Wall clock time and date at job start Tue Mar 31 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.47190 * 2 1 4 4 N 1.29428 * 124.80312 * 90.28387 * 3 2 1 5 5 C 1.30944 * 117.36216 * 180.17729 * 4 3 2 6 6 C 1.35663 * 114.18850 * 359.56231 * 5 4 3 7 7 C 1.46683 * 126.12835 * 180.23446 * 6 5 4 8 8 O 1.21688 * 119.99815 * 352.31484 * 7 6 5 9 9 N 1.34772 * 120.00361 * 172.32590 * 7 6 5 10 10 C 1.46501 * 119.99844 * 2.12528 * 9 7 6 11 11 C 1.50703 * 109.46912 * 82.35255 * 10 9 7 12 12 H 1.08008 * 119.99790 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00137 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99990 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47008 * 89.99784 * 15 13 11 17 17 H 1.48493 * 109.47011 * 209.99796 * 15 13 11 18 18 H 1.48494 * 109.47166 * 330.00074 * 15 13 11 19 19 C 1.46498 * 120.00347 * 182.13469 * 9 7 6 20 20 C 1.53005 * 109.47276 * 85.08547 * 19 9 7 21 21 C 1.47195 * 109.47008 * 180.02562 * 20 19 9 22 22 N 9.27024 * 148.04776 * 135.74724 * 3 1 2 23 23 S 1.70950 * 124.80277 * 270.00258 * 3 2 1 24 24 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47199 * 299.99744 * 1 2 3 26 26 H 1.09000 * 109.47270 * 60.00008 * 1 2 3 27 27 H 1.09003 * 109.47199 * 240.00256 * 2 1 3 28 28 H 1.09000 * 109.47270 * 119.99992 * 2 1 3 29 29 H 1.07994 * 122.90493 * 179.82306 * 5 4 3 30 30 H 1.08997 * 109.47364 * 202.35221 * 10 9 7 31 31 H 1.08996 * 109.47320 * 322.35456 * 10 9 7 32 32 H 0.97000 * 120.00356 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.46957 * 205.08799 * 19 9 7 34 34 H 1.09000 * 109.47157 * 325.08803 * 19 9 7 35 35 H 1.08997 * 109.46822 * 299.99931 * 20 19 9 36 36 H 1.09000 * 109.46818 * 60.00049 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2835 2.1156 1.0627 5 6 2.7122 3.3412 0.8932 6 6 2.8422 3.7099 -0.4059 7 6 3.3038 5.0143 -0.8926 8 8 3.4784 5.9290 -0.1092 9 7 3.5344 5.1999 -2.2074 10 6 3.2796 4.1133 -3.1564 11 6 1.8142 4.0858 -3.5068 12 1 1.1400 4.8055 -3.0664 13 6 1.3339 3.1412 -4.3888 14 7 2.1546 2.2645 -4.9248 15 14 -0.4828 3.1067 -4.8227 16 1 -0.7260 3.9726 -6.0043 17 1 -0.8901 1.7138 -5.1374 18 1 -1.2763 3.6063 -3.6712 19 6 4.0401 6.4883 -2.6878 20 6 5.5652 6.5142 -2.5684 21 6 6.0732 7.8089 -3.0504 22 7 6.4653 8.8077 -3.4235 23 16 2.3575 2.3408 -1.4037 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9461 4.0000 1.7163 30 1 3.8664 4.2753 -4.0605 31 1 3.5631 3.1626 -2.7048 32 1 1.8168 1.6001 -5.5456 33 1 3.7549 6.6244 -3.7310 34 1 3.6149 7.2923 -2.0870 35 1 5.8503 6.3781 -1.5252 36 1 5.9904 5.7102 -3.1691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049377209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:20 Heat of formation + Delta-G solvation = 27.363779 kcal Electronic energy + Delta-G solvation = -21053.256339 eV Core-core repulsion = 17857.354915 eV Total energy + Delta-G solvation = -3195.901424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.58602 -38.65623 -36.68694 -35.37032 -33.64988 -33.18447 -31.50700 -29.04613 -27.57285 -25.69489 -24.07129 -23.39414 -22.25763 -20.36255 -18.03788 -17.81866 -17.47637 -16.83367 -16.05541 -15.73804 -14.79887 -14.71401 -14.55535 -14.33498 -14.04408 -13.81551 -13.36869 -13.14197 -12.89636 -12.62720 -12.45055 -12.34495 -12.05238 -11.93200 -11.65022 -11.45884 -11.24248 -11.08312 -10.91662 -10.77670 -10.46519 -10.41307 -10.09937 -9.48705 -9.05228 -8.58921 -8.53908 -8.28828 -7.89942 -6.50813 -4.54354 0.98842 2.14494 2.56536 2.79426 2.89115 3.06389 3.10218 3.15201 3.19742 3.54799 3.83482 4.09764 4.29726 4.65826 4.84167 5.09533 5.23474 5.26361 5.39787 5.46853 5.50410 5.58342 5.92701 5.94101 5.97787 6.04421 6.13397 6.16492 6.28525 6.35106 6.70622 6.77239 7.13657 7.45025 7.60678 7.64805 7.91104 8.37430 8.45819 8.69731 9.07394 10.53537 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.006716 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.531570 B = 4168.094663 C = 5783.617248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C -0.062 4.062 4 N -0.500 5.500 5 C 0.097 3.903 6 C -0.325 4.325 7 C 0.599 3.401 8 O -0.558 6.558 9 N -0.596 5.596 10 C 0.226 3.774 11 C -0.540 4.540 12 H 0.070 0.930 13 C 0.078 3.922 14 N -0.874 5.874 15 Si 0.889 3.111 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.268 1.268 19 C 0.130 3.870 20 C -0.047 4.047 21 C 0.221 3.779 22 N -0.448 5.448 23 S 0.375 5.625 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.170 0.830 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.272 0.728 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -4.383 3.485 5.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.332 4.332 4 N -0.216 5.216 5 C -0.066 4.066 6 C -0.450 4.450 7 C 0.388 3.612 8 O -0.440 6.440 9 N -0.327 5.327 10 C 0.104 3.896 11 C -0.582 4.582 12 H 0.088 0.912 13 C -0.129 4.129 14 N -0.510 5.510 15 Si 0.715 3.285 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.193 1.193 19 C 0.005 3.995 20 C -0.088 4.088 21 C -0.097 4.097 22 N -0.126 5.126 23 S 0.641 5.359 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.187 0.813 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.209 -3.190 2.608 4.294 hybrid contribution -0.982 0.087 0.521 1.115 sum 0.227 -3.103 3.129 4.413 Atomic orbital electron populations 1.21763 0.94290 1.01811 1.02629 1.20050 0.96191 0.88874 1.03188 1.28498 1.03515 1.02660 0.98478 1.66207 1.16280 1.05907 1.33203 1.21806 0.97890 0.91905 0.94988 1.25790 1.18752 1.01912 0.98584 1.16845 0.76596 0.85736 0.82035 1.90735 1.54867 1.42620 1.55741 1.47989 1.63288 1.14582 1.06794 1.19766 0.97841 0.83541 0.88442 1.21518 0.93072 1.16553 1.27076 0.91184 1.24888 0.98458 0.94763 0.94784 1.69886 1.35145 1.17117 1.28815 0.86592 0.84443 0.77978 0.79488 1.20056 1.20473 1.19266 1.21138 0.89868 0.86863 1.01618 1.19791 0.97882 0.87526 1.03639 1.29060 0.93181 0.94620 0.92849 1.81188 1.09442 1.11998 1.09933 1.86538 1.50484 0.98440 1.00420 0.92053 0.92314 0.92249 0.90169 0.90084 0.81274 0.92491 0.94089 0.91815 0.88970 0.89781 0.87090 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 37.15 0.37 -1.49 16 2 C -0.04 -0.59 6.51 -27.88 -0.18 -0.77 16 3 C -0.06 -1.07 6.64 -13.29 -0.09 -1.16 16 4 N -0.50 -9.25 10.51 -11.50 -0.12 -9.37 16 5 C 0.10 1.79 11.10 -18.85 -0.21 1.58 16 6 C -0.32 -6.25 6.24 -37.09 -0.23 -6.48 16 7 C 0.60 11.69 7.54 -12.85 -0.10 11.59 16 8 O -0.56 -11.63 16.52 5.20 0.09 -11.55 16 9 N -0.60 -10.70 2.49 -176.60 -0.44 -11.14 16 10 C 0.23 4.44 4.72 -5.19 -0.02 4.42 16 11 C -0.54 -11.85 7.01 -34.44 -0.24 -12.09 16 12 H 0.07 1.63 7.81 -52.48 -0.41 1.22 16 13 C 0.08 1.73 5.06 -17.82 -0.09 1.64 16 14 N -0.87 -19.94 13.29 55.43 0.74 -19.20 16 15 Si 0.89 18.10 29.54 -169.99 -5.02 13.08 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 C 0.13 1.93 5.30 -4.04 -0.02 1.91 16 20 C -0.05 -0.57 5.99 -29.52 -0.18 -0.74 16 21 C 0.22 3.01 15.43 -20.76 -0.32 2.69 16 22 N -0.45 -7.19 18.54 42.15 0.78 -6.41 16 23 S 0.38 6.98 16.15 -107.50 -1.74 5.25 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.17 2.89 8.06 -52.49 -0.42 2.47 16 30 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16 31 H 0.04 0.85 4.50 -22.82 -0.10 0.74 16 32 H 0.27 5.98 8.31 -40.82 -0.34 5.64 16 33 H 0.09 1.30 8.03 -51.93 -0.42 0.89 16 34 H 0.08 1.29 7.54 -51.93 -0.39 0.90 16 35 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 329.05 15.07 4.96 4.96 Total: -1.00 -26.26 329.05 -6.32 -32.58 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.25 Total: 0.71 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.31 Total: 1.09 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.96 Total: -46.12 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.08 kcal Atomic # 16 Polarization: 6.98 SS G_CDS: -1.74 Total: 5.25 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.26 -6.32 -32.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049377209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.947 kcal (2) G-P(sol) polarization free energy of solvation -26.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds