968 * 180.02562 * 9 7 6 31 31 H 0.97005 * 119.99967 * 0.02562 * 10 9 7 32 32 H 0.97003 * 120.00186 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.03695 * 180.02562 * 21 5 4 34 34 H 1.09003 * 109.46661 * 90.00247 * 23 22 21 35 35 H 1.09003 * 109.47154 * 209.99774 * 23 22 21 36 36 H 1.08997 * 109.47135 * 330.00701 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2021 -0.0057 5 6 4.2739 0.0000 0.0001 6 7 5.6728 0.0001 -0.0004 7 6 6.3469 0.8726 0.7747 8 16 5.4973 1.8830 1.8647 9 7 7.6900 0.9496 0.6917 10 7 8.3852 0.1232 -0.2006 11 6 9.7281 0.2006 -0.2840 12 8 10.3368 0.9880 0.4162 13 6 10.4546 -0.6625 -1.2167 14 1 9.9143 -1.3617 -1.8378 15 6 11.8501 -0.5825 -1.3029 16 7 12.5037 0.2631 -0.5511 17 14 12.7771 -1.6845 -2.4927 18 1 12.9051 -0.9997 -3.8043 19 1 14.1293 -1.9718 -1.9503 20 1 12.0338 -2.9578 -2.6696 21 6 3.5782 -1.2016 0.0059 22 6 2.1969 -1.1982 0.0053 23 6 1.4409 -2.5019 0.0122 24 1 -0.3633 0.0049 1.0277 25 1 -0.3633 0.8874 -0.5181 26 1 -0.3633 -0.8926 -0.5095 27 1 1.6553 2.1329 -0.0004 28 1 4.1161 2.1384 -0.0103 29 1 6.1577 -0.6279 -0.5584 30 1 8.1751 1.5773 1.2498 31 1 7.9000 -0.5043 -0.7590 32 1 13.4703 0.3189 -0.6111 33 1 4.1165 -2.1379 0.0109 34 1 1.2583 -2.8105 1.0416 35 1 0.4889 -2.3727 -0.5027 36 1 2.0288 -3.2655 -0.4970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006574407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:33 Heat of formation + Delta-G solvation = 35.150619 kcal Electronic energy + Delta-G solvation = -20111.708361 eV Core-core repulsion = 16916.144600 eV Total energy + Delta-G solvation = -3195.563761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.31255 -38.98826 -37.21231 -35.12732 -32.94279 -32.48387 -31.88474 -30.72047 -27.64553 -26.70866 -25.98375 -23.56198 -22.27213 -21.55167 -20.19572 -19.42314 -18.00570 -17.25736 -16.24823 -15.89943 -15.52973 -15.39655 -15.16589 -14.60693 -14.27912 -14.19292 -13.75172 -13.15870 -13.06564 -12.94872 -12.90975 -12.56674 -12.08685 -11.94618 -11.67891 -11.34361 -11.30440 -11.05643 -11.01492 -10.98921 -10.56889 -10.46385 -9.25030 -8.81141 -8.76928 -8.36819 -7.91882 -7.29723 -7.01549 -6.64928 -5.16148 1.03926 1.46616 1.75406 1.90695 2.63210 2.85061 2.91232 3.00247 3.03216 3.77173 3.83361 4.09357 4.72920 4.81419 4.96566 5.01468 5.03416 5.24873 5.25291 5.37462 5.42898 5.55807 5.64332 5.70919 5.79663 5.84948 6.01924 6.28099 6.32685 6.47310 6.67205 6.70755 6.83787 7.00602 7.12584 7.41204 7.70931 7.87561 8.51833 8.67537 9.94936 10.24628 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.003320 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.828496 B = 8431.570659 C = 9339.410949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.109 4.109 4 C -0.073 4.073 5 C 0.140 3.860 6 N -0.640 5.640 7 C 0.553 3.447 8 S -0.644 6.644 9 N -0.435 5.435 10 N -0.580 5.580 11 C 0.549 3.451 12 O -0.562 6.562 13 C -0.527 4.527 14 H 0.078 0.922 15 C 0.086 3.914 16 N -0.754 5.754 17 Si 0.923 3.077 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.262 1.262 21 C -0.124 4.124 22 C -0.085 4.085 23 C -0.113 4.113 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.144 0.856 29 H 0.403 0.597 30 H 0.457 0.543 31 H 0.402 0.598 32 H 0.277 0.723 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 -5.817 -4.063 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.095 4.095 5 C 0.046 3.954 6 N -0.270 5.270 7 C 0.188 3.812 8 S -0.517 6.517 9 N -0.153 5.153 10 N -0.335 5.335 11 C 0.355 3.645 12 O -0.442 6.442 13 C -0.565 4.565 14 H 0.096 0.904 15 C -0.137 4.137 16 N -0.381 5.381 17 Si 0.746 3.254 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.186 1.186 21 C -0.145 4.145 22 C -0.087 4.087 23 C -0.169 4.169 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.162 0.838 29 H 0.242 0.758 30 H 0.306 0.694 31 H 0.241 0.759 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.669 -4.574 -2.871 18.476 hybrid contribution 1.306 -1.381 -1.274 2.289 sum -16.363 -5.956 -4.145 17.900 Atomic orbital electron populations 1.20834 0.91504 1.02551 1.02231 1.19745 0.95835 0.92639 1.00841 1.20798 0.93335 0.97413 1.01378 1.21374 0.94174 0.98081 0.95865 1.17314 0.79884 0.94513 1.03676 1.42020 1.05700 1.35968 1.43302 1.22274 0.83510 0.87883 0.87531 1.93376 1.66373 1.49350 1.42553 1.44777 1.01250 1.34535 1.34757 1.46865 1.06518 1.40135 1.39992 1.18864 0.76208 0.84808 0.84572 1.90689 1.64909 1.41351 1.47204 1.20654 0.91401 1.21931 1.22551 0.90378 1.25765 0.97478 0.95016 0.95458 1.69975 1.09067 1.28106 1.30995 0.86107 0.78868 0.80312 0.80088 1.19317 1.20030 1.18569 1.20698 0.93841 0.96241 1.03765 1.19370 0.92555 0.94964 1.01766 1.20811 0.99906 0.93944 1.02282 0.91273 0.91728 0.91389 0.85767 0.83850 0.75779 0.69382 0.75920 0.91172 0.85969 0.91274 0.91217 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.60 36.01 0.35 -0.55 16 2 C -0.09 -0.97 5.88 -104.59 -0.62 -1.59 16 3 C -0.11 -1.33 9.69 -39.61 -0.38 -1.71 16 4 C -0.07 -1.04 7.86 -39.39 -0.31 -1.35 16 5 C 0.14 1.94 5.91 -83.71 -0.49 1.44 16 6 N -0.64 -9.09 5.28 -11.40 -0.06 -9.15 16 7 C 0.55 9.60 7.74 -86.91 -0.67 8.93 16 8 S -0.64 -12.79 26.62 -107.50 -2.86 -15.66 16 9 N -0.43 -8.15 6.26 29.96 0.19 -7.96 16 10 N -0.58 -11.22 6.25 30.19 0.19 -11.03 16 11 C 0.55 13.70 7.86 -12.99 -0.10 13.60 16 12 O -0.56 -16.36 14.86 5.20 0.08 -16.28 16 13 C -0.53 -12.92 9.54 -35.63 -0.34 -13.26 16 14 H 0.08 1.68 7.85 -52.48 -0.41 1.26 16 15 C 0.09 2.12 5.50 -17.37 -0.10 2.02 16 16 N -0.75 -20.44 11.83 55.55 0.66 -19.78 16 17 Si 0.92 17.86 29.56 -169.99 -5.02 12.83 16 18 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 21 C -0.12 -1.49 9.62 -39.39 -0.38 -1.87 16 22 C -0.09 -0.93 5.88 -104.65 -0.62 -1.54 16 23 C -0.11 -0.89 9.60 36.01 0.35 -0.55 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.14 2.28 6.27 -50.02 -0.31 1.96 16 29 H 0.40 4.81 6.77 -40.82 -0.28 4.53 16 30 H 0.46 9.28 7.98 -182.61 -1.46 7.82 16 31 H 0.40 6.30 6.70 -182.60 -1.22 5.08 16 32 H 0.28 6.79 8.29 -40.82 -0.34 6.45 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 36 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -32.05 320.95 -11.28 -43.33 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.96 Total: 15.29 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -3.32 Total: 3.58 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.97 Total: -47.92 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.08 Total: -16.28 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.02 Total: 12.83 kcal Atomic # 16 Polarization: -12.79 SS G_CDS: -2.86 Total: -15.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.05 -11.28 -43.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006574407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.477 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds