Wall clock time and date at job start Tue Mar 31 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38300 * 119.92614 * 2 1 4 4 C 1.38088 * 120.07158 * 180.27486 * 3 2 1 5 5 C 1.38908 * 119.92577 * 359.44779 * 4 3 2 6 6 N 1.39887 * 120.07199 * 180.25215 * 5 4 3 7 7 C 1.34774 * 119.99871 * 41.91305 * 6 5 4 8 8 S 1.71195 * 120.00272 * 5.55147 * 7 6 5 9 9 N 1.34784 * 119.99981 * 185.54989 * 7 6 5 10 10 N 1.40096 * 120.00077 * 0.02562 * 9 7 6 11 11 C 1.34771 * 120.00243 * 179.97438 * 10 9 7 12 12 O 1.21690 * 119.99910 * 0.02562 * 11 10 9 13 13 C 1.46377 * 120.00330 * 180.02562 * 11 10 9 14 14 H 1.08004 * 119.99601 * 359.97438 * 13 11 10 15 15 C 1.40045 * 120.00240 * 180.02562 * 13 11 10 16 16 N 1.30673 * 120.00022 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00031 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46957 * 90.00181 * 17 15 13 19 19 H 1.48499 * 109.47142 * 209.99661 * 17 15 13 20 20 H 1.48495 * 109.47195 * 329.99987 * 17 15 13 21 21 C 1.38856 * 119.85758 * 0.27444 * 5 4 3 22 22 C 1.38133 * 119.92844 * 0.02562 * 21 5 4 23 23 C 1.50704 * 119.96606 * 180.02562 * 22 21 5 24 24 H 1.09005 * 109.46859 * 270.27526 * 1 2 3 25 25 H 1.08995 * 109.47258 * 30.27861 * 1 2 3 26 26 H 1.09007 * 109.46755 * 150.28056 * 1 2 3 27 27 H 1.08001 * 119.96803 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.04123 * 179.71871 * 4 3 2 29 29 H 0.96996 * 120.00203 * 221.90809 * 6 5 4 30 30 H 0.96995 * 119.99968 * 180.02562 * 9 7 6 31 31 H 0.97005 * 119.99967 * 0.02562 * 10 9 7 32 32 H 0.97003 * 120.00186 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.03695 * 180.02562 * 21 5 4 34 34 H 1.09003 * 109.46661 * 90.00247 * 23 22 21 35 35 H 1.09003 * 109.47154 * 209.99774 * 23 22 21 36 36 H 1.08997 * 109.47135 * 330.00701 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2021 -0.0057 5 6 4.2739 0.0000 0.0001 6 7 5.6728 0.0001 -0.0004 7 6 6.3469 0.8726 0.7747 8 16 5.4973 1.8830 1.8647 9 7 7.6900 0.9496 0.6917 10 7 8.3852 0.1232 -0.2006 11 6 9.7281 0.2006 -0.2840 12 8 10.3368 0.9880 0.4162 13 6 10.4546 -0.6625 -1.2167 14 1 9.9143 -1.3617 -1.8378 15 6 11.8501 -0.5825 -1.3029 16 7 12.5037 0.2631 -0.5511 17 14 12.7771 -1.6845 -2.4927 18 1 12.9051 -0.9997 -3.8043 19 1 14.1293 -1.9718 -1.9503 20 1 12.0338 -2.9578 -2.6696 21 6 3.5782 -1.2016 0.0059 22 6 2.1969 -1.1982 0.0053 23 6 1.4409 -2.5019 0.0122 24 1 -0.3633 0.0049 1.0277 25 1 -0.3633 0.8874 -0.5181 26 1 -0.3633 -0.8926 -0.5095 27 1 1.6553 2.1329 -0.0004 28 1 4.1161 2.1384 -0.0103 29 1 6.1577 -0.6279 -0.5584 30 1 8.1751 1.5773 1.2498 31 1 7.9000 -0.5043 -0.7590 32 1 13.4703 0.3189 -0.6111 33 1 4.1165 -2.1379 0.0109 34 1 1.2583 -2.8105 1.0416 35 1 0.4889 -2.3727 -0.5027 36 1 2.0288 -3.2655 -0.4970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006574407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:33 Heat of formation + Delta-G solvation = 15.107711 kcal Electronic energy + Delta-G solvation = -20112.577487 eV Core-core repulsion = 16916.144600 eV Total energy + Delta-G solvation = -3196.432887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52851 -40.35174 -38.77429 -36.56104 -34.80643 -33.49954 -33.09316 -32.03306 -28.72329 -28.27003 -26.88408 -24.97315 -23.26478 -23.05060 -21.43995 -20.89047 -19.48359 -18.81291 -17.81963 -17.13855 -17.06854 -16.61454 -16.24709 -15.96708 -15.81252 -15.13641 -14.77318 -14.67066 -14.60729 -14.00816 -13.50081 -13.40770 -13.39186 -13.10613 -12.87559 -12.81753 -12.72457 -12.57478 -12.08883 -12.06518 -11.94924 -11.74361 -11.04463 -10.35694 -10.16140 -9.75729 -9.17068 -8.92814 -8.53175 -8.42393 -7.09001 -0.19161 0.28801 0.51122 0.64686 1.13950 1.40492 1.43623 1.56046 1.59867 2.21571 2.25134 2.81456 3.36334 3.53357 3.91102 4.00055 4.14883 4.32656 4.36703 4.42226 4.75586 4.81016 4.85438 4.95400 4.98835 5.01295 5.15158 5.17921 5.20603 5.33068 5.49520 5.56833 5.58864 5.78430 5.83081 6.01631 6.19044 6.26779 6.65083 6.93390 8.07560 8.44121 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.003320 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.828496 B = 8431.570659 C = 9339.410949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.092 4.092 5 C 0.110 3.890 6 N -0.618 5.618 7 C 0.570 3.430 8 S -0.689 6.689 9 N -0.444 5.444 10 N -0.563 5.563 11 C 0.538 3.462 12 O -0.613 6.613 13 C -0.547 4.547 14 H 0.108 0.892 15 C 0.031 3.969 16 N -0.811 5.811 17 Si 1.007 2.993 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.242 1.242 21 C -0.123 4.123 22 C -0.088 4.088 23 C -0.112 4.112 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.137 0.863 28 H 0.119 0.881 29 H 0.416 0.584 30 H 0.449 0.551 31 H 0.421 0.579 32 H 0.281 0.719 33 H 0.141 0.859 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 -8.607 -5.807 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.114 4.114 5 C 0.018 3.982 6 N -0.247 5.247 7 C 0.204 3.796 8 S -0.563 6.563 9 N -0.163 5.163 10 N -0.319 5.319 11 C 0.345 3.655 12 O -0.497 6.497 13 C -0.584 4.584 14 H 0.126 0.874 15 C -0.187 4.187 16 N -0.439 5.439 17 Si 0.826 3.174 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.165 1.165 21 C -0.144 4.144 22 C -0.089 4.089 23 C -0.168 4.168 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.155 0.845 28 H 0.137 0.863 29 H 0.257 0.743 30 H 0.296 0.704 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.775 -7.421 -4.661 21.630 hybrid contribution 1.701 -0.525 -0.737 1.927 sum -18.074 -7.946 -5.397 20.468 Atomic orbital electron populations 1.20915 0.89017 1.04020 1.03099 1.20160 0.97684 0.92051 0.98890 1.21024 0.92638 0.98876 1.01271 1.21280 0.95238 0.97364 0.97524 1.17543 0.79294 0.95368 1.06030 1.41980 1.06218 1.34672 1.41801 1.21947 0.82652 0.87788 0.87180 1.93438 1.66863 1.51367 1.44599 1.44669 1.01456 1.34955 1.35195 1.46167 1.05589 1.40134 1.39962 1.19174 0.77562 0.84450 0.84331 1.90654 1.66741 1.43277 1.49035 1.21267 0.92194 1.22257 1.22687 0.87382 1.27047 0.98510 0.96148 0.96974 1.70139 1.09675 1.30594 1.33513 0.84852 0.77002 0.78506 0.77056 1.18595 1.20122 1.16478 1.20963 0.94583 0.96035 1.02824 1.19820 0.92340 0.96466 1.00303 1.20885 1.00456 0.92341 1.03117 0.90522 0.90787 0.89517 0.84546 0.86271 0.74274 0.70385 0.73639 0.90846 0.84132 0.90596 0.89462 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.60 71.24 0.68 -0.72 16 2 C -0.09 -1.69 5.88 -19.84 -0.12 -1.80 16 3 C -0.12 -2.79 9.69 22.25 0.22 -2.57 16 4 C -0.09 -2.66 7.86 22.39 0.18 -2.48 16 5 C 0.11 2.98 5.91 38.16 0.23 3.21 16 6 N -0.62 -17.18 5.28 -189.99 -1.00 -18.18 16 7 C 0.57 20.08 7.74 179.05 1.39 21.47 16 8 S -0.69 -28.24 26.62 -56.49 -1.50 -29.75 16 9 N -0.44 -17.05 6.26 -59.12 -0.37 -17.42 16 10 N -0.56 -21.80 6.25 -176.63 -1.10 -22.91 16 11 C 0.54 27.28 7.86 86.36 0.68 27.96 16 12 O -0.61 -37.08 14.86 -4.32 -0.06 -37.14 16 13 C -0.55 -26.47 9.54 24.83 0.24 -26.23 16 14 H 0.11 4.39 7.85 -2.91 -0.02 4.37 16 15 C 0.03 1.51 5.50 85.30 0.47 1.98 16 16 N -0.81 -45.02 11.83 21.83 0.26 -44.76 16 17 Si 1.01 35.66 29.56 68.60 2.03 37.69 16 18 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 19 H -0.28 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.24 -7.72 7.11 99.48 0.71 -7.01 16 21 C -0.12 -2.69 9.62 22.39 0.22 -2.48 16 22 C -0.09 -1.67 5.88 -19.88 -0.12 -1.78 16 23 C -0.11 -1.33 9.60 71.24 0.68 -0.65 16 24 H 0.08 0.88 8.14 -2.38 -0.02 0.87 16 25 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 26 H 0.09 0.76 5.94 -2.38 -0.01 0.75 16 27 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 28 H 0.12 3.97 6.27 -4.48 -0.03 3.95 16 29 H 0.42 9.32 6.77 -92.71 -0.63 8.70 16 30 H 0.45 19.11 7.98 -213.33 -1.70 17.40 16 31 H 0.42 12.72 6.70 -213.32 -1.43 11.29 16 32 H 0.28 14.16 8.29 -92.71 -0.77 13.39 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.75 5.94 -2.39 -0.01 0.74 16 36 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 Total: -1.00 -72.21 320.95 0.37 -71.84 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -2.61 Total: 44.73 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 4.74 Total: 15.90 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -2.22 Total: -103.27 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.06 Total: -37.14 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Atomic # 16 Polarization: -28.24 SS G_CDS: -1.50 Total: -29.75 kcal Total: -72.21 0.37 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006574407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.947 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds